Jaroslaw Zola - RankMe

62 papers A 6B 6C 1Misc 6Journal 26Unranked 13

Year	Rank	Type	Title / Venue / Authors
2025	J	`jnl`	Disambiguating a Soft Metagenomic Clustering. J. Comput. Biol. Rahul Nihalani, Jaroslaw Zola, Srinivas Aluru
2025	J	`jnl`	Fast Counting and Utilizing Induced 6-Cycles in Bipartite Networks. IEEE Trans. Knowl. Data Eng. Jason Niu, Jaroslaw Zola, Ahmet Erdem Sariyüce
2025	J	`jnl`	SKiM: accurately classifying metagenomic ONT reads in limited memory. Bioinform. Trevor Schneggenburger, Jaroslaw Zola
2024	J	`jnl`	End-to-End Bayesian Networks Exact Learning in Shared Memory. IEEE Trans. Parallel Distributed Syst. Subhadeep Karan, Zainul Abideen Sayed, Jaroslaw Zola
2024	B	`conf`	Resource Efficient Bayesian Optimization. CLOUD Namit Juneja, Varun Chandola, Jaroslaw Zola, Olga Wodo, Parth Desai
2024	B	`conf`	Towards Sustainable Cloud Software Systems through Energy-Aware Code Smell Refactoring. CLOUD Asif Imran, Tevfik Kosar, Jaroslaw Zola, Muhammed Fatih Bulut
2023	J	`jnl`	Coriolis: enabling metagenomic classification on lightweight mobile devices. Bioinform. Andrew J. Mikalsen, Jaroslaw Zola
2023	J	`jnl`	Identifying Taxonomic Units in Metagenomic DNA Streams on Mobile Devices. IEEE ACM Trans. Comput. Biol. Bioinform. Vicky Zheng, Ahmet Erdem Sariyüce, Jaroslaw Zola
2023	—	`conf`	Parallel Auto-Scheduling of Counting Queries in Machine Learning Applications on HPC Systems. Euro-Par Workshops Pawel Bratek, Lukasz Szustak, Jaroslaw Zola
2023	J	`jnl`	Predicting the Impact of Batch Refactoring Code Smells on Application Resource Consumption. CoRR Asif Imran, Tevfik Kosar, Jaroslaw Zola, Muhammed Fatih Bulut
2023	Misc	`conf`	SCoOL - Scalable Common Optimization Library. HiPC Zainul Abideen Sayed, Jaroslaw Zola
2022	B	`conf`	Counting Induced 6-Cycles in Bipartite Graphs. ICPP Jason Niu, Jaroslaw Zola, Ahmet Erdem Sariyüce
2022	J	`jnl`	GraSPI: Extensible software for the graph-based quantification of morphology in organic electronics. SoftwareX Devyani Jivani, Jaroslaw Zola, Baskar Ganapathysubramanian, Olga Wodo
2022	A	`conf`	GreenABR: energy-aware adaptive bitrate streaming with deep reinforcement learning. MMSys Bekir Oguzhan Turkkan, Ting Dai, Adithya Raman, Tevfik Kosar, Changyou Chen, Muhammed Fatih Bulut, Jaroslaw Zola, Daby Sow
2021	B	`conf`	Graph-based Strategy for Establishing Morphology Similarity. SSDBM Namit Juneja, Jaroslaw Zola, Varun Chandola, Olga Wodo
2021	J	`jnl`	Longitudinal K-means approaches to clustering and analyzing EHR opioid use trajectories for clinical subtypes. J. Biomed. Informatics Sarah Mullin, Jaroslaw Zola, Robert Lee, Jinwei Hu, Brianne Mackenzie, Arlen Brickman, Gabriel Anaya, Shyamashree Sinha, Angie Li, Peter L. Elkin
2021	—	`conf`	Parallelization and Auto-scheduling of Data Access Queries in ML Workloads. Euro-Par Workshops Pawel Bratek, Lukasz Szustak, Jaroslaw Zola
2020	C	`conf`	Efficient Execution of Dynamic Programming Algorithms on Apache Spark. CLUSTER Mohammad Mahdi Javanmard, Zafar Ahmad, Jaroslaw Zola, Louis-Noël Pouchet, Rezaul Chowdhury, Robert J. Harrison
2020	J	`jnl`	Learning Manifolds from Dynamic Process Data. Algorithms Frank Schoeneman, Varun Chandola, Nils Napp, Olga Wodo, Jaroslaw Zola
2019	J	`jnl`	Performance of All-Pairs Shortest-Paths Solvers with Apache Spark. CoRR Frank Schoeneman, Jaroslaw Zola
2019	B	`conf`	Solving All-Pairs Shortest-Paths Problem in Large Graphs Using Apache Spark. ICPP Frank Schoeneman, Jaroslaw Zola
2018	Misc	`conf`	Applications and Challenges of Real-time Mobile DNA Analysis. HotMobile Steven Y. Ko, Lauren Sassoubre, Jaroslaw Zola
2018	—	`conf`	Entropy-Isomap: Manifold Learning for High-dimensional Dynamic Processes. IEEE BigData Frank Schoeneman, Varun Chandola, Nils Napp, Olga Wodo, Jaroslaw Zola
2018	J	`jnl`	Entropy-Isomap: Manifold Learning for High-dimensional Dynamic Processes. CoRR Frank Schoeneman, Varun Chandola, Nils Napp, Olga Wodo, Jaroslaw Zola
2018	A	`conf`	Fast Counting in Machine Learning Applications. UAI Subhadeep Karan, Matthew Eichhorn, Blake Hurlburt, Grant Iraci, Jaroslaw Zola
2018	J	`jnl`	Fast Counting in Machine Learning Applications. CoRR Subhadeep Karan, Matthew Eichhorn, Blake Hurlburt, Grant Iraci, Jaroslaw Zola
2018	J	`jnl`	Privacy Preserving Analytics on Distributed Medical Data. CoRR Marina Blanton, Ah Reum Kang, Subhadeep Karan, Jaroslaw Zola
2018	—	`conf`	Scalable Manifold Learning for Big Data with Apache Spark. IEEE BigData Frank Schoeneman, Jaroslaw Zola
2018	J	`jnl`	Scalable Manifold Learning for Big Data with Apache Spark. CoRR Frank Schoeneman, Jaroslaw Zola
2017	J	`jnl`	Applications and Challenges of Real-time Mobile DNA Analysis. CoRR Steven Y. Ko, Lauren Sassoubre, Jaroslaw Zola
2017	A	`conf`	Error Metrics for Learning Reliable Manifolds from Streaming Data. SDM Frank Schoeneman, Suchismit Mahapatra, Varun Chandola, Nils Napp, Jaroslaw Zola
2017	Misc	`conf`	Scalable Exact Parent Sets Identification in Bayesian Networks Learning with Apache Spark. HiPC Subhadeep Karan, Jaroslaw Zola
2017	J	`jnl`	Scalable Exact Parent Sets Identification in Bayesian Networks Learning with Apache Spark. CoRR Subhadeep Karan, Jaroslaw Zola
2016	J	`jnl`	Exact Structure Learning of Bayesian Networks by Optimal Path Extension. CoRR Subhadeep Karan, Jaroslaw Zola
2016	—	`conf`	Exact structure learning of Bayesian networks by optimal path extension. IEEE BigData Subhadeep Karan, Jaroslaw Zola
2016	—	`conf`	HiCOMB Introduction and Committees. IPDPS Workshops Srinivas Aluru, David A. Bader, Ananth Kalyanaraman, Jaroslaw Zola
2015	J	`jnl`	Parallel Framework for Dimensionality Reduction of Large-Scale Datasets. Sci. Program. Sai Kiranmayee Samudrala, Jaroslaw Zola, Srinivas Aluru, Baskar Ganapathysubramanian
2014	—	`conf`	Constructing Similarity Graphs from Large-Scale Biological Sequence Collections. IPDPS Workshops Jaroslaw Zola
2014	J	`jnl`	Federated Computing for the Masses-Aggregating Resources to Tackle Large-Scale Engineering Problems. Comput. Sci. Eng. Javier Diaz Montes, Yu Xie, Ivan Rodero, Jaroslaw Zola, Baskar Ganapathysubramanian, Manish Parashar
2014	—	`ch.`	Parallel Computing for Gene Networks Reverse Engineering. Approaches in Integrative Bioinformatics Jaroslaw Zola
2013	—	`conf`	BigLS - The 1 ICCABS Ananth Kalyanaraman, Jaroslaw Zola
2013	—	`conf`	HiCOMB Introduction. IPDPS Workshops Jaroslaw Zola, David A. Bader, Srinivas Aluru
2013	J	`jnl`	Large-Scale metagenomic sequence Clustering on Map-Reduce Clusters. J. Bioinform. Comput. Biol. Xiao Yang, Jaroslaw Zola, Srinivas Aluru
2013	J	`jnl`	Parallel globally optimal structure learning of Bayesian networks. J. Parallel Distributed Comput. Olga Nikolova, Jaroslaw Zola, Srinivas Aluru
2011	J	`jnl`	Accelerating Pairwise Computations on Cell Processors. IEEE Trans. Parallel Distributed Syst. Abhinav Sarje, Jaroslaw Zola, Srinivas Aluru
2011	A	`conf`	Parallel Metagenomic Sequence Clustering Via Sketching and Maximal Quasi-clique Enumeration on Map-Reduce Clouds. IPDPS Xiao Yang, Jaroslaw Zola, Srinivas Aluru
2011	—	`ch.`	Systems Biology, Network Inference in. Encyclopedia of Parallel Computing Jaroslaw Zola, Srinivas Aluru
2010	—	`ch.`	Pairwise Computations on the Cell Processor. Scientific Computing with Multicore and Accelerators Abhinav Sarje, Jaroslaw Zola, Srinivas Aluru
2010	J	`jnl`	Parallel Information-Theory-Based Construction of Genome-Wide Gene Regulatory Networks. IEEE Trans. Parallel Distributed Syst. Jaroslaw Zola, Maneesha Aluru, Abhinav Sarje, Srinivas Aluru
2009	Misc	`conf`	A parallel algorithm for exact Bayesian network inference. HiPC Olga Nikolova, Jaroslaw Zola, Srinivas Aluru
2009	B	`conf`	Constructing Gene Regulatory Networks on Clusters of Cell Processors. ICPP Jaroslaw Zola, Abhinav Sarje, Srinivas Aluru
2008	J	`jnl`	Large-scale phylogenetic analysis on current HPC architectures. Sci. Program. Michael Ott, Jaroslaw Zola, Srinivas Aluru, Andrew D. Johnson, Daniel Janies, Alexandros Stamatakis
2008	Misc	`conf`	Parallel Information Theory Based Construction of Gene Regulatory Networks. HiPC Jaroslaw Zola, Maneesha Aluru, Srinivas Aluru
2007	A	`conf`	Large-scale maximum likelihood-based phylogenetic analysis on the IBM BlueGene/L. SC Michael Ott, Jaroslaw Zola, Alexandros Stamatakis, Srinivas Aluru
2007	—	`ch.`	Multiple Sequence Alignment and Phylogenetic Inference. Grid Computing for Bioinformatics and Computational Biology Denis Trystram, Jaroslaw Zola
2007	—	`conf`	PARALLEL-TCOFFEE: A parallel multiple sequence aligner. PDCS Jaroslaw Zola, Xiao Yang, Adrian Rospondek, Srinivas Aluru
2006	J	`jnl`	Large scale multiple sequence alignment with simultaneous phylogeny inference. J. Parallel Distributed Comput. Gilles Parmentier, Denis Trystram, Jaroslaw Zola
2006	A	`conf`	Parallel multiple sequence alignment with local phylogeny search by simulated annealing. IPDPS Jaroslaw Zola, Denis Trystram, Andrei Tchernykh, Carlos A. Brizuela
2005	—	`conf`	Parallel Multiple Sequence Alignment with Decentralized Cache Support. Euro-Par Denis Trystram, Jaroslaw Zola
2004	—	`conf`	CaLi, Efficient Library for Cache Implementation. ENC Jaroslaw Zola
2004	—	`conf`	Cache-Based Parallelization of Multiple Sequence Alignment Problem. Euro-Par Gilles Parmentier, Denis Trystram, Jaroslaw Zola
2001	Misc	`conf`	EPL-Julia the High-Performance Library for Evolutionary Computations. PPAM Jaroslaw Zola, Roman Wyrzykowski