Jason E. Shoemaker

13 papers Journal 12
YearRankTypeTitle / Venue / Authors
2025 J jnl
A detailed kinetic model of Eastern equine encephalitis virus replication in a susceptible host cell.
PLoS Comput. Biol.
Caroline I. Larkin, Matthew D. Dunn, Jason E. Shoemaker, William B. Klimstra, James R. Faeder
2025 J jnl
Mathematical model of influenza infection suggests JAK-STAT activity drives severe pathologies in juvenile mice.
Frontiers Appl. Math. Stat.
Lauren L. Luciani, Lauren M. Nichols, Brydie R. Huckestein, John F. Alcorn, Jason E. Shoemaker
2021 J jnl
Agent-based modeling reveals benefits of heterogeneous and stochastic cell populations during cGAS-mediated IFNβ production.
Bioinform.
Robert W. Gregg, Fathima Shabnam, Jason E. Shoemaker
2021 J jnl
DeltaNeTS+: elucidating the mechanism of drugs and diseases using gene expression and transcriptional regulatory networks.
BMC Bioinform.
Heeju Noh, Ziyi Hua, Panagiotis Chrysinas, Jason E. Shoemaker, Rudiyanto Gunawan
2021 J jnl
Multicellular spatial model of RNA virus replication and interferon responses reveals factors controlling plaque growth dynamics.
PLoS Comput. Biol.
Josua Aponte-Serrano, Jordan J. A. Weaver, T. J. Sego, James A. Glazier, Jason E. Shoemaker
2019 J jnl
A dual controllability analysis of influenza virus-host protein-protein interaction networks for antiviral drug target discovery.
BMC Bioinform.
Emily E. Ackerman, John F. Alcorn, Takeshi Hase, Jason E. Shoemaker
2013 J jnl
A comprehensive map of the influenza A virus replication cycle.
BMC Syst. Biol.
Yukiko Matsuoka, Hiromi Matsumae, Manami Katoh, Amie J. Eisfeld, Gabriele Neumann, Takeshi Hase, Samik Ghosh, Jason E. Shoemaker, Tiago J. S. Lopes, Tokiko Watanabe, Shinji Watanabe, Satoshi Fukuyama, Hiroaki Kitano, Yoshihiro Kawaoka
2013 J jnl
Adding Protein Context to the Human Protein-Protein Interaction Network to Reveal Meaningful Interactions.
PLoS Comput. Biol.
Martin H. Schaefer, Tiago J. S. Lopes, Nancy Mah, Jason E. Shoemaker, Yukiko Matsuoka, Jean-Fred Fontaine, Caroline Louis-Jeune, Amie J. Eisfeld, Gabriele Neumann, Carol Perez-Iratxeta, Yoshihiro Kawaoka, Hiroaki Kitano, Miguel A. Andrade-Navarro
2012 J jnl
Integrated network analysis reveals a novel role for the cell cycle in 2009 pandemic influenza virus-induced inflammation in macaque lungs.
BMC Syst. Biol.
Jason E. Shoemaker, Satoshi Fukuyama, Amie J. Eisfeld, Yukiko Muramoto, Shinji Watanabe, Tokiko Watanabe, Yukiko Matsuoka, Hiroaki Kitano, Yoshihiro Kawaoka
2011 J jnl
Tissue-specific subnetworks and characteristics of publicly available human protein interaction databases.
Bioinform.
Tiago J. S. Lopes, Martin H. Schaefer, Jason E. Shoemaker, Yukiko Matsuoka, Jean-Fred Fontaine, Gabriele Neumann, Miguel A. Andrade-Navarro, Yoshihiro Kawaoka, Hiroaki Kitano
2010 J jnl
Confidence from uncertainty - A multi-target drug screening method from robust control theory.
BMC Syst. Biol.
Camilla Luni, Jason E. Shoemaker, Kevin R. Sanft, Linda R. Petzold, Francis J. Doyle III
2010 J jnl
Fathead minnow steroidogenesis: in silico analyses reveals tradeoffs between nominal target efficacy and robustness to cross-talk.
BMC Syst. Biol.
Jason E. Shoemaker, Kalyan Gayen, Natàlia Garcia-Reyero, Edward J. Perkins, Daniel L. Villeneuve, Li Liu, Francis J. Doyle
2009 — ch.
Automatic Control in Systems Biology.
Handbook of Automation
Henry Mirsky, Jörg Stelling, Rudiyanto Gunawan, Neda Bagheri, Stephanie R. Taylor, Eric Kwei, Jason E. Shoemaker, Francis J. Doyle III