Jan F. Prins

73 papers A* 8A 7B 8C 3Misc 2Journal 20Unranked 22
YearRankTypeTitle / Venue / Authors
2017 A conf
An Adaptive Core-Specific Runtime for Energy Efficiency.
IPDPS
Sridutt Bhalachandra, Allan Porterfield, Stephen L. Olivier, Jan F. Prins
2017 B conf
E Pluribus Unum: United States of Single Cells.
RECOMB
Joshua D. Welch, Alexander J. Hartemink, Jan F. Prins
2017 — conf
Improving Energy Efficiency in Memory-constrained Applications Using Core-specific Power Control.
E2SC@SC
Sridutt Bhalachandra, Allan Porterfield, Stephen L. Olivier, Jan F. Prins, Robert J. Fowler
2017 Misc conf
Performance and Scalability Study of FMM Kernels on Novel Multi- and Many-core Architectures.
ICCS
Antón Rey, Francisco D. Igual, Manuel Prieto-Matías, Jan F. Prins
2017 C conf
The Economic Case for Cloud-Based Computation for Robot Motion Planning.
ISRR
Jeffrey Ichnowski, Jan F. Prins, Ron Alterovitz
2016 — conf
Asynchronous In Situ Connected-Components Analysis for Complex Fluid flows.
ISAV@SC
James E. McClure, Mark A. Berrill, Jan F. Prins, Cass T. Miller
2016 C conf
Cloud-based Motion Plan Computation for Power-Constrained Robots.
WAFR
Jeffrey Ichnowski, Jan F. Prins, Ron Alterovitz
2016 B conf
SLICER: Inferring Branched, Nonlinear Cellular Trajectories from Single Cell RNA-seq Data.
RECOMB
Joshua D. Welch, Ziqing Liu, Li Wang, Junjie Lu, Paul Lerou, Jeremy E. Purvis, Li Qian, Alexander J. Hartemink, Jan F. Prins
2015 — conf
Using Dynamic Duty Cycle Modulation to Improve Energy Efficiency in High Performance Computing.
IPDPS Workshops
Sridutt Bhalachandra, Allan Porterfield, Jan F. Prins
2014 J jnl
A novel heterogeneous algorithm to simulate multiphase flow in porous media on multicore CPU-GPU systems.
Comput. Phys. Commun.
James E. McClure, Jan F. Prins, Cass T. Miller
2014 A* conf
Cache-aware asymptotically-optimal sampling-based motion planning.
ICRA
Jeffrey Ichnowski, Jan F. Prins, Ron Alterovitz
2014 A conf
Petascale Application of a Coupled CPU-GPU Algorithm for Simulation and Analysis of Multiphase Flow Solutions in Porous Medium Systems.
IPDPS
James E. McClure, Hao Wang, Jan F. Prins, Cass T. Miller, Wu-chun Feng
2013 J jnl
A Robust Method for Transcript Quantification with RNA-Seq Data.
J. Comput. Biol.
Yan Huang, Yin Hu, Corbin D. Jones, James N. MacLeod, Derek Y. Chiang, Yufeng Liu, Jan F. Prins, Jinze Liu
2013 J jnl
Characterizing and mitigating work time inflation in task parallel programs.
Sci. Program.
Stephen L. Olivier, Bronis R. de Supinski, Martin Schulz, Jan F. Prins
2013 — conf
Dynamic Load Balancing of the Adaptive Fast Multipole Method in Heterogeneous Systems.
IPDPS Workshops
Robert E. Overman, Jan F. Prins, Laura A. Miller, Michael L. Minion
2013 — conf
Power Measurement and Concurrency Throttling for Energy Reduction in OpenMP Programs.
IPDPS Workshops
Allan Porterfield, Stephen L. Olivier, Sridutt Bhalachandra, Jan F. Prins
2012 B conf
A Robust Method for Transcript Quantification with RNA-seq Data.
RECOMB
Yan Huang, Yin Hu, Corbin D. Jones, James N. MacLeod, Derek Y. Chiang, Yufeng Liu, Jan F. Prins, Jinze Liu
2012 A conf
Characterizing and mitigating work time inflation in task parallel programs.
SC
Stephen Olivier, Bronis R. de Supinski, Martin Schulz, Jan F. Prins
2012 J jnl
OpenMP task scheduling strategies for multicore NUMA systems.
Int. J. High Perform. Comput. Appl.
Stephen Olivier, Allan Porterfield, Kyle B. Wheeler, Michael Spiegel, Jan F. Prins
2011 J jnl
FDM: a graph-based statistical method to detect differential transcription using RNA-seq data.
Bioinform.
Darshan Singh, Christian F. Orellana, Yin Hu, Corbin D. Jones, Yufeng Liu, Derek Y. Chiang, Jinze Liu, Jan F. Prins
2010 J jnl
A probabilistic framework for aligning paired-end RNA-seq data.
Bioinform.
Yin Hu, Kai Wang, Xiaping He, Derek Y. Chiang, Jan F. Prins, Jinze Liu
2010 J jnl
Comparison of OpenMP 3.0 and Other Task Parallel Frameworks on Unbalanced Task Graphs.
Int. J. Parallel Program.
Stephen Olivier, Jan F. Prins
2010 J jnl
Functional neighbors: inferring relationships between nonhomologous protein families using family-specific packing motifs.
IEEE Trans. Inf. Technol. Biomed.
Deepak Bandyopadhyay, Jun Huan, Jinze Liu, Jan F. Prins, Jack Snoeyink, Wei Wang, Alexander Tropsha
2009 — conf
Evaluating OpenMP 3.0 Run Time Systems on Unbalanced Task Graphs.
IWOMP
Stephen Olivier, Jan F. Prins
2009 J jnl
High Performance Computing with the Cell Broadband Engine.
Sci. Program.
Michael Gschwind, Fred G. Gustavson, Jan F. Prins
2009 J jnl
Identification of family-specific residue packing motifs and their use for structure-based protein function prediction: I. Method development.
J. Comput. Aided Mol. Des.
Deepak Bandyopadhyay, Jun Huan, Jan F. Prins, Jack Snoeyink, Wei Wang, Alexander Tropsha
2009 J jnl
Identification of family-specific residue packing motifs and their use for structure-based protein function prediction: II. Case studies and applications.
J. Comput. Aided Mol. Des.
Deepak Bandyopadhyay, Jun Huan, Jan F. Prins, Jack Snoeyink, Wei Wang, Alexander Tropsha
2008 J jnl
A message passing benchmark for unbalanced applications.
Simul. Model. Pract. Theory
James Dinan, Stephen Olivier, Gerald Sabin, Jan F. Prins, P. Sadayappan, Chau-Wen Tseng
2008 — conf
Functional Neighbors: Inferring Relationships between Non-Homologous Protein Families Using Family-Specific Packing Motifs.
BIBM
Deepak Bandyopadhyay, Jun Huan, Jinze Liu, Jan F. Prins, Jack Snoeyink, Wei Wang, Alexander Tropsha
2008 C conf
Genotype Sequence Segmentation: Handling Constraints and Noise.
WABI
Qi Zhang, Wei Wang, Leonard McMillan, Jan F. Prins, Fernando Pardo-Manuel de Villena, David Threadgill
2008 B conf
Scalable Dynamic Load Balancing Using UPC.
ICPP
Stephen Olivier, Jan F. Prins
2007 A conf
Dynamic Load Balancing of Unbalanced Computations Using Message Passing.
IPDPS
James Dinan, Stephen Olivier, Gerald Sabin, Jan F. Prins, P. Sadayappan, Chau-Wen Tseng
2007 A conf
PoClustering: Lossless Clustering of Dissimilarity Data.
SDM
Jinze Liu, Qi Zhang, Wei Wang, Leonard McMillan, Jan F. Prins
2007 A conf
Porting the GROMACS Molecular Dynamics Code to the Cell Processor.
IPDPS
Stephen Olivier, Jan F. Prins, Jeff Derby, Ken V. Vu
2006 A* conf
Clustering pair-wise dissimilarity data into partially ordered sets.
KDD
Jinze Liu, Qi Zhang, Wei Wang, Leonard McMillan, Jan F. Prins
2006 J jnl
Local Structure Comparison of Proteins.
Adv. Comput.
Jun Huan, Jan F. Prins, Wei Wang
2006 A conf
Mining Approximate Frequent Itemsets In the Presence of Noise: Algorithm and Analysis.
SDM
Jinze Liu, Susan Paulsen, Xing Sun, Wei Wang, Andrew B. Nobel, Jan F. Prins
2006 — conf
UTS: An Unbalanced Tree Search Benchmark.
LCPC
Stephen Olivier, Jun Huan, Jinze Liu, Jan F. Prins, James Dinan, P. Sadayappan, Chau-Wen Tseng
2005 J jnl
Comparing Graph Representations of Protein Structure for Mining Family-Specific Residue-Based Packing Motifs.
J. Comput. Biol.
Jun Huan, Deepak Bandyopadhyay, Wei Wang, Jack Snoeyink, Jan F. Prins, Alexander Tropsha
2005 A* conf
Mining Approximate Frequent Itemsets from Noisy Data.
ICDM
Jinze Liu, Susan Paulsen, Wei Wang, Andrew B. Nobel, Jan F. Prins
2004 Misc conf
Accurate Classification of Protein Structural Families Using Coherent Subgraph Analysis.
Pacific Symposium on Biocomputing
Jun Huan, Wei Wang, Anglina Washington, Jan F. Prins, Ruchir Shah, Alexander Tropsha
2004 B conf
Mining protein family specific residue packing patterns from protein structure graphs.
RECOMB
Jun Huan, Wei Wang, Deepak Bandyopadhyay, Jack Snoeyink, Jan F. Prins, Alexander Tropsha
2004 A* conf
SPIN: mining maximal frequent subgraphs from graph databases.
KDD
Jun Huan, Wei Wang, Jan F. Prins, Jiong Yang
2003 A* conf
Efficient Mining of Frequent Subgraphs in the Presence of Isomorphism.
ICDM
Jun Huan, Wei Wang, Jan F. Prins
2003 — conf
Evaluating the Impact of Programming Language Features on the Performance of Parallel Applications on Cluster Architectures.
LCPC
Konstantin Berlin, Jun Huan, Mary Jacob, Garima Kochhar, Jan F. Prins, William W. Pugh, P. Sadayappan, Jaime Spacco, Chau-Wen Tseng
2003 — conf
Reconstruction of Ancestral Gene Order after Segmental Duplication and Gene Loss.
CSB
Jun Huan, Jan F. Prins, Wei Wang, Todd J. Vision
2001 — ed.
Languages and Compilers for Parallel Computing, 13th International Workshop, LCPC 2000, Yorktown Heights, NY, USA, August 10-12, 2000, Revised Papers
LCPC
Samuel P. Midkiff, José E. Moreira, Manish Gupta, Siddhartha Chatterjee, Jeanne Ferrante, Jan F. Prins, William W. Pugh, Chau-Wen Tseng
2000 J jnl
A Design Methodology for Data-Parallel Applications.
IEEE Trans. Software Eng.
Lars S. Nyland, Jan F. Prins, Allen Goldberg, Peter Mills
2000 B conf
Flattening Is an Improvement.
SAS
James Riely, Jan F. Prins
1999 J jnl
A virtual environment for steered molecular dynamics.
Future Gener. Comput. Syst.
Jan F. Prins, Jan Hermans, Geoffrey Mann, Lars S. Nyland, Martin Simons
1999 J jnl
Irregular computations in Fortran - expression and implementation strategies.
Sci. Program.
Jan F. Prins, Siddhartha Chatterjee, Martin Simons
1999 — ed.
Languages and Compilers for Parallel Computing, 11th International Workshop, LCPC'98, Chapel Hill, NC, USA, August 7-9, 1998, Proceedings
LCPC
Siddhartha Chatterjee, Jan F. Prins, Larry Carter, Jeanne Ferrante, Zhiyuan Li, David C. Sehr, Pen-Chung Yew
1998 — conf
Expressing Irregular Computations in Modern Fortran Dialects.
LCR
Jan F. Prins, Siddhartha Chatterjee, Martin Simons
1998 — conf
Modeling Dynamic Load Balancing in Molecular Dynamics to Achieve Scalable Parallel Execution.
IRREGULAR
Lars S. Nyland, Jan F. Prins, Ru Huai Yun, Jan Hermans, Hye-Chung Kum, Lei Wang
1997 J jnl
Achieving Scalable Parallel Molecular Dynamics Using Dynamic Spatial Domain Decomposition Techniques.
J. Parallel Distributed Comput.
Lars S. Nyland, Jan F. Prins, Ru Huai Yun, Jan Hermans, Hye-Chung Kum, Lei Wang
1997 — conf
KHEPERA: A System for Rapid Implementation of Domain Specific Languages.
DSL
Rickard E. Faith, Lars S. Nyland, Jan F. Prins
1996 — conf
A Refinement Methodology for Developing Data-Parallel Applications.
Euro-Par, Vol. I
Lars S. Nyland, Jan F. Prins, Allen Goldberg, Peter Mills, John H. Reif, Robert A. Wagner
1995 — conf
Piecewise Execution of Nested Data-Parallel Programs.
LCPC
Daniel W. Palmer, Jan F. Prins, Siddhartha Chatterjee, Rickard E. Faith
1994 — conf
Connected components algorithms for mesh-connected parallel computers.
Parallel Algorithms
Steve Goddard, Subodh Kumar, Jan F. Prins
1994 — conf
Specification and Development of Parallel Algorithms with the Proteus System.
Specification of Parallel Algorithms
Allen Goldberg, Peter Mills, Lars S. Nyland, Jan F. Prins, John H. Reif, James Riely
1993 B conf
Transforming High-Level Data-Parallel Programs into Vector Operations.
PPoPP
Jan F. Prins, Daniel W. Palmer
1992 B conf
Implementations of Randomized Sorting on Large Parallel Machines.
SPAA
William L. Hightower, Jan F. Prins, John H. Reif
1992 — conf
Prototyping N-Body Simulation in Proteus.
IPPS
Peter Mills, Lars S. Nyland, Jan F. Prins, John H. Reif
1991 — conf
Prototyping parallel and distributed programs in Proteus.
SPDP
Peter Mills, Lars S. Nyland, Jan F. Prins, John H. Reif, Robert A. Wagner
1989 J jnl
Integrating Noninterfering Versions of Programs.
ACM Trans. Program. Lang. Syst.
Susan Horwitz, Jan F. Prins, Thomas W. Reps
1988 A* conf
Integrating Non-Interfering Versions of Programs.
POPL
Susan Horwitz, Jan F. Prins, Thomas W. Reps
1988 A* conf
On the Adequacy of Program Dependence Graphs for Representing Programs.
POPL
Susan Horwitz, Jan F. Prins, Thomas W. Reps
1988 — conf
Support for Integrating Program Variants in an Environment for Programming in the Large.
SCM
Thomas W. Reps, Susan Horwitz, Jan F. Prins
1987 J jnl
McLaren's Masterpiece.
Sci. Comput. Program.
David Gries, Jan F. Prins
1987 — —
Partial Implementations in Program Derivation.
Jan F. Prins
1985 — conf
A new notion of encapsulation.
SLIPE
David Gries, Jan F. Prins
1982 — conf
Automated testing in APL - an application of exception handling.
APL
Jan F. Prins
1982 A* conf
Monte Carlo techniques in code optimization.
MICRO
Dean Jacobs, Jan F. Prins, Peter Siegel, Kenneth Wilson