Jean-Christophe Olivo-Marin

139 papers B 28Journal 32Unranked 79

Year	Rank	Type	Title / Venue / Authors
2026	J	`jnl`	Time-series analysis of cellular shapes using transported velocity fields. Pattern Recognit. Ximu Deng, Rituparna Sarkar, Elisabeth Labruyere, Jean-Christophe Olivo-Marin, Anuj Srivastava
2025	—	`conf`	Deep Multitask Learning for Automated Tissue Segmentation and Cell Detection. EUSIPCO Mohamed Mounib Benimam, Astri Frafjord, Alexandre Corthay, Thibault Lagache, Jean-Christophe Olivo-Marin, Vannary Meas-Yedid
2025	J	`jnl`	Estimation of Stiffness Maps in Deforming Cells Through Optical Flow With Bounded Curvature. IEEE Trans. Medical Imaging Yekta Kesenci, Aleix Boquet-Pujadas, Michael Unser, Jean-Christophe Olivo-Marin
2025	—	`conf`	Neural-Network Model for Characterizing Stochastic Dynamic Variability of Cellular Particles. ISBI M. Doggaz, A. Brelot, Jean-Christophe Olivo-Marin, Thibault Lagache, Giacomo Nardi
2025	J	`jnl`	SAMJ: Fast Image Annotation on ImageJ/Fiji via Segment Anything Model. CoRR Carlos Garcia-Lopez-de-Haro, Caterina Fuster-Barceló, Curtis T. Rueden, Jónathan Heras, Vladimír Ulman, Daniel Franco-Barranco, Adrián Inés, Kevin W. Eliceiri, Jean-Christophe Olivo-Marin, Jean-Yves Tinevez, Daniel Sage, Arrate Muñoz-Barrutia
2025	—	`conf`	SINETRA: A Versatile Framework for Evaluating Single Neuron Tracking in Behaving Animals. ISBI Raphael Reme, Alasdair Newson, Elsa D. Angelini, Jean-Christophe Olivo-Marin, Thibault Lagache
2024	J	`jnl`	Deep ContourFlow: Advancing Active Contours with Deep Learning. CoRR Antoine Habis, Vannary Meas-Yedid, Elsa D. Angelini, Jean-Christophe Olivo-Marin
2024	—	`conf`	Motion Classification Based on Geometrical Features of Trajectories. ISBI M. Santos Sano, A. Brelot, Jean-Christophe Olivo-Marin, Thibault Lagache, Giacomo Nardi
2024	—	`conf`	Particle Tracking in Biological Images with Optical-Flow Enhanced Kalman Filtering. ISBI Raphael Reme, Alasdair Newson, Elsa D. Angelini, Jean-Christophe Olivo-Marin, Thibault Lagache
2024	J	`jnl`	SINETRA: a Versatile Framework for Evaluating Single Neuron Tracking in Behaving Animals. CoRR Raphael Reme, Alasdair Newson, Elsa D. Angelini, Jean-Christophe Olivo-Marin, Thibault Lagache
2024	J	`jnl`	Scribble-based fast weak-supervision and interactive corrections for segmenting whole slide images. CoRR Antoine Habis, Roy Rosman Nathanson, Vannary Meas-Yedid, Elsa D. Angelini, Jean-Christophe Olivo-Marin
2024	—	`conf`	Semi-Supervised Segmentation with Topological Penalization for Quantifying Retinal Degeneration in Histological Sections. ISBI Benjamin Dorra, Giacomo Nardi, Antoine Habis, Jean-Philippe Annereau, Jean-Christophe Olivo-Marin, Luis Briseño-Roa, Vannary Meas-Yedid
2024	—	`conf`	Wavelet-Based Sparse Non-Negative Matrix Factorization for Bioluminescent Imaging Unmixing. ISBI Erwan Dereure, Christophe Kervazo, Johanne Seguin, Anikitos Garofalakis, Nathalie Mignet, Elsa D. Angelini, Jean-Christophe Olivo-Marin
2023	—	`conf`	Cross-Modal Contrastive Learning for Robust Representation of the Extracellular Matrix in Static and Dynamic Full-Field OCT Images. ISBI Diana Mandache, Emilie Benoit á la Guillaume, Jean-Christophe Olivo-Marin, Vannary Meas-Yedid
2023	J	`jnl`	Domain Adapted Multitask Learning for Segmenting Amoeboid Cells in Microscopy. IEEE Trans. Medical Imaging Suvadip Mukherjee, Rituparna Sarkar, Maria Manich, Elisabeth Labruyère, Jean-Christophe Olivo-Marin
2023	—	`conf`	Ensemble Multiple Instance Learning for Bladder Cancer Diagnosis. ISBI Alexandre Bouyssoux, Riadh Fezzani, Jean-Christophe Olivo-Marin
2023	J	`jnl`	From Nano to Macro: An overview of the IEEE Bio Image and Signal Processing Technical Committee. IEEE Signal Process. Mag. Selin Aviyente, Alejandro F. Frangi, Erik Meijering, Arrate Muñoz-Barrutia, Michael Liebling, Dimitri Van De Ville, Jean-Christophe Olivo-Marin, Jelena Kovacevic, Michael Unser
2023	—	`conf`	Probing Intracellular Elasticity with Minimal-Hessian Registration. ISBI Yekta Kesenci, Aleix Boquet-Pujadas, Michael Unser, Jean-Christophe Olivo-Marin
2023	J	`jnl`	Reformulating Optical Flow to Solve Image-Based Inverse Problems and Quantify Uncertainty. IEEE Trans. Pattern Anal. Mach. Intell. Aleix Boquet-Pujadas, Jean-Christophe Olivo-Marin
2023	—	`conf`	Sparse Non-Negative Matrix Factorization for Preclinical Bioluminescent Imaging. ISBI Erwan Dereure, Christophe Kervazo, Johanne Seguin, Anikitos Garofalakis, Nathalie Mignet, Elsa D. Angelini, Jean-Christophe Olivo-Marin
2023	—	`conf`	Tracking Intermittent Particles with Self-Learned Visual Features. ISBI Raphael Reme, Victor Piriou, Alison Hanson, Rafael Yuste, Alasdair Newson, Elsa D. Angelini, Jean-Christophe Olivo-Marin, Thibault Lagache
2022	—	`conf`	Cell Instance Segmentation Using Z-Stacks in Digital Cytology. ISBI Alexandre Bouyssoux, Riadh Fezzani, Jean-Christophe Olivo-Marin
2022	—	`conf`	Characterizing Cell Populations Using Statistical Shape Modes. ISBI Ximu Deng, Rituparna Sarkar, Elisabeth Labruyere, Jean-Christophe Olivo-Marin, Anuj Srivastava
2022	B	`conf`	Characterizing Cell Shape Distributions Using k-Mode Kernel Mixtures. ICPR Ximu Deng, Anuj Srivastava, Rituparna Sarkar, Elisabeth Labruyère, Jean-Christophe Olivo-Marin
2022	B	`conf`	PDE-Constrained Optimization for Nuclear Mechanics. ICIP Yekta Kesenci, Aleix Boquet-Pujadas, Emma van Bodegraven, Sandrine Étienne-Manneville, Elisabeth Labruyère, Jean-Christophe Olivo-Marin
2022	B	`conf`	Smart Learning of Click and Refine for Nuclei Segmentation on Histology Images. ICIP Antoine Habis, Vannary Meas-Yedid, Daniel Felipe Gonzalez Obando, Jean-Christophe Olivo-Marin, Elsa D. Angelini
2022	—	`conf`	Spatial Analysis For Histopathology: A Statistical Approach. ISBI Suvadip Mukherjee, Vannary Meas-Yedid, Marc Bokobza, Thibault Lagache, Alexandre Corthay, Jean-Christophe Olivo-Marin
2022	—	`conf`	Statistical Coupling Between time Point-Processes. ISBI Samuel Kubler, Jean-Christophe Olivo-Marin, Thibault Lagache
2022	B	`conf`	The Lifecycle of a Neural Network in the Wild: A Multiple Instance Learning Study on Cancer Detection from Breast Biopsies Imaged with Novel Technique. ICIP Diana Mandache, Emilie Benoit á la Guillaume, Y. Badachi, Jean-Christophe Olivo-Marin, Vannary Meas-Yedid
2021	—	`conf`	A Min-Max Based Hyperparameter Estimation For Domain-Adapted Segmentation Of Amoeboid Cells. ISBI Suvadip Mukherjee, Rituparna Sarkar, Elisabeth Labruyère, Jean-Christophe Olivo-Marin
2021	—	`conf`	A Robust and Versatile Framework to Compare Spike Detection Methods in Calcium Imaging of Neuronal Activity. ISBI Samuel Kubler, Suvadip Mukherjee, Jean-Christophe Olivo-Marin, Thibault Lagache
2021	J	`jnl`	Bioimage Analysis and Cell Motility. Patterns Aleix Boquet-Pujadas, Jean-Christophe Olivo-Marin, Nancy Guillen
2021	—	`conf`	Blind Source Separation In Dynamic Cell Imaging Using Non-Negative Matrix Factorization Applied To Breast Cancer Biopsies. ISBI Diana Mandache, Emilie Benoit á la Guillaume, Jean-Christophe Olivo-Marin, Vannary Meas-Yedid
2021	J	`jnl`	Evaluating the Stability of Spatial Keypoints via Cluster Core Correspondence Index. IEEE Trans. Image Process. Suvadip Mukherjee, Thibault Lagache, Jean-Christophe Olivo-Marin
2021	—	`conf`	Leveraging Global Diagnosis For Tumor Localization In Dynamic Cell Imaging Of Breast Cancer Tissue Towards Fast Biopsying. ISBI Diana Mandache, Emilie Benoit á la Guillaume, Marie-Christine Mathieu, Jean-Christophe Olivo-Marin, Vannary Meas-Yedid
2021	—	`conf`	Morphological Reconstruction of Detached Dendritic Spines via Geodesic Path Prediction. ISBI Sammit Jain, Suvadip Mukherjee, Lydia Danglot, Jean-Christophe Olivo-Marin
2021	—	`conf`	Nu3D: 3D Nuclei Segmentation from Light-Sheet Microscopy Images of the Embryonic Heart. ISBI Rituparna Sarkar, Daniel Darby, Héloise Foucambert, Sigolene M. Meilhac, Jean-Christophe Olivo-Marin
2020	B	`conf`	Extended Depth of Field Preserving Color Fidelity For Automated Digital Cytology. ICPR Alexandre Bouyssoux, Riadh Fezzani, Jean-Christophe Olivo-Marin
2020	J	`jnl`	Generalizing the Statistical Analysis of Objects' Spatial Coupling in Bioimaging. IEEE Signal Process. Lett. Suvadip Mukherjee, Catalina Gonzalez-Gomez, Lydia Danglot, Thibault Lagache, Jean-Christophe Olivo-Marin
2020	B	`conf`	Learning to segment clustered amoeboid cells from brightfield microscopy via multi-task learning with adaptive weight selection. ICPR Rituparna Sarkar, Suvadip Mukherjee, Elisabeth Labruyère, Jean-Christophe Olivo-Marin
2020	J	`jnl`	Learning to segment clustered amoeboid cells from brightfield microscopy via multi-task learning with adaptive weight selection. CoRR Rituparna Sarkar, Suvadip Mukherjee, Elisabeth Labruyère, Jean-Christophe Olivo-Marin
2020	B	`conf`	Modeling Shape Dynamics During Cell Motility in Microscopy Videos. ICIP Ximu Deng, Rituparna Sarkar, Elisabeth Labruyere, Jean-Christophe Olivo-Marin, Anuj Srivastava
2019	—	`conf`	Icytomine: A User-Friendly Tool for Integrating Workflows on Whole Slide Images. ECDP Daniel Felipe Gonzalez Obando, Diana Mandache, Jean-Christophe Olivo-Marin, Vannary Meas-Yedid
2019	—	`conf`	Tracking and line integration of diffuse cellular subdomains by mesh advection. EMBC Aleix Boquet-Pujadas, Cecilia Grimaldi, Erez Raz, Jean-Christophe Olivo-Marin
2019	—	`conf`	Vector-Based Morphological Operations on Polygons Using Straight Skeletons for Digital Pathology. DGCI Daniel Felipe Gonzalez Obando, Jean-Christophe Olivo-Marin, Laurent Wendling, Vannary Meas-Yedid
2018	—	`conf`	Basal cell carcinoma detection in full field OCT images using convolutional neural networks. ISBI Diana Mandache, E. Dalimier, J. R. Durkin, C. Boceara, Jean-Christophe Olivo-Marin, Vannary Meas-Yedid
2018	J	`jnl`	Denoising of Microscopy Images: A Review of the State-of-the-Art, and a New Sparsity-Based Method. IEEE Trans. Image Process. William Meiniel, Jean-Christophe Olivo-Marin, Elsa D. Angelini
2018	—	`conf`	Morphological operations on polygons using straight skeletons for digital pathology. ISBI Daniel Felipe Gonzalez Obando, Jean-Christophe Olivo-Marin, Vannary Meas-Yedid
2018	—	`conf`	Unsupervised analysis of mouse social behaviour reveals how hyperactivity impacts social aspects in a mouse model of autism. ISBI Oscar Bauer, Thomas Bourgeron, Jean-Christophe Olivo-Marin, Elodie Ey, Fabrice de Chaumont
2017	—	`conf`	Combining global tracking with statistical classification to analyze endocytosis dynamics using TIRF microscopy. ISBI Thibault Lagache, Giacomo Nardi, Laetitia Bertot, Alexandre Grassart, Nathalie Sauvonnet, Jean-Christophe Olivo-Marin
2017	—	`conf`	Multi-staining registration of large histology images. ISBI Daniel F. Gonzalez Obando, Astri Frafjord, Inger Oynebraten, Alexandre Corthay, Jean-Christophe Olivo-Marin, Vannary Meas-Yedid
2017	—	`conf`	Quad-edge active contours for biomedical image segmentation. ISBI Daniel F. Gonzalez Obando, Lauriane Rohfritsch, Manon Faure, Lydia Danglot, Vannary Meas-Yedid, Jean-Christophe Olivo-Marin, Alexandre Cecilien Dufour
2017	—	`conf`	Reducing data acquisition for fast Structured Illumination Microscopy using Compressed Sensing. ISBI William Meiniel, Piernicola Spinicelli, Elsa D. Angelini, Alexandra Fragola, Vincent Loriette, François Orieux, Eduardo Sepulveda, Jean-Christophe Olivo-Marin
2017	—	`conf`	Unbiased analysis of mouse social behaviour using unsupervised machine learning. ISBI Oscar Bauer, Anne-Marie Le Sourd, Giacomo Nardi, Thomas Bourgeron, Jean-Christophe Olivo-Marin, Elodie Ey, Fabrice de Chaumont
2016	J	`jnl`	A Guided Tour of Selected Image Processing and Analysis Methods for Fluorescence and Electron Microscopy. IEEE J. Sel. Top. Signal Process. Charles Kervrann, Carlos Oscar Sánchez Sorzano, Scott T. Acton, Jean-Christophe Olivo-Marin, Michael Unser
2016	—	`conf`	An approach for detection of glomeruli in multisite digital pathology. ISBI Raphaël Marée, Stephane Dallongeville, Jean-Christophe Olivo-Marin, Vannary Meas-Yedid
2016	—	`conf`	Biophysical measurements in 2D and 3D live cell imaging using fluid dynamics and optical flow. ISBI Aleix Boquet-Pujadas, Maria Manich, Nancy Guillen, Jean-Christophe Olivo-Marin, Alexandre Cecilien Dufour
2016	J	`jnl`	Introduction to the Issue on Advanced Signal Processing in Microscopy and Cell Imaging. IEEE J. Sel. Top. Signal Process. Charles Kervrann, Scott T. Acton, Jean-Christophe Olivo-Marin, Carlos Oscar Sánchez Sorzano, Michael Unser
2016	—	`conf`	Sparsity-based simplification of spectral-domain optical coherence tomography images of cardiac samples. ISBI William Meiniel, Yu Gan, Christine P. Hendon, Jean-Christophe Olivo-Marin, Andrew F. Laine, Elsa D. Angelini
2015	—	`conf`	Image denoising by multiple compressed sensing reconstructions. ISBI William Meiniel, Yoann Le Montagner, Elsa D. Angelini, Jean-Christophe Olivo-Marin
2015	J	`jnl`	Signal Processing Challenges in Quantitative 3-D Cell Morphology: More than meets the eye. IEEE Signal Process. Mag. Alexandre Cecilien Dufour, Tzu-Yu Liu, Christel Ducroz, Robin Tournemenne, Beryl Cummings, Roman Thibeaux, Nancy Guillen, Alfred O. Hero III, Jean-Christophe Olivo-Marin
2015	B	`conf`	Using steerable wavelets and minimal paths to reconstruct automatically filaments in fluorescence imaging. ICIP Thibault Lagache, Quentin Marcou, Antoine Bardonnet, Brice Rotureau, Philippe Bastin, Jean-Christophe Olivo-Marin
2014	—	`conf`	3D shape analysis using overcomplete spherical wavelets: Application to BLEB detection in cell biology. ISBI Robin Tournemenne, Christel Ducroz, Jean-Christophe Olivo-Marin, Alexandre Dufour
2014	—	`conf`	A statistical analysis of spatial clustering along cell filaments using Ripley's K function. ISBI Mariña López-Yunta, Thibault Lagache, Julien Santi-Rocca, Philippe Bastin, Jean-Christophe Olivo-Marin
2014	J	`jnl`	An Unbiased Risk Estimator for Image Denoising in the Presence of Mixed Poisson-Gaussian Noise. IEEE Trans. Image Process. Yoann Le Montagner, Elsa D. Angelini, Jean-Christophe Olivo-Marin
2014	—	`conf`	Fluid dynamics modeling of cell and membrane deformations. ISBI Costanza Simoncini, Timothee Lecomte, Roman Thibeaux, Nancy Guillen, Alexandre Dufour, Jean-Christophe Olivo-Marin
2013	—	`conf`	A statistical analysis of spatial colocalization using Ripley's K function. ISBI Thibault Lagache, Vannary Meas-Yedid, Jean-Christophe Olivo-Marin
2013	B	`conf`	Automatic detection of 3D cell protrusions using spherical wavelets. ICIP Christel Ducroz, Jean-Christophe Olivo-Marin, Alexandre Dufour
2013	J	`jnl`	Extracting 3D cell parameters from dense tissue environments: application to the development of the mouse heart. Bioinform. Sorin Pop, Alexandre Dufour, Jean-Francois Le Garrec, Chiara V. Ragni, Clémire Cimper, Sigolene M. Meilhac, Jean-Christophe Olivo-Marin
2013	—	`conf`	Icy: A user-friendly environment for algorithm development and deployment. EUSIPCO Fabrice de Chaumont, Stephane Dallongeville, Thomas Provoost, Timothee Lecomte, Alexandre Dufour, Jean-Christophe Olivo-Marin
2013	—	`conf`	Image-based representation and modeling of spatiotemporal cell dynamics. ISBI Ge Yang, Jean-Christophe Olivo-Marin
2013	J	`jnl`	Multiple Hypothesis Tracking for Cluttered Biological Image Sequences. IEEE Trans. Pattern Anal. Mach. Intell. Nicolas Chenouard, Isabelle Bloch, Jean-Christophe Olivo-Marin
2013	—	`conf`	Phase retrieval with sparsity priors and application to microscopy video reconstruction. ISBI Yoann Le Montagner, Elsa D. Angelini, Jean-Christophe Olivo-Marin
2012	J	`jnl`	Bayesian Estimation for Optimized Structured Illumination Microscopy. IEEE Trans. Image Process. François Orieux, Eduardo Sepulveda, Vincent Loriette, Benoit Dubertret, Jean-Christophe Olivo-Marin
2012	—	`conf`	Characterization of cell shape and deformation in 3D using Spherical Harmonics. ISBI Christel Ducroz, Jean-Christophe Olivo-Marin, Alexandre Dufour
2012	B	`conf`	Fluid optical flow for forces and pressure field estimation in cellular biology. ICIP Timothee Lecomte, Roman Thibeaux, Nancy Guillen, Alexandre Dufour, Jean-Christophe Olivo-Marin
2012	B	`conf`	Video reconstruction using compressed sensing measurements and 3d total variation regularization for bio-imaging applications. ICIP Yoann Le Montagner, Elsa D. Angelini, Jean-Christophe Olivo-Marin
2011	J	`jnl`	3-D Active Meshes: Fast Discrete Deformable Models for Cell Tracking in 3-D Time-Lapse Microscopy. IEEE Trans. Image Process. Alexandre Dufour, Roman Thibeaux, Elisabeth Labruyere, Nancy Guillen, Jean-Christophe Olivo-Marin
2011	—	`conf`	A fast and automated framework for extraction of nuclei from cluttered 3D images in fluorescence microscopy. ISBI Sorin Pop, Alexandre Dufour, Jean-Francois Le Garrec, Chiara V. Ragni, Margaret E. Buckingham, Sigolene M. Meilhac, Jean-Christophe Olivo-Marin
2011	—	`conf`	Comparison of reconstruction algorithms in compressed sensing applied to biological imaging. ISBI Yoann Le Montagner, Elsa D. Angelini, Jean-Christophe Olivo-Marin
2011	—	`conf`	ICY: A new open-source community image processing software. ISBI Fabrice de Chaumont, Stephane Dallongeville, Jean-Christophe Olivo-Marin
2011	B	`conf`	Image filtering using anisotropic structure tensor for cell membrane enhancement in 3D microscopy. ICIP Sorin Pop, Alexandre Dufour, Jean-Christophe Olivo-Marin
2011	B	`conf`	Numerical evaluation of sampling bounds for near-optimal reconstruction in compressed sensing. ICIP Yoann Le Montagner, Marcio de Moraes Marim, Elsa D. Angelini, Jean-Christophe Olivo-Marin
2011	J	`jnl`	Special issue on whole slide microscopic image processing. Comput. Medical Imaging Graph. Olivier Lezoray, Metin N. Gurcan, Ali Can, Jean-Christophe Olivo-Marin
2011	—	`conf`	Spherical Harmonics based extraction and annotation of cell shape in 3D time-lapse microscopy sequences. EMBC Christel Ducroz, Jean-Christophe Olivo-Marin, Alexandre Dufour
2011	—	`conf`	Statistical color texture descriptors for histological images analysis. ISBI Nicolas Hervé, Aude Servais, Eric Thervet, Jean-Christophe Olivo-Marin, Vannary Meas-Yedid
2011	J	`jnl`	Trends in Bioimaging and Signal Processing [In the Spotlight]. IEEE Signal Process. Mag. Jean-Christophe Olivo-Marin, Michael Unser, Laure Blanc-Féraud, Andrew Laine, Boudewijn P. F. Lelieveldt
2011	—	`conf`	Wavefront sensing for aberration modeling in fluorescence macroscopy. ISBI Praveen Pankajakshan, Alain Dieterlen, Gilbert Engler, Zvi Kam, Laure Blanc-Féraud, Josiane Zerubia, Jean-Christophe Olivo-Marin
2010	J	`jnl`	Combining Local Filtering and Multiscale Analysis for Edge, Ridge, and Curvilinear Objects Detection. IEEE Trans. Image Process. Sylvain Berlemont, Jean-Christophe Olivo-Marin
2010	J	`jnl`	Compressed Sensing with off-axis frequency-shifting holography CoRR Marcio de Moraes Marim, Michael Atlan, Elsa D. Angelini, Jean-Christophe Olivo-Marin
2010	—	`conf`	Compressed sensing for digital holographic microscopy. ISBI Marcio de Moraes Marim, Michael Atlan, Elsa D. Angelini, Jean-Christophe Olivo-Marin
2010	B	`conf`	Curvelet analysis of kymograph for tracking bi-directional particles in fluorescence microscopy images. ICIP Nicolas Chenouard, Johanna Buisson, Isabelle Bloch, Philippe Bastin, Jean-Christophe Olivo-Marin
2010	B	`conf`	Improving histology images segmentation through spatial constraints and supervision. ICIP Nicolas Hervé, Aude Servais, Eric Thervet, Jean-Christophe Olivo-Marin, Vannary Meas-Yedid
2010	B	`conf`	Tracking multiple articulated objects using physics engines: Improvement using multi scale decomposition and quadtrees. ICIP Fabrice de Chaumont, Stephane Dallongeville, Nicolas Chenouard, Jean-Christophe Olivo-Marin
2009	—	`conf`	A Compressed Sensing Approach for Biological Microscopic Image Processing. ISBI Marcio de Moraes Marim, Elsa D. Angelini, Jean-Christophe Olivo-Marin
2009	B	`conf`	Compressed Sensing in microscopy with random projections in the Fourier domain. ICIP Marcio de Moraes Marim, Elsa D. Angelini, Jean-Christophe Olivo-Marin
2009	—	`conf`	Multiple Hypothesis Tracking in Microscopy Images. ISBI Nicolas Chenouard, Isabelle Bloch, Jean-Christophe Olivo-Marin
2009	B	`conf`	Multiple hypothesis tracking in cluttered condition. ICIP Nicolas Chenouard, Isabelle Bloch, Jean-Christophe Olivo-Marin
2009	B	`conf`	Particle tracking in fluorescent microscopy images improved by morphological source separation. ICIP Nicolas Chenouard, Isabelle Bloch, Jean-Christophe Olivo-Marin
2009	B	`conf`	Tracking articulated objects with physics engines. ICIP Fabrice de Chaumont, Alexandre Dufour, Jean-Christophe Olivo-Marin
2009	—	`conf`	Using Physics Engines to Track Objects in Images. ISBI Fabrice de Chaumont, Alexandre Dufour, Pierre Serreau, Johnathan Chabout, Sylvia Münter, Friedrich Frischknecht, Sylvie Granon, Jean-Christophe Olivo-Marin
2008	—	`conf`	A multi-threaded program architecture for an asynchronous and highly responsive GUI for automatic neuronal survival quantification. ISBI Fabrice de Chaumont, Nicolas Chenouard, Aurelie Mouret, Pierre Marie Lledo, Jean-Christophe Olivo-Marin
2008	B	`conf`	Automated quantification of cell endocytosis using active contours and wavelets. ICPR Alexandre Dufour, Vannary Meas-Yedid, Alexandre Grassart, Jean-Christophe Olivo-Marin
2008	—	`conf`	Blind deconvolution for diffraction-limited fluorescence microscopy. ISBI Praveen Pankajakshan, Bo Zhang, Laure Blanc-Féraud, Zvi Kam, Jean-Christophe Olivo-Marin, Josiane Zerubia
2008	—	`conf`	Detection of full length microtubules in live microscopy images. ISBI Sylvain Berlemont, Régis Tournebize, Aaron Bensimon, Jean-Christophe Olivo-Marin
2008	B	`conf`	Fast and automatic reconstruction of structured illumination microscopy images with multiscale products. ICPR Clovis Tauber, Pedro Felipe Gardeazabal Rodriguez, Vincent Loriette, Nicolas Chenouard, Benoit Dubertret, Jean-Christophe Olivo-Marin
2008	B	`conf`	Feature-aided particle tracking. ICIP Nicolas Chenouard, Isabelle Bloch, Jean-Christophe Olivo-Marin
2008	—	`conf`	Improving single particle localization with an empirically calibrated Gaussian kernel. ISBI Marcio de Moraes Marim, Bo Zhang, Jean-Christophe Olivo-Marin, Christophe Zimmer
2008	B	`conf`	Morphological source separation for particle tracking in complex biological environments. ICPR Nicolas Chenouard, Samantha Vernhettes, Isabelle Bloch, Jean-Christophe Olivo-Marin
2008	—	`conf`	Session MA2: Advances in bioimaging and analysis. ACSCC Jean-Christophe Olivo-Marin
2008	—	`conf`	Statistical colocalization in biological imaging with false discovery control. ISBI Bo Zhang, Nicolas Chenouard, Jean-Christophe Olivo-Marin, Vannary Meas-Yedid
2008	—	`conf`	Tracking live cells in 4D microscopy: From active surfaces to active meshes. ACSCC Alexandre Dufour, Jean-Christophe Olivo-Marin
2007	—	`conf`	Detection of Curvilinear Objects in Noisy Image using Feature-Adapted Beamlet Transform. ICASSP (1) Sylvain Berlemont, Aaron Bensimon, Jean-Christophe Olivo-Marin
2007	—	`conf`	Feature-Adapted Fast Slant Stack. ICIP (4) Sylvain Berlemont, Aaron Bensimon, Jean-Christophe Olivo-Marin
2007	—	`conf`	Multiscale Variance-Stabilizing Transform for Mixed-Poisson-Gaussian Processes and its Applications in Bioimaging. ICIP (6) Bo Zhang, Jalal Fadili, Jean-Luc Starck, Jean-Christophe Olivo-Marin
2006	—	`conf`	An Overview of Image Analysis in Multidimensional Biological Microscopy. ICASSP (5) Jean-Christophe Olivo-Marin
2006	—	`conf`	Automated image-based screening of cell cultures for cell therapy. ISBI Estelle Glory, Vannary Meas-Yedid, Georges Stamon, Christian Pinset, Jean-Christophe Olivo-Marin
2006	—	`conf`	Automated super-resolution detection of fluorescent rods in 2D. ISBI Bo Zhang, Jost Enninga, Jean-Christophe Olivo-Marin, Christophe Zimmer
2006	B	`conf`	Biophysical Active Contours for Cell Tracking I: Tension and Bending. ICIP Jacques Pecreaux, Christophe Zimmer, Jean-Christophe Olivo-Marin
2006	J	`jnl`	Multiple particle tracking in 3-D+t microscopy: method and application to the tracking of endocytosed quantum dots. IEEE Trans. Image Process. Auguste Genovesio, Tim Liedl, Valentina Emiliani, Wolfgang J. Parak, M. Coppey-Moisan, Jean-Christophe Olivo-Marin
2006	J	`jnl`	On the digital trail of mobile cells. IEEE Signal Process. Mag. Christophe Zimmer, Bo Zhang, Alexandre Dufour, Ayméric Thébaud, Sylvain Berlemont, Vannary Meas-Yedid, Jean-Christophe Olivo-Marin
2005	B	`conf`	A Quantitative Criterion to Evaluate Color Segmentations Application to Cytological Images. ACIVS Estelle Glory, Vannary Meas-Yedid, Christian Pinset, Jean-Christophe Olivo-Marin, Georges Stamon
2005	J	`jnl`	Coupled Parametric Active Contours. IEEE Trans. Pattern Anal. Mach. Intell. Christophe Zimmer, Jean-Christophe Olivo-Marin
2005	J	`jnl`	Segmenting and Tracking Fluorescent Cells in Dynamic 3-D Microscopy With Coupled Active Surfaces. IEEE Trans. Image Process. Alexandre Dufour, Vasily Shinin, S. Tajbakhsh, N. Guillen-Aghion, Jean-Christophe Olivo-Marin, Christophe Zimmer
2004	—	`conf`	A Deconvolution Method for Confocal Microscopy with Total Variation Regularization. ISBI Nicolas Dey, Laure Blanc-Féraud, Josiane Zerubia, Christophe Zimmer, Jean-Christophe Olivo-Marin, Zvi Kam
2004	—	`conf`	A Quantification Tool to Analyse Stained Cell Cultures. ICIAR (2) Estelle Glory, A. Faure, Vannary Meas-Yedid, Florence Cloppet, Christian Pinset, Georges Stamon, Jean-Christophe Olivo-Marin
2004	B	`conf`	Adaptive gating in gaussian bayesian multi-target tracking. ICIP Auguste Genovesio, Ziad Belhassine, Jean-Christophe Olivo-Marin
2004	—	`conf`	Automatic Color Space Selection for Biological Image Segmentation. ICPR (3) Vannary Meas-Yedid, Estelle Glory, E. Morelon, Christian Pinset, Georges Stamon, Jean-Christophe Olivo-Marin
2004	—	`conf`	Interacting Multiple Model Based Method to Track Moving Fluorescent Biological Spots. ISBI Jean-Christophe Olivo-Marin, Auguste Genovesio, Bo Zhang
2004	—	`conf`	Split and Merge Data Association Filter for Dense Multi-target Tracking. ICPR (4) Auguste Genovesio, Jean-Christophe Olivo-Marin
2004	—	`conf`	Tracking Fluorescent Cells With Coupled Geometric Active Contours. ISBI Christophe Zimmer, Jean-Christophe Olivo-Marin, Bo Zhang
2003	—	`conf`	Tracking of multiple fluorescent biological objects in three dimensional video microscopy. ICIP (1) Auguste Genovesio, Bo Zhang, Jean-Christophe Olivo-Marin
2002	—	`conf`	Color Image Segmentation Based on Markov Random Field Clustering for Histological Image Analysis. ICPR (1) Vannary Meas-Yedid, Sorin Tilie, Jean-Christophe Olivo-Marin
2002	J	`jnl`	Extraction of spots in biological images using multiscale products. Pattern Recognit. Jean-Christophe Olivo-Marin
2002	—	`conf`	Improving Active Contours for Segmentation and Tracking of Motile Cells in Videomicroscopy. ICPR (2) Christophe Zimmer, Elisabeth Labruyere, Vannary Meas-Yedid, Nancy Guillen, Jean-Christophe Olivo-Marin
2002	—	`conf`	Quantitative analysis of cellular shape and motility with improved active contours. ISBI Christophe Zimmer, Elisabeth Labruyere, Vannary Meas-Yedid, Nancy Guillen, Jean-Christophe Olivo-Marin
2002	J	`jnl`	Segmentation and Tracking of Migrating Cells in Videomicroscopy with Parametric Active Contours: A Tool for Cell-Based Drug Testing. IEEE Trans. Medical Imaging Christophe Zimmer, Elisabeth Labruyere, Vannary Meas-Yedid, Nancy Guillen, Jean-Christophe Olivo-Marin
2001	—	`conf`	Three dimensional spot detection by multiscale analysis. ICIP (1) G. Cuartero, Vincent Galy, Ulf Nehrbass, Vannary Meas-Yedid, Jean-Christophe Olivo-Marin
2000	B	`conf`	Active Contours for the Movement and Motility Analysis of Biological Objects. ICIP Vannary Meas-Yedid, Jean-Christophe Olivo-Marin