Jarek Nieplocha

84 papers A 28B 2C 7Misc 3Journal 23Unranked 20

Year	Rank	Type	Title / Venue / Authors
2011	—	`ch.`	Global Arrays Parallel Programming Toolkit. Encyclopedia of Parallel Computing Jarek Nieplocha, Manojkumar Krishnan, Bruce J. Palmer, Vinod Tipparaju, Robert J. Harrison, Daniel G. Chavarría-Miranda
2010	J	`jnl`	Implementation and evaluation of active storage in modern parallel file systems. Parallel Comput. Juan Piernas Cánovas, Jarek Nieplocha
2010	J	`jnl`	NWChem: A comprehensive and scalable open-source solution for large scale molecular simulations. Comput. Phys. Commun. Marat Valiev, Eric J. Bylaska, Niranjan Govind, Karol Kowalski, Tjerk P. Straatsma, Hubertus Johannes Jacobus Van Dam, D. Wang, Jarek Nieplocha, Edoardo Aprà, Theresa L. Windus, Wibe A. de Jong
2009	J	`jnl`	Design and implementation of a high-performance CCA event service. Concurr. Comput. Pract. Exp. Ian Gorton, Daniel G. Chavarría-Miranda, Jarek Nieplocha
2009	—	`conf`	Scalable transparent checkpoint-restart of global address space applications on virtual machines over infiniband. Conf. Computing Frontiers Oreste Villa, Sriram Krishnamoorthy, Jarek Nieplocha, David M. Brown Jr.
2009	A	`conf`	Scalable work stealing. SC James Dinan, D. Brian Larkins, P. Sadayappan, Sriram Krishnamoorthy, Jarek Nieplocha
2008	J	`jnl`	A framework for characterizing overlap of communication and computation in parallel applications. Clust. Comput. Aniruddha G. Shet, P. Sadayappan, David E. Bernholdt, Jarek Nieplocha, Vinod Tipparaju
2008	A	`conf`	Early experience with out-of-core applications on the Cray XMT. IPDPS Daniel G. Chavarría-Miranda, Andrés Márquez, Jarek Nieplocha, Kristyn J. Maschhoff, Chad Scherrer
2008	—	`conf`	Efficient Management of Complex Striped Files in Active Storage. Euro-Par Juan Piernas, Jarek Nieplocha
2008	—	`conf`	Evaluation of Remote Memory Access Communication on the IBM Blue Gene/P Supercomputer. ICPP Workshops Manojkumar Krishnan, Jarek Nieplocha, Michael Blocksome, Brian E. Smith
2008	—	`conf`	Integrated Data and Task Management for Scientific Applications. ICCS (1) Jarek Nieplocha, Sriram Krishnamoorthy, Marat Valiev, Manojkumar Krishnan, Bruce J. Palmer, P. Sadayappan
2008	B	`conf`	Scioto: A Framework for Global-View Task Parallelism. ICPP James Dinan, Sriram Krishnamoorthy, D. Brian Larkins, Jarek Nieplocha, P. Sadayappan
2007	A	`conf`	A global address space framework for locality aware scheduling of block-sparse computations. IPDPS Sriram Krishnamoorthy, Ümit V. Çatalyürek, Jarek Nieplocha, Atanas Rountev, P. Sadayappan
2007	—	`conf`	Evaluating the potential of multithreaded platforms for irregular scientific computations. Conf. Computing Frontiers Jarek Nieplocha, Andrés Márquez, John Feo, Daniel G. Chavarría-Miranda, George Chin Jr., Chad Scherrer, Nathaniel Beagley
2007	A	`conf`	Evaluation of Remote Memory Access Communication on the Cray XT3. IPDPS Vinod Tipparaju, Andriy Kot, Jarek Nieplocha, Monika ten Bruggencate, Nikos Chrisochoides
2007	A	`conf`	Evaluation of active storage strategies for the lustre parallel file system. SC Juan Piernas, Jarek Nieplocha, Evan J. Felix
2007	C	`conf`	Non-collective parallel I/O for global address space programming models. CLUSTER Sriram Krishnamoorthy, Juan Piernas, Vinod Tipparaju, Jarek Nieplocha, P. Sadayappan
2007	A	`conf`	Probability Convergence in a Multithreaded Counting Application. IPDPS Chad Scherrer, Nathaniel Beagley, Jarek Nieplocha, Andrés Márquez, John Feo, Daniel G. Chavarría-Miranda
2007	A	`conf`	Scalable Visual Analytics of Massive Textual Datasets. IPDPS Manojkumar Krishnan, S. Bohn, W. Cowley, Vernon L. Crow, Jarek Nieplocha
2007	—	`conf`	Towards Fault Resilient Global Arrays. PARCO Vinod Tipparaju, Manojkumar Krishnan, Bruce J. Palmer, Fabrizio Petrini, Jarek Nieplocha
2007	C	`conf`	Transparent system-level migration of PGAS applications using Xen on InfiniBand. CLUSTER Daniele Paolo Scarpazza, Patrick Mullaney, Oreste Villa, Fabrizio Petrini, Vinod Tipparaju, David M. L. Brown, Jarek Nieplocha
2007	J	`jnl`	Using the GA and TAO toolkits for solving large-scale optimization problems on parallel computers. ACM Trans. Math. Softw. Steven Benson, Manojkumar Krishnan, Lois C. McInnes, Jarek Nieplocha, Jason Sarich
2006	J	`jnl`	A Component Architecture for High-Performance Scientific Computing. Int. J. High Perform. Comput. Appl. David E. Bernholdt, Benjamin A. Allan, Robert C. Armstrong, Felipe Bertrand, Kenneth Chiu, Tamara Dahlgren, Kostadin Damevski, Wael R. Elwasif, Thomas Epperly, Madhusudhan Govindaraju, Daniel S. Katz, James Arthur Kohl, Manojkumar Krishnan, Gary Kumfert, Jay Walter Larson, Sophia Lefantzi, Michael J. Lewis, Allen D. Malony, Lois C. McInnes, Jarek Nieplocha, Boyana Norris, Steven G. Parker, Jaideep Ray, Sameer Shende, Theresa L. Windus, Shujia Zhou
2006	C	`conf`	A Performance Instrumentation Framework to Characterize Computation-Communication Overlap in Message-Passing Systems. CLUSTER Aniruddha G. Shet, P. Sadayappan, David E. Bernholdt, Jarek Nieplocha, Vinod Tipparaju
2006	J	`jnl`	Advances, Applications and Performance of the Global Arrays Shared Memory Programming Toolkit. Int. J. High Perform. Comput. Appl. Jarek Nieplocha, Bruce J. Palmer, Vinod Tipparaju, Manojkumar Krishnan, Harold Trease, Edoardo Aprà
2006	A	`conf`	An approach to locality-conscious load balancing and transparent memory hierarchy management with a global-address-space parallel programming model. IPDPS Sriram Krishnamoorthy, Ümit V. Çatalyürek, Jarek Nieplocha, P. Sadayappan
2006	A	`conf`	An extensible global address space framework with decoupled task and data abstractions. IPDPS Sriram Krishnamoorthy, Ümit V. Çatalyürek, Jarek Nieplocha, Atanas Rountev, P. Sadayappan
2006	A	`conf`	Blue Gene system software - Design and implementation of a one-sided communication interface for the IBM eServer Blue Gene® supercomputer. SC Michael Blocksome, Charles Archer, Todd Inglett, Patrick McCarthy, Michael B. Mundy, Joe Ratterman, A. Sidelnik, Brian E. Smith, George Almási, José G. Castaños, Derek Lieber, José E. Moreira, Sriram Krishnamoorthy, Vinod Tipparaju, Jarek Nieplocha
2006	A	`conf`	Data management and query - Hypergraph partitioning for automatic memory hierarchy management. SC Sriram Krishnamoorthy, Ümit V. Çatalyürek, Jarek Nieplocha, Atanas Rountev, P. Sadayappan
2006	J	`jnl`	High Performance Remote Memory Access Communication: The Armci Approach. Int. J. High Perform. Comput. Appl. Jarek Nieplocha, Vinod Tipparaju, Manojkumar Krishnan, Dhabaleswar K. Panda
2006	J	`jnl`	Layout transformation support for the disk resident arrays framework. J. Supercomput. Sriram Krishnamoorthy, Gerald Baumgartner, Chi-Chung Lam, Jarek Nieplocha, P. Sadayappan
2006	A	`conf`	M12 - Overview of the global arrays parallel software development toolkit. SC Jarek Nieplocha, Bruce J. Palmer, Manojkumar Krishnan, P. Sadayappan
2006	—	`conf`	Memory efficient parallel matrix multiplication operation for irregular problems. Conf. Computing Frontiers Manojkumar Krishnan, Jarek Nieplocha
2006	J	`jnl`	SFT: scalable fault tolerance. ACM SIGOPS Oper. Syst. Rev. Fabrizio Petrini, Jarek Nieplocha, Vinod Tipparaju
2006	J	`jnl`	ScalaBLAST: A Scalable Implementation of BLAST for High-Performance Data-Intensive Bioinformatics Analysis. IEEE Trans. Parallel Distributed Syst. Chris Oehmen, Jarek Nieplocha
2006	—	`conf`	Topology-aware tile mapping for clusters of SMPs. Conf. Computing Frontiers Daniel G. Chavarría-Miranda, Jarek Nieplocha, Vinod Tipparaju
2005	A	`conf`	An Evaluation of Two Implementation Strategies for Optimizing One-Sided Atomic Reduction. IPDPS Jarek Nieplocha, Vinod Tipparaju, Edoardo Aprà
2005	Misc	`conf`	Data and Computation Abstractions for Dynamic and Irregular Computations. HiPC Sriram Krishnamoorthy, Jarek Nieplocha, P. Sadayappan
2005	—	`conf`	Exploiting processor groups to extend scalability of the GA shared memory programming model. Conf. Computing Frontiers Jarek Nieplocha, Manojkumar Krishnan, Bruce J. Palmer, Vinod Tipparaju, Yeliang Zhang
2005	A	`conf`	Multilevel Parallelism in Computational Chemistry using Common Component Architecture and Global Arrays. SC Manojkumar Krishnan, Yuri Alexeev, Theresa L. Windus, Jarek Nieplocha
2005	A	`conf`	Optimizing All-to-All Collective Communication by Exploiting Concurrency in Modern Networks. SC Vinod Tipparaju, Jarek Nieplocha
2005	A	`conf`	Parallelization of the NAS Conjugate Gradient Benchmark Using the Global Arrays Shared Memory Programming Model. IPDPS Yeliang Zhang, Vinod Tipparaju, Jarek Nieplocha, Salim Hariri
2005	J	`jnl`	QsNetII: Defining High-Performance Network Design. IEEE Micro Jon Beecroft, David Addison, David Hewson, Moray McLaren, Duncan Roweth, Fabrizio Petrini, Jarek Nieplocha
2005	—	`conf`	Symmetric Data Objects and Remote Memory Access Communication for Fortran-95 Applications. Euro-Par Jarek Nieplocha, Doug Baxter, Vinod Tipparaju, Craig Edward Rasmussen, Robert W. Numrich
2004	—	`conf`	Co-array Python: A Parallel Extension to the Python Language. Euro-Par Craig Edward Rasmussen, Matthew J. Sottile, Jarek Nieplocha, Robert W. Numrich, Eric Jones
2004	J	`jnl`	Component-based integration of chemistry and optimization software. J. Comput. Chem. Joseph P. Kenny, Steven Benson, Yuri Alexeev, Jason Sarich, Curtis L. Janssen, Lois Curfman McInnes, Manojkumar Krishnan, Jarek Nieplocha, Elizabeth Jurrus, Carl Fahlstrom, Theresa L. Windus
2004	Misc	`conf`	Efficient Layout Transformation for Disk-Based Multidimensional Arrays. HiPC Sriram Krishnamoorthy, Gerald Baumgartner, Chi-Chung Lam, Jarek Nieplocha, P. Sadayappan
2004	A	`conf`	Host-Assisted Zero-Copy Remote Memory Access Communication on InfiniBand. IPDPS Vinod Tipparaju, Gopalakrishnan Santhanaraman, Jarek Nieplocha, Dhabaleswar K. Panda
2004	J	`jnl`	Optimisation and performance evaluation of mechanisms for latency tolerance in remote memory access communication on clusters. Int. J. High Perform. Comput. Netw. Jarek Nieplocha, Vinod Tipparaju, Manojkumar Krishnan, Gopalakrishnan Santhanaraman, Dhabaleswar K. Panda
2004	B	`conf`	Optimizing Parallel Multiplication Operation for Rectangular and Transposed Matrices. ICPADS Manojkumar Krishnan, Jarek Nieplocha
2004	—	`conf`	Processor-Group Aware Runtime Support for Shared- and Global-Address Space Models. ICPP Workshops Manojkumar Krishnan, Vinod Tipparaju, Bruce J. Palmer, Jarek Nieplocha
2004	A	`conf`	SRUMMA: A Matrix Multiplication Algorithm Suitable for Clusters and Scalable Shared Memory Systems. IPDPS Manojkumar Krishnan, Jarek Nieplocha
2004	C	`conf`	Toward Efficient Compilation of User-Defined Extensible Fortran Directives. HIPS Matthew Rosing, Jarek Nieplocha, Steve Yabusaki
2004	—	`conf`	What are the future trends in high-performance inter.connects for parallel computers? [Panel 1]. Hot Interconnects Fabrizio Petrini, José E. Moreira, Jarek Nieplocha, Mark K. Seager, Craig B. Stunkel, Greg Thorson, Paul Terry, Srinidhi Varadarajan
2003	A	`conf`	Efficient Collective Operations Using Remote Memory Operations on VIA-Based Clusters. IPDPS Rinku Gupta, Pavan Balaji, Dhabaleswar K. Panda, Jarek Nieplocha
2003	Misc	`conf`	Exploiting Non-blocking Remote Memory Access Communication in Scientific Benchmarks. HiPC Vinod Tipparaju, Manojkumar Krishnan, Jarek Nieplocha, Gopalakrishnan Santhanaraman, Dhabaleswar K. Panda
2003	A	`conf`	Fast Collective Operations Using Shared and Remote Memory Access Protocols on Clusters. IPDPS Vinod Tipparaju, Jarek Nieplocha, Dhabaleswar K. Panda
2003	J	`jnl`	One-Sided Communication on Clusters with Myrinet. Clust. Comput. Jarek Nieplocha, Edoardo Aprà, Jialin Ju, Vinod Tipparaju
2003	C	`conf`	Optimizing Mechanisms for Latency Tolerance in Remote Memory Access Communication on Clusters. CLUSTER Jarek Nieplocha, Vinod Tipparaju, Manojkumar Krishnan, Gopalakrishnan Santhanaraman, Dhabaleswar K. Panda
2003	A	`conf`	Optimizing Synchronization Operations for Remote Memory Communication Systems. IPDPS Darius Buntinas, Amina Saify, Dhabaleswar K. Panda, Jarek Nieplocha
2003	C	`conf`	Shared Memory Mirroring for Reducing Communication Overhead on Commodity Networks. CLUSTER Bruce J. Palmer, Jarek Nieplocha, Edoardo Aprà
2002	—	`conf`	Efficient Algorithms for Ghost Cell Updates on Two Classes of MPP Architectures. IASTED PDCS Bruce J. Palmer, Jarek Nieplocha
2002	C	`conf`	Efficient Barrier Using Remote Memory Operations on VIA-Based Clusters. CLUSTER Rinku Gupta, Vinod Tipparaju, Jarek Nieplocha, Dhabaleswar K. Panda
2002	A	`conf`	Protocols and Strategies for Optimizing Performance of Remote Memory Operations on Clusters. IPDPS Jarek Nieplocha, Vinod Tipparaju, Amina Saify, Dhabaleswar K. Panda
2001	—	`conf`	Building an Application Domain Specific Programming Framework for Computational Fluid Dynamics Calculations on Parallel Computers. PP Jarek Nieplocha, Harold Trease, Jialin Ju, D. Rector, Bruce J. Palmer
2001	A	`conf`	One-sided Communication on the Myrinet-based SMP Clusters using the GM Message-Passing Library. IPDPS Jarek Nieplocha, Jialin Ju, Edoardo Aprà
2000	—	`conf`	A Multiprotocol Communication Support for the Global Address Space Programming Model on the IBM SP. Euro-Par Jarek Nieplocha, Jialin Ju, Tjerk P. Straatsma
2000	J	`jnl`	Computational chemistry on Fujitsu vector-parallel processors: Hardware and programming environment. Parallel Comput. Ross H. Nobes, Alistair P. Rendell, Jarek Nieplocha
1999	—	`conf`	ARMCI: A Portable Remote Memory Copy Libray for Ditributed Array Libraries and Compiler Run-Time Systems. IPPS/SPDP Workshops Jarek Nieplocha, Bryan Carpenter
1999	J	`jnl`	Implementing noncollective parallel I/O in cluster environments using Active Message communication. Clust. Comput. Jarek Nieplocha, Holger Dachsel, Ian T. Foster
1998	A	`conf`	An out-of-core implementation of the COLUMBUS massively-parallel multireference configuration interaction program. SC Holger Dachsel, Jarek Nieplocha, Robert J. Harrison
1998	J	`jnl`	ChemIo: High Performance Parallel I/o for Computational Chemistry Applications. Int. J. High Perform. Comput. Appl. Jarek Nieplocha, Ian T. Foster, Ricky A. Kendall
1998	A	`conf`	Distant I/O: One-Sided Access to Secondary Storage on Remote Processors. HPDC Jarek Nieplocha, Ian T. Foster, Holger Dachsel
1998	—	`conf`	Performance and Experience with LAPI - a New High-Performance Communication Library for the IBM RS/6000 SP. IPPS/SPDP Gautam Shah, Jarek Nieplocha, Jamshed H. Mirza, Chulho Kim, Robert J. Harrison, Rama Govindaraju, Kevin J. Gildea, Paul DiNicola, Carl A. Bender
1997	J	`jnl`	A massively parallel multireference configuration interaction program: The parallel COLUMBUS program. J. Comput. Chem. Holger Dachsel, Hans Lischka, Ron L. Shepard, Jarek Nieplocha, Robert J. Harrison
1997	A	`conf`	Optimizing Collective I/O Performance on Parallel Computers: A Multisystem Study. International Conference on Supercomputing Ying Chen, Jarek Nieplocha, Ian T. Foster, Marianne Winslett
1997	J	`jnl`	Shared Memory Programming in Metacomputing Environments: The Global Array Approach. J. Supercomput. Jarek Nieplocha, Robert J. Harrison
1996	J	`jnl`	Global arrays: A nonuniform memory access programming model for high-performance computers. J. Supercomput. Jarek Nieplocha, Robert J. Harrison, Richard J. Littlefield
1996	J	`jnl`	High-performance computing in chemistry: NW Chem. Future Gener. Comput. Syst. Martyn F. Guest, Edoardo Aprà, David E. Bernholdt, Herbert A. Früchtl, Robert J. Harrison, Ricky A. Kendall, R. A. Kutteh, X. Long, John B. Nicholas, Jeffrey A. Nichols, H. L. Taylor, Adrian T. Wong, George I. Fann, Richard J. Littlefield, Jarek Nieplocha
1996	A	`conf`	Shared Memory NUMA Programming on I-WAY. HPDC Jarek Nieplocha, Robert J. Harrison
1996	J	`jnl`	Toward high-performance computational chemistry: II. A scalable self-consistent field program. J. Comput. Chem. Robert J. Harrison, Martyn F. Guest, Ricky A. Kendall, David E. Bernholdt, Adrian T. Wong, Mark Stave, James L. Anchell, Anthony C. Hess, Rik J. Littlefield, George L. Fann, Jarek Nieplocha, Greg S. Thomas, David Elwood, Jeffrey L. Tilson, Ron L. Shepard, Albert F. Wagner, Ian T. Foster, Ewing L. Lusk, Rick Stevens
1995	—	`conf`	High Performance Computational Chemistry: NWChem and Fully Distributed Parallel Applications. PARA Martyn F. Guest, Edoardo Aprà, David E. Bernholdt, Herbert A. Früchtl, Robert J. Harrison, Ricky A. Kendall, R. A. Kutteh, X. Long, John B. Nicholas, Jeffrey A. Nichols, H. L. Taylor, Adrian T. Wong, George I. Fann, Richard J. Littlefield, Jarek Nieplocha
1995	—	`conf`	Performance Improvement of Asynchronous Iterations by Non-Uniform Load Distribution. PP Jarek Nieplocha, Tsun-Zee Mai
1994	A	`conf`	Global arrays: a portable "shared-memory" programming model for distributed memory computers. SC Jarek Nieplocha, Robert J. Harrison, Richard J. Littlefield