Jean-Fred Fontaine

17 papers Journal 15Unranked 2
YearRankTypeTitle / Venue / Authors
2022 J jnl
Batch effect detection and correction in RNA-seq data using machine-learning-based automated assessment of quality.
BMC Bioinform.
Maximilian Sprang, Miguel A. Andrade-Navarro, Jean-Fred Fontaine
2021 J jnl
LipiDisease: associate lipids to diseases using literature mining.
Bioinform.
Piyush More, Laura Bindila, Philipp Wild, Miguel A. Andrade-Navarro, Jean-Fred Fontaine
2017 — conf
Disease-Genes Must Guide Data Source Integration in the Gene Prioritization Process.
CIBB
Marco Frasca, Jean-Fred Fontaine, Giorgio Valentini, Marco Mesiti, Marco Notaro, Dario Malchiodi, Miguel A. Andrade-Navarro
2017 — conf
Lost Strings in Genomes: What Sense Do They Make?
IWBBIO (2)
Michael G. Sadovsky, Jean-Fred Fontaine, Miguel A. Andrade-Navarro, Yury Yakubailik, Natalia Rudenko
2014 J jnl
Alkemio: association of chemicals with biomedical topics by text and data mining.
Nucleic Acids Res.
José A. Gijón-Correas, Miguel A. Andrade-Navarro, Jean-Fred Fontaine
2014 J jnl
CellFinder: a cell data repository.
Nucleic Acids Res.
Harald Stachelscheid, Stefanie Seltmann, Fritz Lekschas, Jean-Fred Fontaine, Nancy Mah, Mariana L. Neves, Miguel A. Andrade-Navarro, Ulf Leser, Andreas Kurtz
2013 J jnl
Adding Protein Context to the Human Protein-Protein Interaction Network to Reveal Meaningful Interactions.
PLoS Comput. Biol.
Martin H. Schaefer, Tiago J. S. Lopes, Nancy Mah, Jason E. Shoemaker, Yukiko Matsuoka, Jean-Fred Fontaine, Caroline Louis-Jeune, Amie J. Eisfeld, Gabriele Neumann, Carol Perez-Iratxeta, Yoshihiro Kawaoka, Hiroaki Kitano, Miguel A. Andrade-Navarro
2013 J jnl
CELDA - an ontology for the comprehensive representation of cells in complex systems.
BMC Bioinform.
Stefanie Seltmann, Harald Stachelscheid, Alexander Damaschun, Ludger Jansen, Fritz Lekschas, Jean-Fred Fontaine, Throng-Nghia Nguyen-Dobinsky, Ulf Leser, Andreas Kurtz
2013 J jnl
Preliminary evaluation of the CellFinder literature curation pipeline for gene expression in kidney cells and anatomical parts.
Database J. Biol. Databases Curation
Mariana L. Neves, Alexander Damaschun, Nancy Mah, Fritz Lekschas, Stefanie Seltmann, Harald Stachelscheid, Jean-Fred Fontaine, Andreas Kurtz, Ulf Leser
2013 J jnl
Using cited references to improve the retrieval of related biomedical documents.
BMC Bioinform.
Francisco M. Ortuño Guzman, Ignacio Rojas, Miguel A. Andrade-Navarro, Jean-Fred Fontaine
2011 J jnl
Génie: literature-based gene prioritization at multi genomic scale.
Nucleic Acids Res.
Jean-Fred Fontaine, Florian Priller, Adriano Barbosa-Silva, Miguel A. Andrade-Navarro
2011 J jnl
PESCADOR, a web-based tool to assist text-mining of biointeractions extracted from PubMed queries.
BMC Bioinform.
Adriano Barbosa-Silva, Jean-Fred Fontaine, Elisa R. Donnard, Fernanda Stussi, José Miguel Ortega, Miguel A. Andrade-Navarro
2011 J jnl
Tissue-specific subnetworks and characteristics of publicly available human protein interaction databases.
Bioinform.
Tiago J. S. Lopes, Martin H. Schaefer, Jason E. Shoemaker, Yukiko Matsuoka, Jean-Fred Fontaine, Gabriele Neumann, Miguel A. Andrade-Navarro, Yoshihiro Kawaoka, Hiroaki Kitano
2010 J jnl
LAITOR - Literature Assistant for Identification of Terms co-Occurrences and Relationships.
BMC Bioinform.
Adriano Barbosa-Silva, Theodoros G. Soldatos, Ivan L. F. Magalhães, Georgios A. Pavlopoulos, Jean-Fred Fontaine, Miguel A. Andrade-Navarro, Reinhard Schneider, José Miguel Ortega
2009 J jnl
MedlineRanker: flexible ranking of biomedical literature.
Nucleic Acids Res.
Jean-Fred Fontaine, Adriano Barbosa-Silva, Martin H. Schaefer, Matthew R. Huska, Enrique M. Muro, Miguel A. Andrade-Navarro
2005 J jnl
Computing expectation values for RNA motifs using discrete convolutions.
BMC Bioinform.
André Lambert, Matthieu Legendre, Jean-Fred Fontaine, Daniel Gautheret
2004 J jnl
The ERPIN server: an interface to profile-based RNA motif identification.
Nucleic Acids Res.
André Lambert, Jean-Fred Fontaine, Matthieu Legendre, Fabrice Leclerc, Emmanuelle Permal, François Major, Harald Putzer, Olivier Delfour, Bernard Michot, Daniel Gautheret