Jean-Loup Faulon

38 papers A 1B 1Journal 31Unranked 5
YearRankTypeTitle / Venue / Authors
2025 B conf
Estimating the Learning Capacity of Bacterial Metabolic Networks.
IDA
Bastien Mollet, Paul Ahavi, Antoine Cornuéjols, Jean-Loup Faulon, Evelyne Lutton, Alberto Tonda
2025 J jnl
Reverse engineering molecules from fingerprints through deterministic enumeration and generative models.
J. Cheminformatics
Philippe Meyer, Thomas Duigou, Guillaume Gricourt, Jean-Loup Faulon
2019 J jnl
RetroRules: a database of reaction rules for engineering biology.
Nucleic Acids Res.
Thomas Duigou, Melchior du Lac, Pablo Carbonell, Jean-Loup Faulon
2018 J jnl
PartsGenie: an integrated tool for optimizing and sharing synthetic biology parts.
Bioinform.
Neil Swainston, Mark Dunstan, Adrian J. Jervis, Christopher J. Robinson, Pablo Carbonell, Alan R. Williams, Jean-Loup Faulon, Nigel S. Scrutton, Douglas B. Kell
2018 J jnl
Selenzyme: enzyme selection tool for pathway design.
Bioinform.
Pablo Carbonell, Jerry Wong, Neil Swainston, Eriko Takano, Nicholas J. Turner, Nigel S. Scrutton, Douglas B. Kell, Rainer Breitling, Jean-Loup Faulon
2017 J jnl
Molecular structures enumeration and virtual screening in the chemical space with RetroPath2.0.
J. Cheminformatics
Mathilde Koch, Thomas Duigou, Pablo Carbonell, Jean-Loup Faulon
2016 J jnl
SensiPath: computer-aided design of sensing-enabling metabolic pathways.
Nucleic Acids Res.
Baudoin Delépine, Vincent Libis, Pablo Carbonell, Jean-Loup Faulon
2014 J jnl
PrecisePrimer: an easy-to-use web server for designing PCR primers for DNA library cloning and DNA shuffling.
Nucleic Acids Res.
Cyrille Pauthenier, Jean-Loup Faulon
2014 — conf
XTMS in Action: Retrosynthetic Design in the Extended Metabolic Space of Heterologous Pathways for High-Value Compounds.
CMSB
Baudoin Delépine, Pablo Carbonell, Jean-Loup Faulon
2014 J jnl
XTMS: pathway design in an eXTended metabolic space.
Nucleic Acids Res.
Pablo Carbonell, Pierre Parutto, Joan Hérisson, Shashi Bhushan Pandit, Jean-Loup Faulon
2013 — conf
PMG: Multi-core Metabolite Identification.
CS2Bio
Mohammad Mahdi Jaghoori, Sung-Shik T. Q. Jongmans, Frank S. de Boer, Julio E. Peironcely, Jean-Loup Faulon, Theo H. Reijmers, Thomas Hankemeier
2013 J jnl
Statistical ensemble analysis for simulating extrinsic noise-driven response in NF-κ.
BMC Syst. Biol.
Jaewook Joo, Steven J. Plimpton, Jean-Loup Faulon
2013 J jnl
Stereo Signature Molecular Descriptor.
J. Chem. Inf. Model.
Pablo Carbonell, Lars Carlsson, Jean-Loup Faulon
2012 J jnl
Cheminformatics.
Commun. ACM
Jörg K. Wegner, Aaron D. Sterling, Rajarshi Guha, Andreas Bender, Jean-Loup Faulon, Janna Hastings, Noel M. O'Boyle, John P. Overington, Herman van Vlijmen, Egon L. Willighagen
2012 J jnl
Enumerating metabolic pathways for the production of heterologous target chemicals in chassis organisms.
BMC Syst. Biol.
Pablo Carbonell, Davide Fichera, Shashi Bhushan Pandit, Jean-Loup Faulon
2012 J jnl
OMG: open molecule generator.
J. Cheminformatics
Julio E. Peironcely, Miguel Rojas-Chertó, Davide Fichera, Theo H. Reijmers, Leon Coulier, Jean-Loup Faulon, Thomas Hankemeier
2011 J jnl
A retrosynthetic biology approach to metabolic pathway design for therapeutic production.
BMC Syst. Biol.
Pablo Carbonell, Anne-Gaëlle Planson, Davide Fichera, Jean-Loup Faulon
2010 J jnl
Disparate data fusion for protein phosphorylation prediction.
Ann. Oper. Res.
Genetha A. Gray, Pamela J. Williams, W. Michael Brown, Jean-Loup Faulon, Kenneth L. Sale
2010 J jnl
Molecular signatures-based prediction of enzyme promiscuity.
Bioinform.
Pablo Carbonell, Jean-Loup Faulon
2008 J jnl
Genome scale enzyme-metabolite and drug-target interaction predictions using the signature molecular descriptor.
Bioinform.
Jean-Loup Faulon, Milind Misra, Shawn Martin, Ken Sale, Rajat Sapra
2007 J jnl
Boolean dynamics of genetic regulatory networks inferred from microarray time series data.
Bioinform.
Shawn Martin, Zhaoduo Zhang, Anthony Martino, Jean-Loup Faulon
2006 J jnl
Designing Novel Polymers with Targeted Properties Using the Signature Molecular Descriptor.
J. Chem. Inf. Model.
W. Michael Brown, Shawn Martin, Mark D. Rintoul, Jean-Loup Faulon
2005 J jnl
A deterministic algorithm for constrained enumeration of transmembrane protein folds.
Comput. Biol. Chem.
W. Michael Brown, Jean-Loup Faulon, Ken Sale
2005 — conf
Inverse Design of Large Molecules using Linear Diophantine Equations.
CSB Workshops
Shawn Martin, W. Michael Brown, Jean-Loup Faulon, Derick C. Weis, Donald P. Visco
2005 J jnl
Predicting protein-protein interactions using signature products.
Bioinform.
Shawn Martin, Diana C. Roe, Jean-Loup Faulon
2005 J jnl
Reverse engineering chemical structures from molecular descriptors: how many solutions?
J. Comput. Aided Mol. Des.
Jean-Loup Faulon, W. Michael Brown, Shawn Martin
2004 — conf
Dynamical Robustness in Gene Regulatory Networks.
CSB
Jean-Loup Faulon, Shawn Martin, Robert D. Carr
2004 — conf
Inferring Genetic Networks from Microarray Data.
CSB
Shawn Martin, George Davidson, Elebeoba E. May, Jean-Loup Faulon, Margaret Werner-Washburne
2004 J jnl
The Signature Molecular Descriptor. 4. Canonizing Molecules Using Extended Valence Sequences.
J. Chem. Inf. Model.
Jean-Loup Faulon, Michael J. Collins, Robert D. Carr
2003 J jnl
The Signature Molecular Descriptor. 1. Using Extended Valence Sequences in QSAR and QSPR Studies.
J. Chem. Inf. Comput. Sci.
Jean-Loup Faulon, Donald P. Visco Jr., Ramdas S. Pophale
2003 J jnl
The Signature Molecular Descriptor. 2. Enumerating Molecules from Their Extended Valence Sequences.
J. Chem. Inf. Comput. Sci.
Jean-Loup Faulon, Carla J. Churchwell, Donald P. Visco Jr.
2001 J jnl
Stochastic Generator of Chemical Structure. 3. Reaction Network Generation.
J. Chem. Inf. Comput. Sci.
Jean-Loup Faulon, Allen G. Sault
2001 J jnl
Stochastic generator of chemical structure. 4. Building polymeric systems with specified properties.
J. Comput. Chem.
Jean-Loup Faulon
1998 J jnl
Isomorphism, Automorphism Partitioning, and Canonical Labeling Can Be Solved in Polynomial-Time for Molecular Graphs.
J. Chem. Inf. Comput. Sci.
Jean-Loup Faulon
1997 A conf
Massively Parallel Simulations of Diffusion in Dense Polymeric Structures.
SC
Jean-Loup Faulon, J. David Hobbs, David M. Ford, Robert T. Wilcox
1996 J jnl
Stochastic Generator of Chemical Structure, 2. Using Simulated Annealing To Search the Space of Constitutional Isomers.
J. Chem. Inf. Comput. Sci.
Jean-Loup Faulon
1994 J jnl
Stochastic Generator of Chemical Structure. 1. Application to the Structure Elucidation of Large Molecules.
J. Chem. Inf. Comput. Sci.
Jean-Loup Faulon
1992 J jnl
On using graph-equivalent classes for the structure elucidation of large molecules.
J. Chem. Inf. Comput. Sci.
Jean-Loup Faulon