Jean Gao - RankMe

113 papers A* 5A 2B 8C 15Misc 1Journal 31Unranked 48

Year	Rank	Type	Title / Venue / Authors
2026	A*	`conf`	Learning from Guidelines: Structured Prompt Optimization for Expert Annotation Tasks. AAAI Wenliang Zhong, Haiqing Li, Thao M. Dang, Feng Jiang, Hehuan Ma, Yuzhi Guo, Jean Gao, Junzhou Huang
2025	—	`conf`	Contrastive Pretraining for Computational Pathology with Visual-Language Models. ISBI Qifeng Zhou, Thao M. Dang, Yuzhi Guo, Hehuan Ma, Wenliang Zhong, Saiyang Na, Jean Gao, Junzhou Huang
2025	—	`conf`	HAGE: Hierarchical Alignment Gene-Enhanced Pathology Representation Learning with Spatial Transcriptomics. MICCAI (1) Thao M. Dang, Haiqing Li, Yuzhi Guo, Hehuan Ma, Feng Jiang, Yuwei Miao, Qifeng Zhou, Jean Gao, Junzhou Huang
2025	J	`jnl`	Segment Any Cell: A SAM-Based Auto-Prompting Fine-Tuning Framework for Nuclei Segmentation. IEEE Trans. Neural Networks Learn. Syst. Saiyang Na, Yuzhi Guo, Feng Jiang, Hehuan Ma, Jean Gao, Junzhou Huang
2025	J	`jnl`	Text-Guided Multi-Instance Learning for Scoliosis Screening via Gait Video Analysis. CoRR Haiqing Li, Yuzhi Guo, Feng Jiang, Thao M. Dang, Hehuan Ma, Qifeng Zhou, Jean Gao, Junzhou Huang
2025	—	`conf`	Text-Guided Multi-instance Learning for Scoliosis Screening via Gait Video Analysis. MICCAI (6) Haiqing Li, Yuzhi Guo, Feng Jiang, Thao M. Dang, Hehuan Ma, Qifeng Zhou, Jean Gao, Junzhou Huang
2024	—	`conf`	AlphaEpi: Enhancing B Cell Epitope Prediction with AlphaFold 3. BCB Feng Jiang, Yuzhi Guo, Hehuan Ma, Saiyang Na, Weizhi An, Bing Song, Yi Han, Jean Gao, Tao Wang, Junzhou Huang
2024	—	`conf`	MFMF: Multiple Foundation Model Fusion Networks for Whole Slide Image Classification. BCB Thao M. Dang, Yuzhi Guo, Hehuan Ma, Qifeng Zhou, Saiyang Na, Jean Gao, Junzhou Huang
2024	J	`jnl`	UniEntrezDB: Large-scale Gene Ontology Annotation Dataset and Evaluation Benchmarks with Unified Entrez Gene Identifiers. CoRR Yuwei Miao, Yuzhi Guo, Hehuan Ma, Jingquan Yan, Feng Jiang, Weizhi An, Jean Gao, Junzhou Huang
2022	—	`conf`	Causal Discovery in Biological Data Using Directed Topological Overlap Matrix. BIBM Borzou Alipourfard, Jean Gao
2021	J	`jnl`	Deep Fusion of Brain Structure-Function in Mild Cognitive Impairment. Medical Image Anal. Lu Zhang, Li Wang, Jean Gao, Shannon L. Risacher, Jingwen Yan, Gang Li, Tianming Liu, Dajiang Zhu
2020	—	`conf`	Causal Gene Selection Using Marginal Independencies. BIBM Borzou Alipourfard, Jean Gao
2020	J	`jnl`	Layer-stacked Attention for Heterogeneous Network Embedding. CoRR Nhat Tran, Jean Gao
2020	Misc	`conf`	Network Representation of Large-Scale Heterogeneous RNA Sequences with Integration of DiverseMulti-omics, Interactions, and Annotations Data. PSB Nhat Tran, Jean Gao
2019	C	`conf`	Semi-Supervised Discriminative Transfer Learning in Cross-Language Text Classification. ICMLA Mingon Kang, Ashis Kumer Biswas, Dong-Chul Kim, Jean Gao
2019	J	`jnl`	rna2rna: Predicting lncRNA-microRNA-mRNA Interactions from Sequence with Integration of Interactome and Biological Annotation Data. CoRR Nhat Tran, Ishfaq Ahmad, Jean Gao
2018	J	`jnl`	MicroRNA dysregulational synergistic network: discovering microRNA dysregulatory modules across subtypes in non-small cell lung cancers. BMC Bioinform. Nhat Tran, Vinay Abhyankar, Kytai Nguyen, Jon Weidanz, Jean Gao
2017	—	`ed.`	2017 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2017, Kansas City, MO, USA, November 13-16, 2017 BIBM Xiaohua Hu, Chi-Ren Shyu, Yana Bromberg, Jean Gao, Yang Gong, Dmitry Korkin, Illhoi Yoo, Huiru Jane Zheng
2017	J	`jnl`	Cascade Classification with Adaptive Feature Extraction for Arrhythmia Detection. J. Medical Syst. Juyoung Park, Mingon Kang, Jean Gao, Younghoon Kim, Kyungtae Kang
2017	J	`jnl`	Identifying cis/trans-acting expression quantitative trait loci (eQTL). Int. J. Data Min. Bioinform. Mingon Kang, Dong-Chul Kim, Chunyu Liu, Jean Gao
2017	—	`conf`	Improved microRNA biomarkers for pathological stages in lung adenocarcinoma via clustering of dysregulated microRNA-target associations. EMBC Nhat Tran, Borzou Alipourfard, Vinay Abhyankar, Kytai Nguyen, Jon Weidanz, Jean Gao
2017	J	`jnl`	Integration of multi-omics data for integrative gene regulatory network inference. Int. J. Data Min. Bioinform. Neda Zarayeneh, Euiseong Ko, Jung Hun Oh, Sang C. Suh, Chunyu Liu, Jean Gao, Donghyun Kim, Mingon Kang
2017	—	`conf`	LiDiAimc: LincRNA-disease associations through inductive matrix completion. BIBM Ashis Kumer Biswas, Jean Gao
2017	—	`conf`	MicroRNA dysregulational synergistic network: Learning context-specific MicroRNA dysregulations in lung cancer subtypes. BIBM Nhat Tran, Vinay Abhyankar, Kytai Nguyen, Ishfaq Ahmad, Jon Weidanz, Jean Gao
2017	J	`jnl`	Multi-Block Bipartite Graph for Integrative Genomic Analysis. IEEE ACM Trans. Comput. Biol. Bioinform. Mingon Kang, Juyoung Park, Dong-Chul Kim, Ashis Kumer Biswas, Chunyu Liu, Jean Gao
2017	J	`jnl`	Nonlinear-RANSAC parameter optimisation for dynamic molecular systems and signalling pathways. Int. J. Data Min. Bioinform. Mingon Kang, Liping Tang, Jean Gao
2016	J	`jnl`	Computational modeling of phagocyte transmigration for foreign body responses to subcutaneous biomaterial implants in mice. BMC Bioinform. Mingon Kang, Liping Tang, Jean Gao
2016	—	`conf`	Integrative Gene Regulatory Network inference using multi-omics data. BIBM Neda Zarayeneh, Jung Hun Oh, Donghyun Kim, Chunyu Liu, Jean Gao, Sang C. Suh, Mingon Kang
2015	—	`conf`	An integrative genomic study for multimodal genomic data using multi-block bipartite graph. BIBM Mingon Kang, Juyoung Park, Dong-Chul Kim, Ashis Kumer Biswas, Chunyu Liu, Jean Gao
2015	—	`conf`	Flood Prediction and Mining Influential Spatial Features on Future Flood with Causal Discovery. ICDM Workshops Piraporn Jangyodsuk, Dong-Jun Seo, Ramez Elmasri, Jean Gao
2015	—	`conf`	Integrative approach for inference of gene regulatory networks using lasso-based random featuring and application to Psychiatric disorders. BIBM Dong-Chul Kim, Mingon Kang, Ashis Kumer Biswas, Chunyu Liu, Jean Gao
2015	J	`jnl`	Probabilistic partial least squares regression for quantitative analysis of Raman spectra. Int. J. Data Min. Bioinform. Shuo Li, James O. Nyagilo, Digant P. Dave, Wei Wang, Baoju Zhang, Jean Gao
2015	J	`jnl`	eQTL epistasis: detecting epistatic effects and inferring hierarchical relationships of genes in biological pathways. Bioinform. Mingon Kang, Chunling Zhang, Hyung-Wook Chun, Chris H. Q. Ding, Chunyu Liu, Jean Gao
2014	C	`conf`	Integration of DNA Methylation, Copy Number Variation, and Gene Expression for Gene Regulatory Network Inference and Application to Psychiatric Disorders. BIBE Dong-Chul Kim, Mingon Kang, Baoju Zhang, Xiaoyong Wu, Chunyu Liu, Jean Gao
2014	J	`jnl`	Models and Methods for Quantitative Analysis of Surface-Enhanced Raman Spectra. IEEE J. Biomed. Health Informatics Shuo Li, James O. Nyagilo, Digant P. Dave, Jean Gao
2014	C	`conf`	Multi-block and Multi-task Learning for Integrative Genomic Study. BIBE Mingon Kang, Dong-Chul Kim, Chunyu Liu, Baoju Zhang, Xiaoyong Wu, Jean Gao
2014	—	`conf`	iSPUW: A Vision for Integrated Sensing and Prediction of Urban Water for Sustainable Cities. DyDESS Dong-Jun Seo, Branko Kerkez, Michael Zink, Nick Fang, Jean Gao, Xinbao Yu
2013	—	`conf`	A Fast Multi-component Latent Variable Regression Framework for Quantitative Analysis of Surface-Enhanced Raman Spectra. ICMLA (1) Shuo Li, James O. Nyagilo, Digant P. Dave, Baoju Zhang, Xiaoyong Wu, Jean Gao
2013	J	`jnl`	Eigenspectra, a robust regression method for multiplexed Raman spectra analysis. Int. J. Data Min. Bioinform. Shuo Li, James O. Nyagilo, Digant P. Dave, Baoju Zhang, Jean Gao
2013	—	`conf`	Inference of gene regulatory networks by integrating gene expressions and genetic perturbations. BIBM Dong-Chul Kim, Chunyu Liu, Xiaoyong Wu, Baoju Zhang, Jean Gao
2013	—	`conf`	Sparse generalized canonical correlation analysis for biological model integration: A genetic study of psychiatric disorders. EMBC Mingon Kang, Baoju Zhang, Xiaoyong Wu, Chunyu Liu, Jean Gao
2013	—	`conf`	eQTL Mapping Study via Regularized Sparse Canonical Correlation Analysis. ICMLA (1) Mingon Kang, Shuo Li, Dong-Chul Kim, Chunyu Liu, Baoju Zhang, Xiaoyong Wu, Jean Gao
2013	—	`conf`	eQTL epistasis: Detecting complex interaction effects between multiple loci from eQTL data. BIBM Mingon Kang, Shuo Li, Chunyu Liu, Jean Gao
2012	—	`conf`	A New Continuum Regression Method for Quantitative Analysis of Raman Spectrum. ICMLA (1) Shuo Li, Jean Gao, James O. Nyagilo, Digant P. Dave
2012	—	`conf`	CWT-PLSR for quantitative analysis of Raman spectrum. BIBM Shuo Li, James O. Nyagilo, Digant P. Dave, Jean Gao
2011	—	`conf`	A Framework for Personalized Medicine with Reverse Phase Protein Array and Drug Sensitivity. BIBM Dong-Chul Kim, Jean Gao, Xiaoyu Wang, Chin-Rang Yang
2011	—	`conf`	Discovery of lung cancer pathways using Reverse Phase Protein Microarray and prior-knowledge based Bayesian networks. EMBC Dong-Chul Kim, Chin-Rang Yang, Xiaoyu Wang, Baoju Zhang, Xiaorong Wu, Jean Gao
2011	J	`jnl`	Fast Kernel Discriminant Analysis for Classification of Liver Cancer Mass Spectra. IEEE ACM Trans. Comput. Biol. Bioinform. Jung Hun Oh, Jean Gao
2011	—	`conf`	Nonlinear RANSAC Optimization for Parameter Estimation with Applications to Phagocyte Transmigration. ICMLA (1) Mingon Kang, Jean Gao, Liping Tang
2011	—	`conf`	Probabilistic Partial Least Square Regression: A Robust Model for Quantitative Analysis of Raman Spectroscopy Data. BIBM Shuo Li, Jean Gao, James O. Nyagilo, Digant P. Dave
2011	—	`conf`	Subcellular particles tracking in time-lapse confocal microscopy images. EMBC Shuo Li, Kate Luby-Phelps, Baoju Zhang, Xiaorong Wu, Jean Gao
2010	—	`conf`	Eigenspectra, a robust regression method for multiplexed Raman spectra analysis. BIBM Shuo Li, Jean Gao, James O. Nyagilo, Digant P. Dave
2010	J	`jnl`	Embedded planar surface segmentation system for stereo images. Mach. Vis. Appl. Ninad Thakoor, Jean Gao, Sungyong Jung
2010	J	`jnl`	Functional proteomic pattern identification under low dose ionizing radiation. Artif. Intell. Medicine Young Bun Kim, Chin-Rang Yang, Jean Gao
2010	C	`conf`	Learning Proteomic Network Structure by a New Hill Climbing Algorithm. BIBE Dong-Chul Kim, Jean Gao, Chin-Rang Yang
2010	J	`jnl`	Learning biological network using mutual information and conditional independence. BMC Bioinform. Dong-Chul Kim, Xiaoyu Wang, Chin-Rang Yang, Jean Gao
2010	J	`jnl`	Multibody Structure-and-Motion Segmentation by Branch-and-Bound Model Selection. IEEE Trans. Image Process. Ninad Thakoor, Jean Gao, Venkat Devarajan
2009	J	`jnl`	A kernel-based approach for detecting outliers of high-dimensional biological data. BMC Bioinform. Jung Hun Oh, Jean Gao
2009	A*	`conf`	Computation complexity of branch-and-bound model selection. ICCV Ninad Thakoor, Venkat Devarajan, Jean Gao
2009	J	`jnl`	Prostate cancer biomarker discovery using high performance mass spectral serum profiling. Comput. Methods Programs Biomed. Jung Hun Oh, Yair Lotan, Prem Gurnani, Kevin P. Rosenblatt, Jean Gao
2009	J	`jnl`	Tracking multiple interacting subcellular structure by sequential Monte Carlo method. Int. J. Data Min. Bioinform. Quan Wen, Kate Luby-Phelps, Jean Gao
2008	C	`conf`	A hybrid computational model for phagocyte transmigration. BIBE Jiaxing Xue, Jean Gao, Liping Tang
2008	—	`conf`	Biological Data Outlier Detection Based on Kullback-Leibler Divergence. BIBM Jung Hun Oh, Jean Gao, Kevin P. Rosenblatt
2008	A*	`conf`	Branch-and-bound hypothesis selection for two-view multiple structure and motion segmentation. CVPR Ninad Thakoor, Jean Gao
2008	—	`conf`	Functional Proteomic Pattern Identification under Low Dose Ionizing Radiation. BIBM Young Bun Kim, Jean Gao, Ying Dong, Chin-Rang Yang
2008	B	`conf`	Multi-stage branch-and-bound for maximum variance disparity clustering. ICPR Ninad Thakoor, Venkat Devarajan, Jean Gao
2008	J	`jnl`	Multihypothesis Prior for Segmentation of Stereo Disparity. IEEE Signal Process. Lett. Ninad Thakoor, Jean Gao, Venkat Devarajan
2008	J	`jnl`	Multistage Branch-and-Bound Merging for Planar Surface Segmentation in Disparity Space. IEEE Trans. Image Process. Ninad Thakoor, Jean Gao, Venkat Devarajan
2008	C	`conf`	Signaling biomarker pattern discovery using reverse phase protein microarray. BIBE Young Bun Kim, Jean Gao, Johanne V. Pastor, Kevin P. Rosenblatt
2008	J	`jnl`	Wireless Sensor Network Lifetime Analysis Using Interval Type-2 Fuzzy Logic Systems. IEEE Trans. Fuzzy Syst. Haining Shu, Qilian Liang, Jean Gao
2007	—	`conf`	A Novel Classification Method for Analysis of Multi-stage Diseases via Mass Spectrometric Data. BIBM Jung Hun Oh, Young Bun Kim, Jean Gao
2007	—	`conf`	A Statistical Approach for Intensity Loss Compensation of Confocal Microscopy Images. ICIP (6) Sowmya Gopinath, Ninad Thakoor, Jean Gao, Kate Luby-Phelps
2007	C	`conf`	Biomarker Selection for Predicting Alzheimer Disease Using High-Resolution MALDI-TOF Data. BIBE Jung Hun Oh, Young Bun Kim, Prem Gurnani, Kevin P. Rosenblatt, Jean Gao
2007	J	`jnl`	Hidden Markov Model-Based Weighted Likelihood Discriminant for 2-D Shape Classification. IEEE Trans. Image Process. Ninad Thakoor, Jean Gao, Sungyong Jung
2007	—	`conf`	Mathematical Modeling of Phagocyte Chemotaxis toward and Adherence to Biomaterial Implants. BIBM Jiaxing Xue, Jean Gao, Liping Tang
2007	—	`conf`	Multiple Interacting Subcellular Structure Tracking by Sequential Monte Carlo Method. BIBM Quan Wen, Jean Gao, Kate Luby-Phelps
2007	C	`conf`	Phagocyte Transmigration Modeling Using System Dynamic Controls. BIBE Jiaxing Xue, Jean Gao, Liping Tang
2007	A*	`conf`	Real-time Planar Surface Segmentation in Disparity Space. CVPR Ninad Thakoor, Sungyong Jung, Jean Gao
2007	B	`conf`	Three dimensional analysis of the vascular perfusion for anterolateral thigh perforator flaps. Image Processing Jiaxing Xue, Jean Gao, Gary Arbique, Michel Saint-Cyr, Dan Hatef, Spencer Brown
2006	—	`conf`	4D Vascular Tree Reconstruction using Moving Grid Deformation. EMBC Jiaxing Xue, Jean Gao, Gary Arbique, Spencer Brown, Michel Saint-Cyr
2006	C	`conf`	A New Hybrid Approach for Unsupervised Gene Selection. CIBCB Young Bun Kim, Jean Gao
2006	—	`conf`	A New Maximum-Relevance Criterion for Significant Gene Selection. PRIB Young Bun Kim, Jean Gao, Pawel Michalak
2006	J	`jnl`	A multi-Kalman filtering approach for video tracking of human-delineated objects in cluttered environments. Comput. Vis. Image Underst. Jean Gao, Akio Kosaka, Avinash C. Kak
2006	C	`conf`	Classification of Relapse Ovarian Cancer on MALDI-TOF Mass Spectrometry Data. CIBCB Jung Hun Oh, Animesh Nandi, Prem Gurnani, Lynne Knowles, John Schorge, Kevin P. Rosenblatt, Jean Gao
2006	B	`conf`	Detecting Occlusion for Hidden Markov Modeled Shapes. ICIP Ninad Thakoor, Sungyong Jung, Jean Gao
2006	—	`conf`	Feature Selection, Matching, and Evaluation for Subcellular Structure Tracking. EMBC Quan Wen, Jean Gao, Kate Luby-Phelps
2006	—	`conf`	Markov Chain Monte Carlo Data Association for Merge and Split Detection in Tracking Protein Clusters. ICPR (1) Quan Wen, Jean Gao, Kate Luby-Phelps
2006	—	`conf`	Occlusion Resistant Shape Classifier based onWarped Optimal Path Matching. ICPR (2) Ninad Thakoor, Sungyong Jung, Quan Wen, Jean Gao
2006	C	`conf`	Prediction of labor for pregnant women using high-resolution mass spectrometry data. BIBE Jung Hun Oh, Animesh Nandi, Prem Gurnani, Peter Bryant-Greenwood, Kevin P. Rosenblatt, Jean Gao
2006	—	`conf`	Region-based tracking of protein compounds. ISBI Quan Wen, Jean Gao, Kate Luby-Phelps
2006	C	`conf`	Unsupervised Gene Selection For High Dimensional Data. BIBE Young Bun Kim, Jean Gao
2005	C	`conf`	A New Semi-Supervised Subspace Clustering Algorithm on Fitting Mixture Models. CIBCB Young Bun Kim, Jean Gao
2005	J	`jnl`	A multi-Kalman filtering approach for video tracking of human-delineated objects in cluttered environments. Comput. Vis. Image Underst. Jean Gao, Akio Kosaka, Avinash C. Kak
2005	—	`conf`	A particle filter framework using optimal importance function for protein molecules tracking. ICIP (1) Quan Wen, Jean Gao, Akio Kosaka, Hidekazu Iwaki, Kate Luby-Phelps, Dorothy Mundy
2005	—	`ch.`	A two-Way Searching Algorithm for de novo peptide sequencing via tandem mass spectrometry. Advances in Bioinformatics and Its Applications Jung Hun Oh, Young Bun Kim, Jean Gao
2005	B	`conf`	Automatic Extraction and Localization of Multiple Moving Objects with Stereo Camera in Motion. SMC Ninad Thakoor, Jean Gao
2005	—	`conf`	Automatic video object shape extraction and its classification with camera in motion. ICIP (3) Ninad Thakoor, Jean Gao
2005	—	`ch.`	Emerging Pattern based subspace Clustering of microarray gene expression Data using Mixture Models. Advances in Bioinformatics and Its Applications Young Bun Kim, Jung Hun Oh, Jean Gao
2005	B	`conf`	Hidden Markov Model Based 2D Shape Classification. ACIVS Ninad Thakoor, Jean Gao
2005	A	`conf`	Hidden Markov Model Based Weighted Likelihood Discriminant for Minimum Error Shape Classification. ICME Ninad Thakoor, Sungyong Jung, Jean Gao
2005	C	`conf`	Multicategory Classification using Extended SVM-RFE and Markov Blanket on SELDITOF Mass Spectrometry Data. CIBCB Jung Hun Oh, Jean Gao, Animesh Nandi, Prem Gurnani, Lynne Knowles, John Schorge, Kevin P. Rosenblatt
2005	C	`conf`	Peptide Identification by Tandem Mass Spectra: An Efficient Parallel Searching. BIBE Jung Hun Oh, Jean Gao
2005	A*	`conf`	Shape Classifer Based on Generalized Probabilistic Descent Method with Hidden Markov Descriptor. ICCV Ninad Thakoor, Jean Gao
2005	B	`conf`	Shape-based 3D vascular tree extraction for perforator flaps. Image Processing Quan Wen, Jean Gao
2004	B	`conf`	A motion field reconstruction scheme for smooth boundary video object segmentation. ICIP Jean Gao, Ninad Thakoor, Sungyong Jung
2004	—	`conf`	On the development of a fully automated cryosection image registration system. SMC (4) Hua-mei Chen, Yi-Fung Chen, Jean Gao
2003	—	`conf`	Object shape delineation during tracking process. ICIP (3) Jean Gao
2003	B	`conf`	Self-Occlusion Immune Video Tracking of Objects in Cluttered Environments. AVSS Jean Gao
2002	—	`conf`	A multi-frame based motion estimation for semantic object tracking in the presence of occlusion. ICIP (3) Jean Gao, Avinash C. Kak
2002	—	`conf`	Circularly establishing feature correspondences and motion estimation for object tracking via multivisit of Kalman filtering. Image Processing: Algorithms and Systems Jean Gao, Akio Kosaka
2001	A	`conf`	Multi-Visit of Kalman Filtering for Semantic Object Tracking. ICME Jean Gao, Akio Kosaka
1999	—	`conf`	Interactive Color Image Segmentation Editor Driven by Active Contour Model. ICIP (3) Jean Gao, Akio Kosaka, Avinash C. Kak
1998	—	`conf`	A Deformable Model for Human Organ Extraction. ICIP (3) Jean Gao, Akio Kosaka, Avinash C. Kak