Jason Ernst

21 papers A* 1B 3C 2Journal 13Unranked 2
YearRankTypeTitle / Venue / Authors
2026 J jnl
Learning a pairwise epigenomic and transcription factor binding association score across the human genome.
Bioinform.
Soo Bin Kwon, Jason Ernst
2023 J jnl
A Novel Cross-Layer Adaptive Fuzzy-Based Ad Hoc On-Demand Distance Vector Routing Protocol for MANETs.
IEEE Access
Fatemeh Safari, Herb Kunze, Jason Ernst, Daniel Gillis
2023 B conf
A Review of AI-based MANET Routing Protocols.
WiMob
Fatemeh Safari, Izabela Savic, Herb Kunze, Jason Ernst, Daniel Gillis
2023 J jnl
A framework for group-wise summarization and comparison of chromatin state annotations.
Bioinform.
Ha Vu, Zane Koch, Petko Fiziev, Jason Ernst
2021 C conf
Co-designing a community-led Internet assessment tool in Rigolet, Nunatsiavut, Canada.
ISTAS
Nic Durish, Rekkab Gill, Patrick Houlding, Charlie Flowers, Inez Shiwak, Jason Ernst, Daniel Gillis
2021 J jnl
It's Time to Do Something: Mitigating the Negative Impacts of Computing Through a Change to the Peer Review Process.
CoRR
Brent J. Hecht, Lauren Wilcox, Jeffrey P. Bigham, Johannes Schöning, Ehsan Hoque, Jason Ernst, Yonatan Bisk, Luigi De Russis, Lana Yarosh, Bushra Anjum, Danish Contractor, Cathy Wu
2021 — conf
M-ODD: A Standard Protocol for Reporting MANET Related Models, Simulations, and Findings.
ADHOCNETS/TRIDENTCOM
Izabela Savic, Marshall Asch, Keefer Rourke, Fatemeh Safari, Patrick Houlding, Jeremie Fraeys de Veubeke, Jason Ernst, Daniel Gillis
2021 A* conf
Marginal Contribution Feature Importance - an Axiomatic Approach for Explaining Data.
ICML
Amnon Catav, Boyang Fu, Yazeed Zoabi, Ahuva Weiss-Meilik, Noam Shomron, Jason Ernst, Sriram Sankararaman, Ran Gilad-Bachrach
2020 J jnl
An integrative approach for fine-mapping chromatin interactions.
Bioinform.
Artur Tomasz Jaroszewicz, Jason Ernst
2020 J jnl
Marginal Contribution Feature Importance - an Axiomatic Approach for The Natural Case.
CoRR
Amnon Catav, Boyang Fu, Jason Ernst, Sriram Sankararaman, Ran Gilad-Bachrach
2016 J jnl
Using genomic annotations increases statistical power to detect eGenes.
Bioinform.
Dat Duong, Jennifer Zou, Farhad Hormozdiari, Jae Hoon Sul, Jason Ernst, Buhm Han, Eleazar Eskin
2015 J jnl
Integrative analysis of 111 reference human epigenomes Open.
Nat.
Roadmap Epigenomics Consortium, Anshul Kundaje, Wouter Meuleman, Jason Ernst, Misha Bilenky, Angela Yen, Alireza Heravi Moussavi, Pouya Kheradpour, ZhiZhuo Zhang, Jianrong Wang, Michael J. Ziller, Viren Amin, John W. Whitaker, Matthew D. Schultz, Lucas D. Ward, Abhishek Sarkar, Gerald T. Quon, Richard S. Sandstrom, Matthew L. Eaton, Yi-Chieh Wu, Andreas R. Pfenning, Xinchen Wang, Melina Claussnitzer, Yaping Liu, Cristian Coarfa, R. Alan Harris, Noam Shoresh, Charles B. Epstein, Elizabeta Gjoneska, Danny Leung, Wei Xie, R. David Hawkins, Ryan Lister, Chibo Hong, Philippe Gascard, Andrew J. Mungall, Richard A. Moore, Eric Chuah, Angela Tam, Theresa K. Canfield, R. Scott Hansen, Rajinder Kaul, Peter J. Sabo, Mukul S. Bansal, Annaick Carles, Jesse R. Dixon, Kyle Kai-How Farh, Soheil Feizi, Rosa Karlic, Ah-Ram Kim, Ashwinikumar Kulkarni, Daofeng Li, Rebecca F. Lowdon, GiNell Elliott, Tim R. Mercer, Shane J. Neph, Vitor Onuchic, Paz Polak, Nisha Rajagopal, Pradipta Ray, Richard C. Sallari, Kyle T. Siebenthall, Nicholas A. Sinnott-Armstrong, Michael Stevens, Robert E. Thurman, Jie Wu, Bo Zhang, Xin Zhou, Arthur E. Beaudet, Laurie A. Boyer, Philip L. De Jager, Peggy J. Farnham, Susan J. Fisher, David Haussler, Steven J. M. Jones, Wei Li, Marco A. Marra, Michael T. McManus, Shamil R. Sunyaev, James A. Thomson, Thea D. Tlsty, Li-Huei Tsai, Wei Wang, Robert A. Waterland, Michael Q. Zhang, Lisa H. Chadwick, Bradley E. Bernstein, Joseph F. Costello, Joseph R. Ecker, Martin Hirst, Alexander Meissner, Aleksandar Milosavljevic, Bing Ren, John A. Stamatoyannopoulos, Ting Wang, Manolis Kellis
2013 J jnl
RFECS: A Random-Forest Based Algorithm for Enhancer Identification from Chromatin State.
PLoS Comput. Biol.
Nisha Rajagopal, Wei Xie, Yan Li, Uli Wagner, Wei Wang, John A. Stamatoyannopoulos, Jason Ernst, Manolis Kellis, Bing Ren
2012 J jnl
DREM 2.0: Improved reconstruction of dynamic regulatory networks from time-series expression data.
BMC Syst. Biol.
Marcel H. Schulz, William E. Devanny, Anthony Gitter, Shan Zhong, Jason Ernst, Ziv Bar-Joseph
2011 B conf
Discovery and Characterization of Chromatin States for Systematic Annotation of the Human Genome.
RECOMB
Jason Ernst, Manolis Kellis
2008 J jnl
A Semi-Supervised Method for Predicting Transcription Factor-Gene Interactions in
PLoS Comput. Biol.
Jason Ernst, Qasim K. Beg, Krin A. Kay, Gábor Balázsi, Zoltán N. Oltvai, Ziv Bar-Joseph
2008 C conf
Algorithms and Implementation for Interconnection Graph Problem.
COCOA
Hongbing Fan, Christian Hundt, Yu-Liang Wu, Jason Ernst
2008 B conf
Customized Reconfigurable Interconnection Networks for multiple application SOCS.
FPL
Hongbing Fan, Jason Ernst, Yu-Liang Wu
2008 J jnl
Impact of the solvent capacity constraint on E. coli metabolism.
BMC Syst. Biol.
Alexei Vázquez, Qasim K. Beg, Marcio A. de Menezes, Jason Ernst, Ziv Bar-Joseph, Albert-László Barabási, László G. Boros, Zoltán N. Oltvai
2006 J jnl
STEM: a tool for the analysis of short time series gene expression data.
BMC Bioinform.
Jason Ernst, Ziv Bar-Joseph
2005 — conf
Clustering short time series gene expression data.
ISMB (Supplement of Bioinformatics)
Jason Ernst, Gerard J. Nau, Ziv Bar-Joseph