Jean Muller

16 papers Journal 16
YearRankTypeTitle / Venue / Authors
2023 J jnl
The AnnotSV webserver in 2023: updated visualization and ranking.
Nucleic Acids Res.
Véronique Geoffroy, Jean-Baptiste Lamouche, Thomas Guignard, Samuel Nicaise, Arnaud Kress, Sophie Scheidecker, Antony Le Béchec, Jean Muller
2021 J jnl
AnnotSV and knotAnnotSV: a web server for human structural variations annotations, ranking and analysis.
Nucleic Acids Res.
Véronique Geoffroy, Thomas Guignard, Arnaud Kress, Jean-Baptiste Gaillard, Tor Solli-Nowlan, Audrey Schalk, Vincent Gatinois, Hélène Dollfus, Sophie Scheidecker, Jean Muller
2018 J jnl
AnnotSV: an integrated tool for structural variations annotation.
Bioinform.
Véronique Geoffroy, Yvan Herenger, Arnaud Kress, Corinne Stoetzel, Amélie Piton, Hélène Dollfus, Jean Muller
2012 J jnl
KD4v: comprehensible knowledge discovery system for missense variant.
Nucleic Acids Res.
Tien-Dao Luu, Alin Rusu, Vincent Walter, Benjamin Linard, Laetitia Poidevin, Raymond Ripp, Luc Moulinier, Jean Muller, Wolfgang Raffelsberger, Nicolas Wicker, Odile Lecompte, Julie Dawn Thompson, Olivier Poch, Hoan Nguyen
2012 J jnl
MSV3d: database of human MisSense variants mapped to 3D protein structure.
Database J. Biol. Databases Curation
Tien-Dao Luu, Alin-Mihai Rusu, Vincent Walter, Raymond Ripp, Luc Moulinier, Jean Muller, Thierry Toursel, Julie Dawn Thompson, Olivier Poch, Hoan Nguyen
2012 J jnl
eggNOG v3.0: orthologous groups covering 1133 organisms at 41 different taxonomic ranges.
Nucleic Acids Res.
Sean Powell, Damian Szklarczyk, Kalliopi Trachana, Alexander Roth, Michael Kuhn, Jean Muller, Roland Arnold, Thomas Rattei, Ivica Letunic, Tobias Doerks, Lars Juhl Jensen, Christian von Mering, Peer Bork
2011 J jnl
Identifying Single Copy Orthologs in Metazoa.
PLoS Comput. Biol.
Christopher J. Creevey, Jean Muller, Tobias Doerks, Julie Dawn Thompson, Detlev Arendt, Peer Bork
2011 J jnl
The STRING database in 2011: functional interaction networks of proteins, globally integrated and scored.
Nucleic Acids Res.
Damian Szklarczyk, Andrea Franceschini, Michael Kuhn, Milan Simonovic, Alexander Roth, Pablo Minguez, Tobias Doerks, Manuel Stark, Jean Muller, Peer Bork, Lars Juhl Jensen, Christian von Mering
2010 J jnl
AQUA: automated quality improvement for multiple sequence alignments.
Bioinform.
Jean Muller, Christopher J. Creevey, Julie Dawn Thompson, Detlev Arendt, Peer Bork
2010 J jnl
eggNOG v2.0: extending the evolutionary genealogy of genes with enhanced non-supervised orthologous groups, species and functional annotations.
Nucleic Acids Res.
Jean Muller, Damian Szklarczyk, Philippe Julien, Ivica Letunic, Alexander Roth, Michael Kuhn, Sean Powell, Christian von Mering, Tobias Doerks, Lars Juhl Jensen, Peer Bork
2009 J jnl
STRING 8 - a global view on proteins and their functional interactions in 630 organisms.
Nucleic Acids Res.
Lars Juhl Jensen, Michael Kuhn, Manuel Stark, Samuel Chaffron, Christopher J. Creevey, Jean Muller, Tobias Doerks, Philippe Julien, Alexander Roth, Milan Simonovic, Peer Bork, Christian von Mering
2008 J jnl
A maximum likelihood approximation method for Dirichlet's parameter estimation.
Comput. Stat. Data Anal.
Nicolas Wicker, Jean Muller, Ravi Kiran Reddy Kalathur, Olivier Poch
2008 J jnl
eggNOG: automated construction and annotation of orthologous groups of genes.
Nucleic Acids Res.
Lars Juhl Jensen, Philippe Julien, Michael Kuhn, Christian von Mering, Jean Muller, Tobias Doerks, Peer Bork
2006 J jnl
ICDS database: interrupted CoDing sequences in prokaryotic genomes.
Nucleic Acids Res.
Emmanuel Perrodou, Caroline Deshayes, Jean Muller, Christine Schaeffer, Alain Van Dorsselaer, Raymond Ripp, Olivier Poch, Jean-Marc Reyrat, Odile Lecompte
2005 J jnl
GOAnno: GO annotation based on multiple alignment.
Bioinform.
Frédéric Chalmel, Aurélie Lardenois, Julie Dawn Thompson, Jean Muller, José-Alain Sahel, Thierry Léveillard, Olivier Poch
2003 J jnl
PipeAlign: a new toolkit for protein family analysis.
Nucleic Acids Res.
Frédéric Plewniak, Laurent Bianchetti, Yann Brelivet, Annaick Carles, Frédéric Chalmel, Odile Lecompte, Thiebaut Mochel, Luc Moulinier, Arnaud Muller, Jean Muller, Veronique Prigent, Raymond Ripp, Jean-Claude Thierry, Julie Dawn Thompson, Nicolas Wicker, Olivier Poch