Jason E. McDermott

34 papers C 2Misc 4Journal 23Unranked 5
YearRankTypeTitle / Venue / Authors
2021 J jnl
Hypergraph models of biological networks to identify genes critical to pathogenic viral response.
BMC Bioinform.
Song Feng, Emily Heath, Brett A. Jefferson, Cliff A. Joslyn, Henry Kvinge, Hugh D. Mitchell, Brenda Praggastis, Amie J. Eisfeld, Amy C. Sims, Larissa B. Thackray, Shufang Fan, Kevin B. Walters, Peter J. Halfmann, Danielle Westhoff-Smith, Qing Tan, Vineet D. Menachery, Timothy P. Sheahan, Adam S. Cockrell, Jacob F. Kocher, Kelly G. Stratton, Natalie C. Heller, Lisa M. Bramer, Michael S. Diamond, Ralph S. Baric, Katrina M. Waters, Yoshihiro Kawaoka, Jason E. McDermott, Emilie Purvine
2020 J jnl
Ten Simple Rules to becoming a principal investigator.
PLoS Comput. Biol.
John S. Tregoning, Jason E. McDermott
2019 C conf
Fast and Scalable Implementations of Influence Maximization Algorithms.
CLUSTER
Marco Minutoli, Mahantesh Halappanavar, Ananth Kalyanaraman, Arun V. Sathanur, Ryan S. McClure, Jason E. McDermott
2019 J jnl
Unified feature association networks through integration of transcriptomic and proteomic data.
PLoS Comput. Biol.
Ryan S. McClure, Jason P. Wendler, Joshua N. Adkins, Jesica Swanstrom, Ralph S. Baric, Brooke L. Deatherage Kaiser, Kristie L. Oxford, Katrina M. Waters, Jason E. McDermott
2018 J jnl
Ten simple rules for drawing scientific comics.
PLoS Comput. Biol.
Jason E. McDermott, Matthew Partridge, Yana Bromberg
2016 J jnl
The effect of inhibition of PP1 and TNFα signaling on pathogenesis of SARS coronavirus.
BMC Syst. Biol.
Jason E. McDermott, Hugh D. Mitchell, Lisa E. Gralinski, Amie J. Eisfeld, Laurence Josset, Armand Bankhead III, Gabriele Neumann, Susan C. Tilton, Alexandra Schäfer, Chengjun Li, Shufang Fan, Shannon K. McWeeney, Ralph S. Baric, Michael G. Katze, Katrina M. Waters
2015 J jnl
Prediction of multi-drug resistance transporters using a novel sequence analysis method.
F1000Research
Jason E. McDermott, Paul J. Bruillard, Christopher C. Overall, Luke J. Gosink, Stephen R. Lindemann
2014 — conf
Promises and challenges in analysis of biological big data.
BCB
Jason E. McDermott
2013 J jnl
Reproducibility: Two more red flags for suspect work.
Nat.
Jason E. McDermott
2013 — conf
Trelliscope: A system for detailed visualization in the deep analysis of large complex data.
LDAV
Ryan Hafen, Luke J. Gosink, Jason E. McDermott, Karin Rodland, Kerstin Kleese van Dam, William S. Cleveland
2012 J jnl
An Adaptive Coarse Graining Method for Signal Transduction in Three Dimensions.
Fundam. Informaticae
Michelle Archuleta, Jason E. McDermott, Jeremy S. Edwards, Haluk Resat
2012 J jnl
Modeling Dynamic Regulatory Processes in Stroke.
PLoS Comput. Biol.
Jason E. McDermott, Kenneth D. Jarman, Ronald C. Taylor, Mary J. Lancaster, Harish Shankaran, Keri B. Vartanian, Susan L. Stevens, Mary P. Stenzel-Poore, Antonio Sanfilippo
2012 — conf
Modeling Emergence in Neuroprotective Regulatory Networks.
Complex
Antonio Sanfilippo, Jereme N. Haack, Jason E. McDermott, Susan L. Stevens, Mary P. Stenzel-Poore
2012 Misc conf
Session introduction.
Pacific Symposium on Biocomputing
Jason E. McDermott, Pascal Braun, Richard Bonneau, Daniel R. Hyduke
2012 J jnl
Suppressed Expression of T-Box Transcription Factors Is Involved in Senescence in Chronic Obstructive Pulmonary Disease.
PLoS Comput. Biol.
George K. Acquaah-Mensah, Deepti Malhotra, Madhulika Vulimiri, Jason E. McDermott, Shyam Biswal
2012 J jnl
Topological analysis of protein co-abundance networks identifies novel host targets important for HCV infection and pathogenesis.
BMC Syst. Biol.
Jason E. McDermott, Deborah L. Diamond, Courtney D. Corley, Angela L. Rasmussen, Michael G. Katze, Katrina M. Waters
2011 J jnl
Conserved host response to highly pathogenic avian influenza virus infection in human cell culture, mouse and macaque model systems.
BMC Syst. Biol.
Jason E. McDermott, Harish Shankaran, Amie J. Eisfeld, Sarah E. Belisle, Gabriele Neumann, Chengjun Li, Shannon K. McWeeney, Carol Sabourin, Yoshihiro Kawaoka, Michael G. Katze, Katrina M. Waters
2011 Misc conf
Defining the Players in Higher-Order Networks: Predictive Modeling for Reverse Engineering Functional Influence Networks.
Pacific Symposium on Biocomputing
Jason E. McDermott, Michelle Archuleta, Susan L. Stevens, Mary P. Stenzel-Poore, Antonio Sanfilippo
2011 J jnl
Enriching regulatory networks by bootstrap learning using optimised GO-based gene similarity and gene links mined from PubMed abstracts.
Int. J. Comput. Biol. Drug Des.
Ronald C. Taylor, Antonio Sanfilippo, Jason E. McDermott, Bob Baddeley, Roderick M. Riensche, Russ Jensen, Marc Verhagen, James Pustejovsky
2011 J jnl
Systems analysis of multiple regulator perturbations allows discovery of virulence factors in Salmonella.
BMC Syst. Biol.
Hyunjin Yoon, Charles Ansong, Jason E. McDermott, Marina A. Gritsenko, Richard D. Smith, Fred Heffron, Joshua N. Adkins
2010 — conf
An integrated approach to predictive genomic analytics.
BCB
Jason E. McDermott, Bob Baddeley, Susan L. Stevens, Antonio Sanfilippo, Rick Riensche, Mary P. Stenzel-Poore, Ronald C. Taylor, Russ Jensen
2010 J jnl
Evolutionary Transients in the Rice Transcriptome.
Genom. Proteom. Bioinform.
Jun Wang, Jianguo Zhang, Ruiqiang Li, Hongkun Zheng, Jun Li, Yong Zhang, Heng Li, Peixiang Ni, Songgang Li, Shengting Li, Jingqiang Wang, Dongyuan Liu, Jason E. McDermott, Ram Samudrala, Siqi Liu, Jian Wang, Huanming Yang, Jun Yu, Gane Ka-Shu Wong
2010 — conf
Learning biological networks via bootstrapping with optimized go-based gene similarity.
BCB
Ronald C. Taylor, Bob Baddeley, Antonio Sanfilippo, Rick Riensche, Marc Verhagen, Jason E. McDermott, Russ Jensen
2009 Misc conf
A Bayesian Integration Model of High-Throughput Proteomics and Metabolomics Data for Improved Early Detection of Microbial Infections.
Pacific Symposium on Biocomputing
Bobbie-Jo M. Webb-Robertson, Lee Ann McCue, Nathaniel Beagley, Jason E. McDermott, David S. Wunschel, Susan M. Varnum, Jian Zhi Hu, Nancy G. Isern, Garry W. Buchko, Kathleen McAteer, Joel G. Pounds
2009 J jnl
An analysis pipeline for the inference of protein-protein interaction networks.
Int. J. Data Min. Bioinform.
Ronald C. Taylor, Mudita Singhal, Don Simone Daly, Jason M. Gilmore, William R. Cannon, Kelly Domico, Amanda M. White, Deanna L. Auberry, Kenneth J. Auberry, Brian Hooker, Gregory B. Hurst, Jason E. McDermott, W. Hayes McDonald, Dale Pelletier, Denise Schmoyer, H. Steven Wiley
2009 J jnl
Bottlenecks and Hubs in Inferred Networks Are Important for Virulence in
J. Comput. Biol.
Jason E. McDermott, Ronald C. Taylor, Hyunjin Yoon, Fred Heffron
2009 Misc conf
Investigating political and demographic factors in crowd based interfaces.
OZCHI
Tom Barker, Matthias Hank Haeusler, Frank Maguire, Jason E. McDermott
2009 J jnl
Using the gene ontology to enrich biological pathways.
Int. J. Comput. Biol. Drug Des.
Antonio Sanfilippo, Bob Baddeley, Nathaniel Beagley, Jason E. McDermott, Roderick M. Riensche, Ronald C. Taylor, Banu Gopalan
2007 C conf
SEBINI-CABIN: An Analysis Pipeline for Biological Network Inference, with a Case Study in Protein-Protein Interaction Network Reconstruction.
ICMLA
Ronald C. Taylor, Mudita Singhal, Don Simone Daly, Kelly Domico, Amanda M. White, Deanna L. Auberry, Kenneth J. Auberry, Brian Hooker, Gregory B. Hurst, Jason E. McDermott, W. Hayes McDonald, Dale Pelletier, Denise Schmoyer, William R. Cannon
2006 J jnl
INTEGRATOR: interactive graphical search of large protein interactomes over the Web.
BMC Bioinform.
Aaron N. Chang, Jason E. McDermott, Zachary Frazier, Michal Guerquin, Ram Samudrala
2005 J jnl
An enhanced Java graph applet interface for visualizing interactomes.
Bioinform.
Aaron N. Chang, Jason E. McDermott, Ram Samudrala
2005 J jnl
BIOVERSE: enhancements to the framework for structural, functional and contextual modeling of proteins and proteomes.
Nucleic Acids Res.
Jason E. McDermott, Michal Guerquin, Zachary Frazier, Aaron N. Chang, Ram Samudrala
2005 J jnl
Functional annotation from predicted protein interaction networks.
Bioinform.
Jason E. McDermott, Roger Eugene Bumgarner, Ram Samudrala
2003 J jnl
Bioverse: functional, structural and contextual annotation of proteins and proteomes.
Nucleic Acids Res.
Jason E. McDermott, Ram Samudrala