Jason Fan

12 papers B 3C 2Journal 6
YearRankTypeTitle / Venue / Authors
2025 J jnl
Direct Confidence Alignment: Aligning Verbalized Confidence with Internal Confidence In Large Language Models.
CoRR
Glenn Zhang, Treasure Mayowa, Jason Fan, Yicheng Fu, Aaron Sandoval, Sean O'Brien, Kevin Zhu
2024 J jnl
Fulgor: a fast and compact k-mer index for large-scale matching and color queries.
Algorithms Mol. Biol.
Jason Fan, Jamshed Khan, Noor Pratap Singh, Giulio Ermanno Pibiri, Rob Patro
2024 B conf
Meta-colored Compacted de Bruijn Graphs.
RECOMB
Giulio Ermanno Pibiri, Jason Fan, Rob Patro
2024 J jnl
Where the Patterns Are: Repetition-Aware Compression for Colored de Bruijn Graphs
J. Comput. Biol.
Alessio Campanelli, Giulio Ermanno Pibiri, Jason Fan, Rob Patro
2023 — —
Analyzing and indexing huge reference sequence collections.
Jason Fan
2023 C conf
Fulgor: A Fast and Compact {k-mer} Index for Large-Scale Matching and Color Queries.
WABI
Jason Fan, Noor Pratap Singh, Jamshed Khan, Giulio Ermanno Pibiri, Rob Patro
2023 B conf
Spectrum Preserving Tilings Enable Sparse and Modular Reference Indexing.
RECOMB
Jason Fan, Jamshed Khan, Giulio Ermanno Pibiri, Rob Patro
2022 J jnl
Perplexity: evaluating transcript abundance estimation in the absence of ground truth.
Algorithms Mol. Biol.
Jason Fan, Skylar Chan, Rob Patro
2022 J jnl
ScalpelSig Designs Targeted Genomic Panels from Data to Detect Activity of Mutational Signatures.
J. Comput. Biol.
Nicholas Franzese, Jason Fan, Roded Sharan, Mark D. M. Leiserson
2021 C conf
Perplexity: Evaluating Transcript Abundance Estimation in the Absence of Ground Truth.
WABI
Jason Fan, Skylar Chan, Rob Patro
2020 J jnl
Matrix (factorization) reloaded: flexible methods for imputing genetic interactions with cross-species and side information.
Bioinform.
Jason Fan, Xuan Cindy Li, Mark Crovella, Mark D. M. Leiserson
2018 B conf
A Multi-species Functional Embedding Integrating Sequence and Network Structure.
RECOMB
Mark D. M. Leiserson, Jason Fan, Anthony Cannistra, Inbar Fried, Tim Lim, Thomas Schaffner, Mark Crovella, Benjamin J. Hescott