Jan Funke - RankMe

38 papers A* 4A 2Journal 14Unranked 17

Year	Rank	Type	Title / Venue / Authors
2025	—	`conf`	An Investigation of Unsupervised Cell Tracking and Interactive Fine-Tuning. ICCVW Manan Lalit, Jan Funke
2024	J	`jnl`	DaCapo: a modular deep learning framework for scalable 3D image segmentation. CoRR William Patton, Jeff L. Rhoades, Marwan Zouinkhi, David G. Ackerman, Caroline Malin-Mayor, Diane Adjavon, Larissa Heinrich, Davis Bennett, Yurii Zubov, CellMap Project Team, Aubrey V. Weigel, Jan Funke
2024	A*	`conf`	Model Based Inference of Synaptic Plasticity Rules. NeurIPS Yash Mehta, Danil Tyulmankov, Adithya Rajagopalan, Glenn Turner, James FitzGerald, Jan Funke
2023	—	`conf`	Unpaired Image Enhancement for Neurite Segmentation in x-ray Tomography. ISBI Jeff L. Rhoades, Arlo Sheridan, Mukul Narwani, Brian Reicher, Mark Larson, Shuhan Xie, Tri Nguyen, Aaron T. Kuan, Alexandra Pacureanu, Wei-Chung Allen Lee, Jan Funke
2023	A*	`conf`	Unsupervised Learning of Object-Centric Embeddings for Cell Instance Segmentation in Microscopy Images. ICCV Steffen Wolf, Manan Lalit, Katie McDole, Jan Funke
2023	J	`jnl`	Unsupervised Learning of Object-Centric Embeddings for Cell Instance Segmentation in Microscopy Images. CoRR Steffen Wolf, Manan Lalit, Henry Westmacott, Katie McDole, Jan Funke
2022	—	`conf`	Discriminative Attribution from Paired Images. ECCV Workshops (4) Nils Eckstein, Habib Bukhari, Alexander S. Bates, Gregory S. X. E. Jefferis, Jan Funke
2022	—	`conf`	Tracking by Weakly-Supervised Learning and Graph Optimization for Whole-Embryo C. elegans lineages. MICCAI (4) Peter Hirsch, Caroline Malin-Mayor, Anthony Santella, Stephan Preibisch, Dagmar Kainmueller, Jan Funke
2022	J	`jnl`	Tracking by weakly-supervised learning and graph optimization for whole-embryo C. elegans lineages. CoRR Peter Hirsch, Caroline Malin-Mayor, Anthony Santella, Stephan Preibisch, Dagmar Kainmueller, Jan Funke
2021	J	`jnl`	Discriminative Attribution from Counterfactuals. CoRR Nils Eckstein, Alexander S. Bates, Gregory S. X. E. Jefferis, Jan Funke
2021	A*	`conf`	How Shift Equivariance Impacts Metric Learning for Instance Segmentation. ICCV Josef Lorenz Rumberger, Xiaoyan Yu, Peter Hirsch, Melanie Dohmen, Vanessa Emanuela Guarino, Ashkan Mokarian, Lisa Mais, Jan Funke, Dagmar Kainmueller
2021	J	`jnl`	How Shift Equivariance Impacts Metric Learning for Instance Segmentation. CoRR Josef Lorenz Rumberger, Xiaoyan Yu, Peter Hirsch, Melanie Dohmen, Vanessa Emanuela Guarino, Ashkan Mokarian, Lisa Mais, Jan Funke, Dagmar Kainmueller
2020	A	`conf`	Inpainting Networks Learn to Separate Cells in Microscopy Images. BMVC Steffen Wolf, Fred A. Hamprecht, Jan Funke
2020	J	`jnl`	Instance Separation Emerges from Inpainting. CoRR Steffen Wolf, Fred A. Hamprecht, Jan Funke
2020	—	`conf`	Microtubule Tracking in Electron Microscopy Volumes. MICCAI (5) Nils Eckstein, Julia M. Buhmann, Matthew Cook, Jan Funke
2020	J	`jnl`	Microtubule Tracking in Electron Microscopy Volumes. CoRR Nils Eckstein, Julia M. Buhmann, Matthew Cook, Jan Funke
2019	J	`jnl`	Large Scale Image Segmentation with Structured Loss Based Deep Learning for Connectome Reconstruction. IEEE Trans. Pattern Anal. Mach. Intell. Jan Funke, Fabian Tschopp, William Grisaitis, Arlo Sheridan, Chandan Singh, Stephan Saalfeld, Srinivas C. Turaga
2018	—	`conf`	A Benchmark for Epithelial Cell Tracking. ECCV Workshops (6) Jan Funke, Lisa Mais, Andrew Champion, Natalie Dye, Dagmar Kainmueller
2018	J	`jnl`	Synaptic Cleft Segmentation in Non-Isotropic Volume Electron Microscopy of the Complete Drosophila Brain. CoRR Larissa Heinrich, Jan Funke, Constantin Pape, Juan Nunez-Iglesias, Stephan Saalfeld
2018	—	`conf`	Synaptic Cleft Segmentation in Non-isotropic Volume Electron Microscopy of the Complete Drosophila Brain. MICCAI (2) Larissa Heinrich, Jan Funke, Constantin Pape, Juan Nunez-Iglesias, Stephan Saalfeld
2018	—	`conf`	Synaptic Partner Prediction from Point Annotations in Insect Brains. MICCAI (2) Julia M. Buhmann, Renate Krause, Rodrigo Ceballos Lentini, Nils Eckstein, Matthew Cook, Srinivas C. Turaga, Jan Funke
2018	J	`jnl`	Synaptic partner prediction from point annotations in insect brains. CoRR Julia M. Buhmann, Renate Krause, Rodrigo Ceballos Lentini, Nils Eckstein, Matthew Cook, Srinivas C. Turaga, Jan Funke
2018	—	`conf`	The candidate multi-cut for cell segmentation. ISBI Jan Funke, Chong Zhang, Tobias Pietzsch, Miguel Ángel González Ballester, Stephan Saalfeld
2017	J	`jnl`	A Deep Structured Learning Approach Towards Automating Connectome Reconstruction from 3D Electron Micrographs. CoRR Jan Funke, Fabian Tschopp, William Grisaitis, Arlo Sheridan, Chandan Singh, Stephan Saalfeld, Srinivas C. Turaga
2017	J	`jnl`	The Candidate Multi-Cut for Cell Segmentation. CoRR Jan Funke, Chong Zhang, Tobias Pietzsch, Stephan Saalfeld
2016	—	`conf`	Accurate and Linear Time Pose Estimation from Points and Lines. ECCV (7) Alexander Vakhitov, Jan Funke, Francesc Moreno-Noguer
2016	—	`conf`	Efficient convolutional neural networks for pixelwise classification on heterogeneous hardware systems. ISBI Fabian Tschopp, Julien N. P. Martel, Srinivas C. Turaga, Matthew Cook, Jan Funke
2016	—	`conf`	Structured learning of assignment models for neuron reconstruction to minimize topological errors. ISBI Jan Funke, Jonas Klein, Francesc Moreno-Noguer, Albert Cardona, Matthew Cook
2016	—	`conf`	Tracking of microtubules in anisotropic volumes of neural tissue. ISBI Julia M. Buhmann, Stephan Gerhard, Matthew Cook, Jan Funke
2015	J	`jnl`	A Tolerant Edit Distance for Evaluation and Training of Electron Microscopy Reconstruction Algorithms. CoRR Jan Funke, Jonas Klein, Albert Cardona, Matthew Cook
2015	—	`conf`	Learning to Segment: Training Hierarchical Segmentation under a Topological Loss. MICCAI (3) Jan Funke, Fred A. Hamprecht, Chong Zhang
2015	—	`conf`	Who Is Talking to Whom: Synaptic Partner Detection in Anisotropic Volumes of Insect Brain. MICCAI (1) Anna Kreshuk, Jan Funke, Albert Cardona, Fred A. Hamprecht
2014	—	`—`	Automatic Neuron Reconstruction from Anisotropic Electron Microscopy Volumes. Jan Funke
2014	—	`conf`	Candidate Sampling for Neuron Reconstruction from Anisotropic Electron Microscopy Volumes. MICCAI (1) Jan Funke, Julien N. P. Martel, Stephan Gerhard, Björn Andres, Dan C. Ciresan, Alessandro Giusti, Luca Maria Gambardella, Jürgen Schmidhuber, Hanspeter Pfister, Albert Cardona, Matthew Cook
2014	—	`conf`	Optimal Joint Segmentation and Tracking of Escherichia Coli in the Mother Machine. BAMBI Florian Jug, Tobias Pietzsch, Dagmar Kainmüller, Jan Funke, Matthias Kaiser, Erik van Nimwegen, Carsten Rother, Gene Myers
2012	A*	`conf`	Efficient automatic 3D-reconstruction of branching neurons from EM data. CVPR Jan Funke, Björn Andres, Fred A. Hamprecht, Albert Cardona, Matthew Cook
2011	J	`jnl`	Multi-Hypothesis CRF-Segmentation of Neural Tissue in Anisotropic EM Volumes CoRR Jan Funke, Björn Andres, Fred A. Hamprecht, Albert Cardona, Matthew Cook
2009	A	`conf`	A Framework For Evaluating Visual SLAM. BMVC Tobias Pietzsch, Jan Funke