Javier De Las Rivas

40 papers B 1C 3Misc 2Journal 26Unranked 7
YearRankTypeTitle / Venue / Authors
2022 J jnl
Correction: Ten simple rules for organizing a bioinformatics training course in low- and middle-income countries.
PLoS Comput. Biol.
Benjamin L. Moore, Patricia Carvajal López, Paballo Abel Chauke, Marco Cristancho, Victoria Dominguez Del Angel, Selene L. Fernandez-Valverde, Amel Ghouila, Piraveen Gopalasingam, Fatma Zahra Guerfali, Alice Matimba, Sarah L. Morgan, Guilherme Oliveira, Verena Ras, Alejandro Reyes, Javier De Las Rivas, Nicola J. Mulder
2021 J jnl
Ten simple rules for organizing a bioinformatics training course in low- and middle-income countries.
PLoS Comput. Biol.
Benjamin L. Moore, Patricia Carvajal López, Paballo Abel Chauke, Marco Cristancho, Victoria Dominguez Del Angel, Selene L. Fernandez-Valverde, Amel Ghouila, Piraveen Gopalasingam, Fatma Zahra Guerfali, Alice Matimba, Sarah L. Morgan, Guilherme Oliveira, Verena Ras, Alejandro Reyes, Javier De Las Rivas, Nicola J. Mulder
2020 J jnl
A reference map of the human binary protein interactome.
Nat.
Katja Luck, Dae-Kyum Kim, Luke Lambourne, Kerstin Spirohn, Bridget E. Begg, Wenting Bian, Ruth Brignall, Tiziana Cafarelli, Francisco J. Campos-Laborie, Benoît Charloteaux, Dong-Sic Choi, Atina G. Coté, Meaghan Daley, Steven Deimling, Alice Desbuleux, Amélie Dricot, Marinella Gebbia, Madeleine F. Hardy, Nishka Kishore, Jennifer J. Knapp, István A. Kovács, Irma Lemmens, Miles W. Mee, Joseph C. Mellor, Carl Pollis, Carles Pons, Aaron D. Richardson, Sadie Schlabach, Bridget Teeking, Anupama Yadav, Mariana Babor, Dawit Balcha, Omer Basha, Christian Bowman-Colin, Suet-Feung Chin, Soon-gang Choi, Claudia Colabella, Georges Coppin, Cassandra D'Amata, David De Ridder, Steffi De Rouck, Miquel Duran-Frigola, Hanane Ennajdaoui, Florian Goebels, Liana Goehring, Anjali Gopal, Ghazal Haddad, Elodie Hatchi, Mohamed Helmy, Yves Jacob, Yoseph Kassa, Serena Landini, Roujia Li, Natascha van Lieshout, Andrew MacWilliams, Dylan Markey, Joseph N. Paulson, Sudharshan Rangarajan, John Rasla, Ashyad Rayhan, Thomas Rolland, Adriana San-Miguel, Yun Shen, Dayag Sheykhkarimli, Gloria M. Sheynkman, Eyal Simonovsky, Murat Tasan, Alexander Tejeda, Vincent Tropepe, Jean-Claude Twizere, Yang Wang, Robert J. Weatheritt, Jochen Weile, Yu Xia, Xinping Yang, Esti Yeger Lotem, Quan Zhong, Patrick Aloy, Gary D. Bader, Javier De Las Rivas, Suzanne Gaudet, Tong Hao, Janusz Rak, Jan Tavernier, David E. Hill, Marc Vidal, Frederick P. Roth, Michael A. Calderwood
2019 J jnl
APID database: redefining protein-protein interaction experimental evidences and binary interactomes.
Database J. Biol. Databases Curation
Diego Alonso-López, Francisco J. Campos-Laborie, Miguel A. Gutiérrez, Luke Lambourne, Michael A. Calderwood, Marc Vidal, Javier De Las Rivas
2019 J jnl
Bioinformatics in Latin America and SoIBio impact, a tale of spin-off and expansion around genomes and protein structures.
Briefings Bioinform.
Javier De Las Rivas, César Bonavides-Martínez, Francisco Jose Campos-Laborie
2019 J jnl
DECO: decompose heterogeneous population cohorts for patient stratification and discovery of sample biomarkers using omic data profiling.
Bioinform.
Francisco J. Campos-Laborie, Alberto Risueño, M. Ortiz-Estévez, B. Rosón-Burgo, Conrad Droste, Celia Fontanillo, Remco Loos, Jose Manuel Sánchez-Santos, Matthew W. B. Trotter, Javier De Las Rivas
2018 J jnl
Encompassing new use cases - level 3.0 of the HUPO-PSI format for molecular interactions.
BMC Bioinform.
M. Sivade Dumousseau, Diego Alonso-López, Mais G. Ammari, Glyn Bradley, Nancy H. Campbell, Arnaud Céol, Gianni Cesareni, Colin W. Combe, Javier De Las Rivas, Noemi del-Toro, Joshua Heimbach, Henning Hermjakob, Igor Jurisica, Maximilian Koch, Luana Licata, Ruth C. Lovering, David J. Lynn, Birgit H. M. Meldal, Gos Micklem, Simona Panni, Pablo Porras, Sylvie Ricard-Blum, Bernd Roechert, Lukasz Salwínski, Anjali Shrivastava, Julie M. Sullivan, Nicolas Thierry-Mieg, Yo Yehudi, Kim Van Roey, Sandra E. Orchard
2018 J jnl
JAMI: a Java library for molecular interactions and data interoperability.
BMC Bioinform.
M. Sivade Dumousseau, Maximilian Koch, Anjali Shrivastava, Diego Alonso-López, Javier De Las Rivas, Noemi del-Toro, Colin W. Combe, Birgit H. M. Meldal, Joshua Heimbach, Juri Rappsilber, Julie M. Sullivan, Yo Yehudi, Sandra E. Orchard
2017 J jnl
Bioinformatics in Latin America and SoIBio impact, a tale of spin-off and expansion around genomes and protein structures.
Briefings Bioinform.
Javier De Las Rivas, César Bonavides-Martínez, Francisco J. Campos-Laborie
2017 J jnl
Ten simple rules for forming a scientific professional society.
PLoS Comput. Biol.
Bruno A. Gaëta, Javier De Las Rivas, Paul Horton, Pieter Meysman, Nicola J. Mulder, Paolo Romano, Lonnie R. Welch
2016 J jnl
APID interactomes: providing proteome-based interactomes with controlled quality for multiple species and derived networks.
Nucleic Acids Res.
Diego Alonso-López, Miguel A. Gutiérrez, Katia P. Lopes, Carlos Prieto, Rodrigo Santamaría, Javier De Las Rivas
2016 J jnl
Identification of expression patterns in the progression of disease stages by integration of transcriptomic data.
BMC Bioinform.
Sara Aibar, María Abáigar, Francisco J. Campos-Laborie, Jose Manuel Sánchez-Santos, Jesus M. Hernandez-Rivas, Javier De Las Rivas
2016 Misc conf
Role of Nerve Growth Factor Signaling in Cancer Cell Proliferation and Survival Using a Reachability Analysis Approach.
PACBB
Gustavo Santos-García, Carolyn L. Talcott, Adrián Riesco, Beatriz Santos-Buitrago, Javier De Las Rivas
2015 — conf
Analysis of Cellular Proliferation and Survival Signaling by Using Two Ligand/Receptor Systems Modeled by Pathway Logic.
HSB
Gustavo Santos-García, Carolyn L. Talcott, Javier De Las Rivas
2015 J jnl
Functional Gene Networks: R/Bioc package to generate and analyse gene networks derived from functional enrichment and clustering.
Bioinform.
Sara Aibar, Celia Fontanillo, Conrad Droste, Javier De Las Rivas
2014 Misc conf
A Logic Computational Framework to Query Dynamics on Complex Biological Pathways.
PACBB
Gustavo Santos-García, Javier De Las Rivas, Carolyn L. Talcott
2014 — conf
Rewriting Logic and Symbolic Systems Biology applied to EGF Signaling Pathway.
IWBBIO
Gustavo Santos-García, Javier De Las Rivas, Carolyn L. Talcott
2013 J jnl
Best practices in bioinformatics training for life scientists.
Briefings Bioinform.
Allegra Via, Thomas Blicher, Erik Bongcam-Rudloff, Michelle D. Brazas, Catherine Brooksbank, Aidan Budd, Javier De Las Rivas, Jacqueline Dreyer, Pedro L. Fernandes, Celia W. G. van Gelder, Joachim Jacob, Rafael C. Jiménez, Jane E. Loveland, Federico Morán, Nicola J. Mulder, Tommi H. Nyrönen, Kristian Rother, Maria Victoria Schneider, Teresa K. Attwood
2013 J jnl
iAnn: an event sharing platform for the life sciences.
Bioinform.
Rafael C. Jiménez, Juan P. Albar, Jong Bhak, Marie-Claude Blatter, Thomas Blicher, Michelle D. Brazas, Catherine Brooksbank, Aidan Budd, Javier De Las Rivas, Jacqueline Dreyer, Marc A. van Driel, Michael J. Dunn, Pedro L. Fernandes, Celia W. G. van Gelder, Henning Hermjakob, Vassilios Ioannidis, David Phillip Judge, Pascal Kahlem, Eija Korpelainen, Hans-Joachim Kraus, Jane E. Loveland, Christine Mayer, Jennifer McDowall, Federico Morán, Nicola J. Mulder, Tommi H. Nyrönen, Kristian Rother, Gustavo A. Salazar, Reinhard Schneider, Allegra Via, Jose M. Villaveces, Ping Yu, Maria Victoria Schneider, Teresa K. Attwood, Manuel Corpas
2012 J jnl
Bioinformatics Training Network (BTN): a community resource for bioinformatics trainers.
Briefings Bioinform.
Maria Victoria Schneider, Peter Walter, Marie-Claude Blatter, James Watson, Michelle D. Brazas, Kristian Rother, Aidan Budd, Allegra Via, Celia W. G. van Gelder, Joachim Jacob, Pedro L. Fernandes, Tommi H. Nyrönen, Javier De Las Rivas, Thomas Blicher, Rafael C. Jiménez, Jane E. Loveland, Jennifer McDowall, Philip Jones, Brendan W. Vaughan, Rodrigo Lopez, Teresa K. Attwood, Catherine Brooksbank
2012 J jnl
Integrating literature-constrained and data-driven inference of signalling networks.
Bioinform.
Federica Eduati, Javier De Las Rivas, Barbara Di Camillo, Gianna Toffolo, Julio Saez-Rodriguez
2011 J jnl
Ten Simple Rules for Developing a Short Bioinformatics Training Course.
PLoS Comput. Biol.
Allegra Via, Javier De Las Rivas, Teresa K. Attwood, David Landsman, Michelle D. Brazas, Jack A. M. Leunissen, Anna Tramontano, Maria Victoria Schneider
2010 J jnl
Bioinformatics training: a review of challenges, actions and support requirements.
Briefings Bioinform.
Maria Victoria Schneider, James Watson, Teresa K. Attwood, Kristian Rother, Aidan Budd, Jennifer McDowall, Allegra Via, Pedro L. Fernandes, Tommi H. Nyrönen, Thomas Blicher, Philip Jones, Marie-Claude Blatter, Javier De Las Rivas, David Phillip Judge, Wouter van der Gool, Catherine Brooksbank
2010 J jnl
GATExplorer: Genomic and Transcriptomic Explorer; mapping expression probes to gene loci, transcripts, exons and ncRNAs.
BMC Bioinform.
Alberto Risueño, Celia Fontanillo, Marcel E. Dinger, Javier De Las Rivas
2010 J jnl
Protein-Protein Interactions Essentials: Key Concepts to Building and Analyzing Interactome Networks.
PLoS Comput. Biol.
Javier De Las Rivas, Celia Fontanillo
2009 B conf
Improving k-NN for Human Cancer Classification Using the Gene Expression Profiles.
IDA
Manuel Martín-Merino, Javier De Las Rivas
2009 — conf
Kernel Alignment
ICANN (2)
Manuel Martín-Merino, Javier De Las Rivas
2008 C conf
Classification of multiple cancer types in a Hyper Reproducing Kernel Hilbert Space.
BIBE
Ángela Blanco, Manuel Martín-Merino, Javier De Las Rivas
2008 C conf
Combining Dissimilarities in a Hyper Reproducing Kernel Hilbert Space for Complex Human Cancer Prediction.
ICMLA
Ángela Blanco, Manuel Martín-Merino, Javier De Las Rivas
2008 — ch.
Ensemble of Support Vector Machines to Improve the Cancer Class Prediction Based on the Gene Expression Profiles.
Innovations in Hybrid Intelligent Systems
Ángela Blanco, Manuel Martín-Merino, Javier De Las Rivas
2007 J jnl
APID2NET: unified interactome graphic analyzer.
Bioinform.
Juan Hernandez-Toro, Carlos Prieto, Javier De Las Rivas
2007 J jnl
Combining dissimilarity based classifiers for cancer prediction using gene expression profiles.
BMC Bioinform.
Ángela Blanco, Manuel Martín-Merino, Javier De Las Rivas
2007 — conf
Ensemble of Dissimilarity Based Classifiers for Cancerous Samples Classification.
PRIB
Ángela Blanco, Manuel Martín-Merino, Javier De Las Rivas
2007 C conf
Ensemble of Kernel Based Classifiers to Improve the Human Cancer Prediction using DNA Microarrays.
BIBE
Ángela Blanco, Manuel Martín-Merino, Javier De Las Rivas
2007 J jnl
Linear array of conserved sequence motifs to discriminate protein subfamilies: study on pyridine nucleotide-disulfide reductases.
BMC Bioinform.
César L. Avila, Viviana A. Rapisarda, Ricardo N. Farías, Javier De Las Rivas, Rosana Chehín
2007 — conf
On the Combination of Dissimilarities for Gene Expression Data Analysis.
ICANN (2)
Ángela Blanco, Manuel Martín-Merino, Javier De Las Rivas
2006 J jnl
APID: Agile Protein Interaction DataAnalyzer.
Nucleic Acids Res.
Carlos Prieto, Javier De Las Rivas
2006 J jnl
Algorithm to find gene expression profiles of deregulation and identify families of disease-altered genes.
Bioinform.
Carlos Prieto, M. J. Rivas, J. M. Sánchez, Jesús López-Fidalgo, Javier De Las Rivas
2004 — conf
Integration and Comparison of Interactome Databases.
Spanish Bioinformatics Conference
Carlos Prieto, Alberto de Luis, Javier De Las Rivas
2004 — conf
Investigating the Assignment of Probes to Transcripts in Affymetrix Microarrays.
Spanish Bioinformatics Conference
Alberto de Luis, Javier De Las Rivas