Jan Komorowski

16 papers A 1Misc 1Journal 11Unranked 1
YearRankTypeTitle / Venue / Authors
2023 J jnl
Sensors
Salvador Daniel Rivas-Carrillo, Evgeny E. Akkuratov, Hector Valdez Ruvalcaba, Angel Vargas-Sanchez, Jan Komorowski, Daniel San-Juan, Manfred G. Grabherr
2021 J jnl
BMC Bioinform.
Mateusz Garbulowski, Klev Diamanti, Karolina Smolinska, Nicholas Baltzer, Patricia Stoll, Susanne Bornelöv, Aleksander Øhrn, Lars Feuk, Jan Komorowski
2020 J jnl
Nat.
Esther Rheinbay, Morten Muhlig Nielsen, Federico Abascal, Jeremiah Wala, Ofer Shapira, Grace Tiao, Henrik Hornshøj, Julian M. Hess, Randi Istrup Juul, Ziao Lin, Lars Feuerbach, Radhakrishnan Sabarinathan, Tobias Madsen, Jaegil Kim, Loris Mularoni, Shimin Shuai, Andrés Lanzós, Carl Herrmann, Yosef E. Maruvka, Ciyue Shen, Samirkumar B. Amin, Pratiti Bandopadhayay, Johanna Bertl, Keith A. Boroevich, John Busanovich, Joana Carlevaro-Fita, Dimple Chakravarty, Calvin Wing Yiu Chan, David Craft, Priyanka Dhingra, Klev Diamanti, Nuno A. Fonseca, Abel González-Pérez, Qianyun Guo, Mark P. Hamilton, Nicholas J. Haradhvala, Chen Hong, Keren Isaev, Todd A. Johnson, Malene Juul, André Kahles, Abdullah Kahraman, Youngwook Kim, Jan Komorowski, Kiran Kumar, Sushant Kumar, Donghoon Lee, Kjong-Van Lehmann, Yilong Li, Eric Minwei Liu, Lucas Lochovsky, Keunchil Park, Oriol Pich, Nicola D. Roberts, Gordon Saksena, Steven E. Schumacher, Nikos Sidiropoulos, Lina Sieverling, Nasa Sinnott-Armstrong, Chip Stewart, David Tamborero, Jose M. C. Tubio, Husen M. Umer, Liis Uusküla-Reimand, Claes Wadelius, Lina Wadi, Xiaotong Yao, Cheng-Zhong Zhang, Jing Zhang, James E. Haber, Asger Hobolth, Marcin Imielinski, Manolis Kellis, Michael S. Lawrence, Christian von Mering, Hidewaki Nakagawa, Benjamin J. Raphael, Mark A. Rubin, Chris Sander, Lincoln D. Stein, Joshua M. Stuart, Tatsuhiko Tsunoda, David A. Wheeler, Rory Johnson, Jüri Reimand, Mark Gerstein, Ekta Khurana, Peter J. Campbell, Núria López-Bigas, Gary D. Bader, Jonathan Barenboim, Rameen Beroukhim, Søren Brunak, Ken Chen, Jung Kyoon Choi, Jordi Deu-Pons, J. Lynn Fink, Joan Frigola, Carlo Gambacorti Passerini, Dale W. Garsed, Gad Getz, Ivo Glynne Gut, David Haan, Arif Ozgun Harmanci, Mohamed Helmy, Ermin Hodzic, José M. G. Izarzugaza, Jong K. Kim, Jan O. Korbel, Erik Larsson, Shantao Li, Xiaotong Li, Shaoke Lou, Kathleen Marchal, Iñigo Martincorena, Alexander Martínez-Fundichely, Patrick D. McGillivray, William Meyerson, Ferran Muiños, Marta Paczkowska, Kiejung Park, Jakob Skou Pedersen, Tirso Pons, Sergio Pulido-Tamayo, Iker Reyes-Salazar, Matthew A. Reyna, Carlota Rubio-Perez, Süleyman Cenk Sahinalp, Leonidas Salichos, Mark Shackleton, Raunak Shrestha, Alfonso Valencia, Miguel Vazquez, Lieven P. C. Verbeke, Jiayin Wang, Jonathan Warrell, Sebastian M. Waszak, Joachim Weischenfeldt, Guanming Wu, Jun Yu, Xuanping Zhang, Yan Zhang, Zhongming Zhao, Lihua Zou, Kadir C. Akdemir, Eva G. Alvarez, Adrian Baez-Ortega, Paul C. Boutros, David D. L. Bowtell, Benedikt Brors, Kathleen H. Burns, Kin Chan, Isidro Cortés-Ciriano, Ana Dueso-Barroso, Andrew J. Dunford, Paul A. Edwards, Xavier Estivill, Dariush Etemadmoghadam, Milana Frenkel-Morgenstern, Dmitry A. Gordenin, Barbara Hutter, David T. W. Jones, Young Seok Ju, Marat D. Kazanov, Leszek J. Klimczak, Youngil Koh, Eunjung Alice Lee, Jake June-Koo Lee, Andy G. Lynch, Geoff MacIntyre, Florian Markowetz, Matthew Meyerson, Satoru Miyano, Fabio C. P. Navarro, Stephan Ossowski, Peter J. Park, John V. Pearson, Montserrat Puiggròs, Karsten Rippe, Steven A. Roberts, Bernardo Rodriguez-Martin, Ralph Scully, David Torrents, Izar Villasante, Nicola Waddell, Jeremiah A. Wala, Lixing Yang, Sung-Soo Yoon, Jorge Zamora
2020 J jnl
Trans. Rough Sets
Nicholas Baltzer, Jan Komorowski
2018 conf
eScience
Nicholas Baltzer, Mari Nygård, Karin Sundstrom, Joakim Dillner, Jan Nygård, Jan Komorowski
2016 J jnl
BMC Bioinform.
Behrooz Torabi Moghadam, Michal Dabrowski, Bozena Kaminska, Manfred G. Grabherr, Jan Komorowski
2016 ch.
Challenges in Computational Statistics and Data Mining
Susanne Bornelöv, Jan Komorowski
2014 J jnl
BMC Bioinform.
Susanne Bornelöv, Simon Marillet, Jan Komorowski
2013 J jnl
BMC Bioinform.
Marcin Kruczyk, Husen M. Umer, Stefan Enroth, Jan Komorowski
2013 J jnl
Fundam. Informaticae
Marcin Kruczyk, Nicholas Baltzer, Jakub Mieczkowski, Michal Draminski, Jacek Koronacki, Jan Komorowski
2010 J jnl
BioData Min.
Stefan Enroth, Robin Andersson, Claes Wadelius, Jan Komorowski
2008 J jnl
J. Chem. Inf. Model.
Aleksejs Kontijevskis, Jan Komorowski, Jarl E. S. Wikberg
2007 J jnl
BMC Syst. Biol.
Claes R. Andersson, Torgeir R. Hvidsten, Anders Isaksson, Mats G. Gustafsson, Jan Komorowski
2001 A conf
SDM
Tor-Kristian Jenssen, Lisa M. J. Öberg, Magnus L. Andersson, Jan Komorowski
1997 Misc conf
AMIA
Aleksander Øhrn, Staal Amund Vinterbo, Piotr Szymanski, Jan Komorowski
1995 ed.
SCAI
Agnar Aamodt, Jan Komorowski
redb/extractors/decompiler/bninja/analysis/scores.py
← Index redb/extractors/decompiler/bninja/analysis/scores.py python
from collections import deque
from binaryninja import highlevelil
from binaryninja.enums import HighLevelILOperation


class ObfuscationScores:
    def __init__(self, hlil_function):
        self.function = hlil_function
        self._basic_blocks = list(hlil_function.basic_blocks) if hlil_function and hlil_function.basic_blocks else []
        self._block_count = len(self._basic_blocks)

    def flattened_score(self):
        """
        A heuristic for detecting control flow flattening from Tim Blazytko.
        Source: https://www.synthesis.to/2021/03/03/flattening_detection.html
        """
        if self._block_count == 0:
            return 0.0

        max_flattening_ratio = 0.0

        for basic_block in self._basic_blocks:
            dominated = get_dominated_by(basic_block)
            if not any(edge.source in dominated for edge in basic_block.incoming_edges):
                continue
            ratio = len(dominated) / self._block_count
            if ratio > max_flattening_ratio:
                max_flattening_ratio = ratio

        return max_flattening_ratio

    def MBA_score(self):
        """
        Score for MBA is obtained by the number of instructions that have at least one arithmetic operation and
        one logic operation DIVIDED by the number of instructions.
        """
        total = 0
        mba_count = 0

        for ins in self.function.instructions:
            total += 1
            if uses_mba(ins):
                mba_count += 1

        if total == 0:
            return 0.0

        return mba_count / total

def get_dominated_by(dominator):
    """
    Get the dominators that are dominated by the given dominator.
    (To recall the theory, a basic block B is called dominator for A if every path from START
    to A must include B)
    """
    result = set()
    worklist = deque([dominator])

    while worklist:
        block = worklist.popleft()
        if block in result:
            continue
        result.add(block)
        worklist.extend(block.dominator_tree_children)

    return result

_ARITHMETIC_OPS = frozenset({
    HighLevelILOperation.HLIL_ADD,
    HighLevelILOperation.HLIL_NEG,
    HighLevelILOperation.HLIL_SUB,
    HighLevelILOperation.HLIL_MUL,
    HighLevelILOperation.HLIL_DIVS,
    HighLevelILOperation.HLIL_MODS,
})

_LOGIC_OPS = frozenset({
    HighLevelILOperation.HLIL_NOT,
    HighLevelILOperation.HLIL_AND,
    HighLevelILOperation.HLIL_OR,
    HighLevelILOperation.HLIL_XOR,
    HighLevelILOperation.HLIL_LSR,
    HighLevelILOperation.HLIL_LSL,
})

_MBA_OPS = _ARITHMETIC_OPS | _LOGIC_OPS

def uses_mba(hlil_instruction):
    uses_logic = False
    uses_arithmetic = False
    stack = [hlil_instruction]

    while stack:
        instruction = stack.pop()

        if not isinstance(instruction, highlevelil.HighLevelILInstruction):
            continue

        op = instruction.operation

        if op not in _MBA_OPS:
            for operand in instruction.operands:
                if isinstance(operand, highlevelil.HighLevelILInstruction):
                    stack.append(operand)
            continue

        if op in _ARITHMETIC_OPS:
            uses_arithmetic = True
        else:
            uses_logic = True

        if uses_logic and uses_arithmetic:
            return True

        for operand in instruction.operands:
            if isinstance(operand, highlevelil.HighLevelILInstruction):
                stack.append(operand)

    return False