Jan Funke

38 papers A* 4A 2Journal 14Unranked 17
YearRankTypeTitle / Venue / Authors
2025 — conf
An Investigation of Unsupervised Cell Tracking and Interactive Fine-Tuning.
ICCVW
Manan Lalit, Jan Funke
2024 J jnl
DaCapo: a modular deep learning framework for scalable 3D image segmentation.
CoRR
William Patton, Jeff L. Rhoades, Marwan Zouinkhi, David G. Ackerman, Caroline Malin-Mayor, Diane Adjavon, Larissa Heinrich, Davis Bennett, Yurii Zubov, CellMap Project Team, Aubrey V. Weigel, Jan Funke
2024 A* conf
Model Based Inference of Synaptic Plasticity Rules.
NeurIPS
Yash Mehta, Danil Tyulmankov, Adithya Rajagopalan, Glenn Turner, James FitzGerald, Jan Funke
2023 — conf
Unpaired Image Enhancement for Neurite Segmentation in x-ray Tomography.
ISBI
Jeff L. Rhoades, Arlo Sheridan, Mukul Narwani, Brian Reicher, Mark Larson, Shuhan Xie, Tri Nguyen, Aaron T. Kuan, Alexandra Pacureanu, Wei-Chung Allen Lee, Jan Funke
2023 A* conf
Unsupervised Learning of Object-Centric Embeddings for Cell Instance Segmentation in Microscopy Images.
ICCV
Steffen Wolf, Manan Lalit, Katie McDole, Jan Funke
2023 J jnl
Unsupervised Learning of Object-Centric Embeddings for Cell Instance Segmentation in Microscopy Images.
CoRR
Steffen Wolf, Manan Lalit, Henry Westmacott, Katie McDole, Jan Funke
2022 — conf
Discriminative Attribution from Paired Images.
ECCV Workshops (4)
Nils Eckstein, Habib Bukhari, Alexander S. Bates, Gregory S. X. E. Jefferis, Jan Funke
2022 — conf
Tracking by Weakly-Supervised Learning and Graph Optimization for Whole-Embryo C. elegans lineages.
MICCAI (4)
Peter Hirsch, Caroline Malin-Mayor, Anthony Santella, Stephan Preibisch, Dagmar Kainmueller, Jan Funke
2022 J jnl
Tracking by weakly-supervised learning and graph optimization for whole-embryo C. elegans lineages.
CoRR
Peter Hirsch, Caroline Malin-Mayor, Anthony Santella, Stephan Preibisch, Dagmar Kainmueller, Jan Funke
2021 J jnl
Discriminative Attribution from Counterfactuals.
CoRR
Nils Eckstein, Alexander S. Bates, Gregory S. X. E. Jefferis, Jan Funke
2021 A* conf
How Shift Equivariance Impacts Metric Learning for Instance Segmentation.
ICCV
Josef Lorenz Rumberger, Xiaoyan Yu, Peter Hirsch, Melanie Dohmen, Vanessa Emanuela Guarino, Ashkan Mokarian, Lisa Mais, Jan Funke, Dagmar Kainmueller
2021 J jnl
How Shift Equivariance Impacts Metric Learning for Instance Segmentation.
CoRR
Josef Lorenz Rumberger, Xiaoyan Yu, Peter Hirsch, Melanie Dohmen, Vanessa Emanuela Guarino, Ashkan Mokarian, Lisa Mais, Jan Funke, Dagmar Kainmueller
2020 A conf
Inpainting Networks Learn to Separate Cells in Microscopy Images.
BMVC
Steffen Wolf, Fred A. Hamprecht, Jan Funke
2020 J jnl
Instance Separation Emerges from Inpainting.
CoRR
Steffen Wolf, Fred A. Hamprecht, Jan Funke
2020 — conf
Microtubule Tracking in Electron Microscopy Volumes.
MICCAI (5)
Nils Eckstein, Julia M. Buhmann, Matthew Cook, Jan Funke
2020 J jnl
Microtubule Tracking in Electron Microscopy Volumes.
CoRR
Nils Eckstein, Julia M. Buhmann, Matthew Cook, Jan Funke
2019 J jnl
Large Scale Image Segmentation with Structured Loss Based Deep Learning for Connectome Reconstruction.
IEEE Trans. Pattern Anal. Mach. Intell.
Jan Funke, Fabian Tschopp, William Grisaitis, Arlo Sheridan, Chandan Singh, Stephan Saalfeld, Srinivas C. Turaga
2018 — conf
A Benchmark for Epithelial Cell Tracking.
ECCV Workshops (6)
Jan Funke, Lisa Mais, Andrew Champion, Natalie Dye, Dagmar Kainmueller
2018 J jnl
Synaptic Cleft Segmentation in Non-Isotropic Volume Electron Microscopy of the Complete Drosophila Brain.
CoRR
Larissa Heinrich, Jan Funke, Constantin Pape, Juan Nunez-Iglesias, Stephan Saalfeld
2018 — conf
Synaptic Cleft Segmentation in Non-isotropic Volume Electron Microscopy of the Complete Drosophila Brain.
MICCAI (2)
Larissa Heinrich, Jan Funke, Constantin Pape, Juan Nunez-Iglesias, Stephan Saalfeld
2018 — conf
Synaptic Partner Prediction from Point Annotations in Insect Brains.
MICCAI (2)
Julia M. Buhmann, Renate Krause, Rodrigo Ceballos Lentini, Nils Eckstein, Matthew Cook, Srinivas C. Turaga, Jan Funke
2018 J jnl
Synaptic partner prediction from point annotations in insect brains.
CoRR
Julia M. Buhmann, Renate Krause, Rodrigo Ceballos Lentini, Nils Eckstein, Matthew Cook, Srinivas C. Turaga, Jan Funke
2018 — conf
The candidate multi-cut for cell segmentation.
ISBI
Jan Funke, Chong Zhang, Tobias Pietzsch, Miguel Ángel González Ballester, Stephan Saalfeld
2017 J jnl
A Deep Structured Learning Approach Towards Automating Connectome Reconstruction from 3D Electron Micrographs.
CoRR
Jan Funke, Fabian Tschopp, William Grisaitis, Arlo Sheridan, Chandan Singh, Stephan Saalfeld, Srinivas C. Turaga
2017 J jnl
The Candidate Multi-Cut for Cell Segmentation.
CoRR
Jan Funke, Chong Zhang, Tobias Pietzsch, Stephan Saalfeld
2016 — conf
Accurate and Linear Time Pose Estimation from Points and Lines.
ECCV (7)
Alexander Vakhitov, Jan Funke, Francesc Moreno-Noguer
2016 — conf
Efficient convolutional neural networks for pixelwise classification on heterogeneous hardware systems.
ISBI
Fabian Tschopp, Julien N. P. Martel, Srinivas C. Turaga, Matthew Cook, Jan Funke
2016 — conf
Structured learning of assignment models for neuron reconstruction to minimize topological errors.
ISBI
Jan Funke, Jonas Klein, Francesc Moreno-Noguer, Albert Cardona, Matthew Cook
2016 — conf
Tracking of microtubules in anisotropic volumes of neural tissue.
ISBI
Julia M. Buhmann, Stephan Gerhard, Matthew Cook, Jan Funke
2015 J jnl
A Tolerant Edit Distance for Evaluation and Training of Electron Microscopy Reconstruction Algorithms.
CoRR
Jan Funke, Jonas Klein, Albert Cardona, Matthew Cook
2015 — conf
Learning to Segment: Training Hierarchical Segmentation under a Topological Loss.
MICCAI (3)
Jan Funke, Fred A. Hamprecht, Chong Zhang
2015 — conf
Who Is Talking to Whom: Synaptic Partner Detection in Anisotropic Volumes of Insect Brain.
MICCAI (1)
Anna Kreshuk, Jan Funke, Albert Cardona, Fred A. Hamprecht
2014 — —
Automatic Neuron Reconstruction from Anisotropic Electron Microscopy Volumes.
Jan Funke
2014 — conf
Candidate Sampling for Neuron Reconstruction from Anisotropic Electron Microscopy Volumes.
MICCAI (1)
Jan Funke, Julien N. P. Martel, Stephan Gerhard, Björn Andres, Dan C. Ciresan, Alessandro Giusti, Luca Maria Gambardella, Jürgen Schmidhuber, Hanspeter Pfister, Albert Cardona, Matthew Cook
2014 — conf
Optimal Joint Segmentation and Tracking of Escherichia Coli in the Mother Machine.
BAMBI
Florian Jug, Tobias Pietzsch, Dagmar Kainmüller, Jan Funke, Matthias Kaiser, Erik van Nimwegen, Carsten Rother, Gene Myers
2012 A* conf
Efficient automatic 3D-reconstruction of branching neurons from EM data.
CVPR
Jan Funke, Björn Andres, Fred A. Hamprecht, Albert Cardona, Matthew Cook
2011 J jnl
Multi-Hypothesis CRF-Segmentation of Neural Tissue in Anisotropic EM Volumes
CoRR
Jan Funke, Björn Andres, Fred A. Hamprecht, Albert Cardona, Matthew Cook
2009 A conf
A Framework For Evaluating Visual SLAM.
BMVC
Tobias Pietzsch, Jan Funke