Jari Björne

31 papers B 2C 1Journal 13Unranked 15
YearRankTypeTitle / Venue / Authors
2023 B conf
AI-Assisted Learning with ChatGPT and Large Language Models: Implications for Higher Education.
ICALT
Samuli Laato, Benedikt Morschheuser, Juho Hamari, Jari Björne
2022 J jnl
Neural Network and Random Forest Models in Protein Function Prediction.
IEEE ACM Trans. Comput. Biol. Bioinform.
Kai Hakala, Suwisa Kaewphan, Jari Björne, Farrokh Mehryary, Hans Moen, Martti Tolvanen, Tapio Salakoski, Filip Ginter
2022 B conf
Striving for platform independence in the e-learning landscape: a study on a flexible exercise creation system.
ICALT
Samuli Laato, Mika Murtojärvi, Antti Airola, Jari Björne
2021 J jnl
BioVerbNet: a large semantic-syntactic classification of verbs in biomedicine.
J. Biomed. Semant.
Olga Majewska, Charlotte Collins, Simon Baker, Jari Björne, Susan Windisch Brown, Anna Korhonen, Martha Palmer
2021 — conf
Towards Automated Screening of Literature on Artificial Intelligence in Nursing.
MedInfo
Hans Moen, Dari AlHuwail, Jari Björne, Lori Block, Sven Celin, Eunjoo Jeon, Karl Kreiner, James Mitchell, Gabriela Ozegovic, Charlene Esteban Ronquillo, Lydia Sequeira, Jude L. Tayaben, Maxim Topaz, Sai Pavan Kumar Veeranki, Laura-Maria Peltonen
2020 C conf
Propagating AI Knowledge Across University Disciplines- The Design of A Multidisciplinary AI Study Module.
FIE
Samuli Laato, Henna Vilppu, Juho Heimonen, Antti Hakkala, Jari Björne, Ali Farooq, Tapio Salakoski, Antti Airola
2018 — conf
Biomedical Event Extraction Using Convolutional Neural Networks and Dependency Parsing.
BioNLP
Jari Björne, Tapio Salakoski
2018 J jnl
Potent pairing: ensemble of long short-term memory networks and support vector machine for chemical-protein relation extraction.
Database J. Biol. Databases Curation
Farrokh Mehryary, Jari Björne, Tapio Salakoski, Filip Ginter
2018 — conf
The 2018 Shared Task on Extrinsic Parser Evaluation: On the Downstream Utility of English Universal Dependency Parsers.
CoNLL Shared Task (2)
Murhaf Fares, Stephan Oepen, Lilja Øvrelid, Jari Björne, Richard Johansson
2017 — conf
End-to-End System for Bacteria Habitat Extraction.
BioNLP
Farrokh Mehryary, Kai Hakala, Suwisa Kaewphan, Jari Björne, Tapio Salakoski, Filip Ginter
2016 — conf
Deep Learning with Minimal Training Data: TurkuNLP Entry in the BioNLP Shared Task 2016.
BioNLP (Shared Task)
Farrokh Mehryary, Jari Björne, Sampo Pyysalo, Tapio Salakoski, Filip Ginter
2016 — conf
UTU at SemEval-2016 Task 10: Binary Classification for Expression Detection (BCED).
SemEval@NAACL-HLT
Jari Björne, Tapio Salakoski
2015 J jnl
TEES 2.2: Biomedical Event Extraction for Diverse Corpora.
BMC Bioinform.
Jari Björne, Tapio Salakoski
2013 — conf
TEES 2.1: Automated Annotation Scheme Learning in the BioNLP 2013 Shared Task.
BioNLP@ACL (Shared Task)
Jari Björne, Tapio Salakoski
2013 — conf
UTurku: Drug Named Entity Recognition and Drug-Drug Interaction Extraction Using SVM Classification and Domain Knowledge.
SemEval@NAACL-HLT
Jari Björne, Suwisa Kaewphan, Tapio Salakoski
2012 — conf
PubMed-Scale Event Extraction for Post-Translational Modifications, Epigenetics and Protein Structural Relations.
BioNLP@HLT-NAACL
Jari Björne, Sofie Van Landeghem, Sampo Pyysalo, Tomoko Ohta, Filip Ginter, Yves Van de Peer, Sophia Ananiadou, Tapio Salakoski
2012 J jnl
Semantically linking molecular entities in literature through entity relationships.
BMC Bioinform.
Sofie Van Landeghem, Jari Björne, Thomas Abeel, Bernard De Baets, Tapio Salakoski, Yves Van de Peer
2012 J jnl
University of Turku in the BioNLP'11 Shared Task.
BMC Bioinform.
Jari Björne, Filip Ginter, Tapio Salakoski
2011 J jnl
Extracting Contextualized Complex Biological Events with Rich Graph-Based Feature Sets.
Comput. Intell.
Jari Björne, Juho Heimonen, Filip Ginter, Antti Airola, Tapio Pahikkala, Tapio Salakoski
2011 — conf
Generalizing Biomedical Event Extraction.
BioNLP@ACL (Shared Task)
Jari Björne, Tapio Salakoski
2011 J jnl
U-Compare bio-event meta-service: compatible BioNLP event extraction services.
BMC Bioinform.
Yoshinobu Kano, Jari Björne, Filip Ginter, Tapio Salakoski, Ekaterina Buyko, Udo Hahn, K. Bretonnel Cohen, Karin Verspoor, Christophe Roeder, Lawrence E. Hunter, Halil Kilicoglu, Sabine Bergler, Sofie Van Landeghem, Thomas Van Parys, Yves Van de Peer, Makoto Miwa, Sophia Ananiadou, Mariana L. Neves, Alberto D. Pascual-Montano, Arzucan Özgür, Dragomir R. Radev, Sebastian Riedel, Rune Sætre, Hong-Woo Chun, Jin-Dong Kim, Sampo Pyysalo, Tomoko Ohta, Jun'ichi Tsujii
2010 J jnl
Complex event extraction at PubMed scale.
Bioinform.
Jari Björne, Filip Ginter, Sampo Pyysalo, Jun'ichi Tsujii, Tapio Salakoski
2010 J jnl
Event extraction on PubMed scale.
BMC Bioinform.
Filip Ginter, Jari Björne, Sampo Pyysalo
2010 — conf
Reconstruction of Semantic Relationships from Their Projections in Biomolecular Domain.
BioNLP@ACL
Juho Heimonen, Jari Björne, Tapio Salakoski
2010 — conf
Scaling up Biomedical Event Extraction to the Entire PubMed.
BioNLP@ACL
Jari Björne, Filip Ginter, Sampo Pyysalo, Jun'ichi Tsujii, Tapio Salakoski
2009 — conf
Extracting Complex Biological Events with Rich Graph-Based Feature Sets.
BioNLP@HLT-NAACL (Shared Task)
Jari Björne, Juho Heimonen, Filip Ginter, Antti Airola, Tapio Pahikkala, Tapio Salakoski
2009 — conf
Learning to Extract Biological Event and Relation Graphs.
NODALIDA
Jari Björne, Filip Ginter, Juho Heimonen, Sampo Pyysalo, Tapio Salakoski
2008 — conf
A Graph Kernel for Protein-Protein Interaction Extraction.
BioNLP
Antti Airola, Sampo Pyysalo, Jari Björne, Tapio Pahikkala, Filip Ginter, Tapio Salakoski
2008 J jnl
All-paths graph kernel for protein-protein interaction extraction with evaluation of cross-corpus learning.
BMC Bioinform.
Antti Airola, Sampo Pyysalo, Jari Björne, Tapio Pahikkala, Filip Ginter, Tapio Salakoski
2008 J jnl
Comparative analysis of five protein-protein interaction corpora.
BMC Bioinform.
Sampo Pyysalo, Antti Airola, Juho Heimonen, Jari Björne, Filip Ginter, Tapio Salakoski
2007 J jnl
BioInfer: a corpus for information extraction in the biomedical domain.
BMC Bioinform.
Sampo Pyysalo, Filip Ginter, Juho Heimonen, Jari Björne, Jorma Boberg, Jouni Järvinen, Tapio Salakoski