Jarno N. Alanko

21 papers A 1B 4C 2Journal 10Unranked 4
YearRankTypeTitle / Venue / Authors
2026 J jnl
Response to: "best practices when benchmarking CATCH for the design of genome enrichment probes".
Bioinform.
Jarno N. Alanko, Ilya B. Slizovskiy, Daniel Lokshtanov, Travis Gagie, Noelle R. Noyes, Christina Boucher
2025 A conf
Batched k-Mer Lookup on the Spectral Burrows-Wheeler Transform.
ALENEX
Jarno N. Alanko, Elena Biagi, Joel Mackenzie, Simon J. Puglisi
2025 — conf
Compact Data Structures for Collections of Sets.
From Strings to Graphs, and Back Again
Jarno N. Alanko, Philip Bille, Inge Li Gørtz, Gonzalo Navarro, Simon J. Puglisi
2025 J jnl
Computing k-mers in Graphs.
CoRR
Jarno N. Alanko, Máximo Pérez López
2025 J jnl
Finimizers: Variable-Length Bounded-Frequency Minimizers for $k$-mer Sets.
IEEE Trans. Comput. Biol. Bioinform.
Jarno N. Alanko, Elena Biagi, Simon J. Puglisi
2025 — conf
Graph Indexing Beyond Wheeler Graphs.
The Expanding World of Compressed Data
Jarno N. Alanko, Elena Biagi, Massimo Equi, Veli Mäkinen, Simon J. Puglisi, Nicola Rizzo, Kunihiko Sadakane, Jouni Sirén
2025 B conf
The Trie Measure, Revisited.
CPM
Jarno N. Alanko, Ruben Becker, Davide Cenzato, Travis Gagie, Sung-Hwan Kim, Bojana Kodric, Nicola Prezza
2025 J jnl
The Trie Measure, Revisited.
CoRR
Jarno N. Alanko, Ruben Becker, Davide Cenzato, Travis Gagie, Sung-Hwan Kim, Bojana Kodric, Nicola Prezza
2024 J jnl
An Experimental Performance Assessment of Galileo OSNMA.
Sensors
Toni Hammarberg, José M. Vallet Garcia, Jarno N. Alanko, Mohammad Zahidul H. Bhuiyan
2024 B conf
Computing the LCP Array of a Labeled Graph.
CPM
Jarno N. Alanko, Davide Cenzato, Nicola Cotumaccio, Sung-Hwan Kim, Giovanni Manzini, Nicola Prezza
2024 J jnl
Scalable
Bioinform.
Mohammadali Serajian, Simone Marini, Jarno N. Alanko, Noelle R. Noyes, Mattia Prosperi, Christina Boucher
2023 — conf
An Experimental Performance Assessment of Galileo OSNMA.
ICL-GNSS
Toni Hammarberg, José M. Vallet Garcia, Jarno N. Alanko, Mohammad Zahidul H. Bhuiyan
2023 J jnl
Eulertigs: minimum plain text representation of k-mer sets without repetitions in linear time.
Algorithms Mol. Biol.
Sebastian S. Schmidt, Jarno N. Alanko
2023 C conf
Longest Common Prefix Arrays for Succinct k-Spectra.
SPIRE
Jarno N. Alanko, Elena Biagi, Simon J. Puglisi
2023 J jnl
Longest Common Prefix Arrays for Succinct k-Spectra.
CoRR
Jarno N. Alanko, Elena Biagi, Simon J. Puglisi
2023 — conf
Small Searchable
ACDA
Jarno N. Alanko, Simon J. Puglisi, Jaakko Vuohtoniemi
2023 B conf
Subset Wavelet Trees.
SEA
Jarno N. Alanko, Elena Biagi, Simon J. Puglisi, Jaakko Vuohtoniemi
2023 J jnl
Themisto: a scalable colored
Bioinform.
Jarno N. Alanko, Jaakko Vuohtoniemi, Tommi Mäklin, Simon J. Puglisi
2022 C conf
Eulertigs: Minimum Plain Text Representation of k-mer Sets Without Repetitions in Linear Time.
WABI
Sebastian S. Schmidt, Jarno N. Alanko
2022 J jnl
Syotti: scalable bait design for DNA enrichment.
Bioinform.
Jarno N. Alanko, Ilya B. Slizovskiy, Daniel Lokshtanov, Travis Gagie, Noelle R. Noyes, Christina Boucher
2019 B conf
Tunneling on Wheeler Graphs.
DCC
Jarno N. Alanko, Travis Gagie, Gonzalo Navarro, Louisa Seelbach Benkner