Jan Ernsting

27 papers Journal 20Unranked 7
YearRankTypeTitle / Venue / Authors
2026 J jnl
Nat. Comput. Sci.
Lukas Fisch, Nils R. Winter, Janik Goltermann, Carlotta B. C. Barkhau, Daniel Emden, Jan Ernsting, Maximilian Konowski, Ramona Leenings, Tiana Borgers, Kira Flinkenflügel, Dominik Grotegerd, Anna Kraus, Elisabeth J. Leehr, Susanne Meinert, Frederike Stein, Lea Teutenberg, Florian Thomas-Odenthal, Paula Usemann, Marco Hermesdorf, Hamidreza Jamalabadi, Andreas J. Forstner, Igor Nenadic, Benjamin Straube, Tilo Kircher, Klaus Berger, Benjamin Risse, Udo Dannlowski, Tim Hahn
2025 J jnl
Comput. Biol. Medicine
Jan Ernsting, Philipp Nikolas Beeken, Lynn Ogoniak, Jacqueline Kockwelp, Wolfgang Roll, Tim Hahn, Alexander Siegfried Busch, Benjamin Risse
2024 conf
ASMUS@MICCAI
Ramona Leenings, Maximilian Konowski, Nils R. Winter, Jan Ernsting, Lukas Fisch, Carlotta B. C. Barkhau, Udo Dannlowski, Andreas Lügering, Xiaoyi Jiang, Tim Hahn
2024 J jnl
Comput. Biol. Medicine
Lukas Fisch, Michael O. Heming, Andreas Schulte-Mecklenbeck, Catharina C. Gross, Stefan Zumdick, Carlotta B. C. Barkhau, Daniel Emden, Jan Ernsting, Ramona Leenings, Kelvin Sarink, Nils R. Winter, Udo Dannlowski, Heinz Wiendl, Gerd Meyer zu Hörste, Tim Hahn
2024 J jnl
CoRR
Jan Ernsting, Phillip Nikolas Beeken, Lynn Ogoniak, Jacqueline Kockwelp, Tim Hahn, Alexander Siegfried Busch, Benjamin Risse
2024 J jnl
Comput. Biol. Medicine
Lukas Fisch, Stefan Zumdick, Carlotta B. C. Barkhau, Daniel Emden, Jan Ernsting, Ramona Leenings, Kelvin Sarink, Nils R. Winter, Benjamin Risse, Udo Dannlowski, Tim Hahn
2024 J jnl
CoRR
Lukas Fisch, Nils R. Winter, Janik Goltermann, Carlotta B. C. Barkhau, Daniel Emden, Jan Ernsting, Maximilian Konowski, Ramona Leenings, Tiana Borgers, Kira Flinkenflügel, Dominik Grotegerd, Anna Kraus, Elisabeth J. Leehr, Susanne Meinert, Frederike Stein, Lea Teutenberg, Florian Thomas-Odenthal, Paula Usemann, Marco Hermesdorf, Hamidreza Jamalabadi, Andreas Jansen, Igor Nenadic, Benjamin Straube, Tilo Kircher, Klaus Berger, Benjamin Risse, Udo Dannlowski, Tim Hahn
2024 J jnl
CoRR
Christian Porschen, Jan Ernsting, Paul Brauckmann, Raphael Weiss, Till Würdemann, Hendrik Booke, Wida Amini, Ludwig Maidowski, Benjamin Risse, Tim Hahn, Thilo Caspar von Groote
2023 J jnl
CoRR
Lukas Fisch, Stefan Zumdick, Carlotta B. C. Barkhau, Daniel Emden, Jan Ernsting, Ramona Leenings, Kelvin Sarink, Nils R. Winter, Benjamin Risse, Udo Dannlowski, Tim Hahn
2023 J jnl
CoRR
Vladimir Belov, Tracy Erwin-Grabner, Ling-Li Zeng, Christopher R. K. Ching, André Aleman, Alyssa R. Amod, Zeynep Basgoze, Francesco Benedetti, Bianca Besteher, Katharina Brosch, Robin Bülow, Romain Colle, Colm G. Connolly, Emmanuelle Corruble, Baptiste Couvy-Duchesne, Kathryn Cullen, Udo Dannlowski, Christopher G. Davey, Annemiek Dols, Jan Ernsting, Jennifer W. Evans, Lukas Fisch, Paola Fuentes-Claramonte, Ali Saffet Gonul, Ian H. Gotlib, Hans Jörgen Grabe, Nynke A. Groenewold, Dominik Grotegerd, Tim Hahn, J. Paul Hamilton, Laura K. M. Han, Ben J. Harrison, Tiffany C. Ho, Neda Jahanshad, Alec J. Jamieson, Andriana Karuk, Tilo Kircher, Bonnie Klimes-Dougan, Sheri-Michelle Koopowitz, Thomas M. Lancaster, Ramona Leenings, Meng Li, David E. J. Linden, Frank P. MacMaster, David M. A. Mehler, Susanne Meinert, Elisa Melloni, Bryon A. Mueller, Benson Mwangi, Igor Nenadic, Amar Ojha, Yasumasa Okamoto, Mardien L. Oudega, Brenda W. J. H. Penninx, Sara Poletti, Edith Pomarol-Clotet, Maria J. Portella, Elena Pozzi, Joaquim Radua, Elena Rodríguez-Cano, Matthew D. Sacchet, Raymond Salvador, Anouk Schrantee, Kang Sim, Jair C. Soares, Aleix Solanes, Dan J. Stein, Frederike Stein, Aleks Stolicyn, Sophia I. Thomopoulos, Yara J. Toenders, Aslihan Uyar-Demir, Eduard Vieta, Yolanda Vives-Gilabert, Henry Völzke, Martin Walter, Heather C. Whalley, Sarah Whittle, Nils R. Winter, Katharina Wittfeld, Margaret J. Wright, Mon-Ju Wu, Tony T. Yang, Carlos Zarate, Dick J. Veltman, Lianne Schmaal, Paul M. Thompson, Roberto Goya-Maldonado
2023 J jnl
CoRR
Jan Ernsting, Nils R. Winter, Ramona Leenings, Kelvin Sarink, Carlotta B. C. Barkhau, Lukas Fisch, Daniel Emden, Vincent Holstein, Jonathan Repple, Dominik Grotegerd, Susanne Meinert, NAKO Investigators, Klaus Berger, Benjamin Risse, Udo Dannlowski, Tim Hahn
2023 J jnl
CoRR
Lukas Fisch, Michael O. Heming, Andreas Schulte-Mecklenbeck, Catharina C. Gross, Stefan Zumdick, Carlotta B. C. Barkhau, Daniel Emden, Jan Ernsting, Ramona Leenings, Kelvin Sarink, Nils R. Winter, Udo Dannlowski, Heinz Wiendl, Gerd Meyer zu Hörste, Tim Hahn
2021 J jnl
CoRR
Tim Hahn, Hamidreza Jamalabadi, Daniel Emden, Janik Goltermann, Jan Ernsting, Nils R. Winter, Lukas Fisch, Ramona Leenings, Kelvin Sarink, Vincent Holstein, Marius Gruber, Dominik Grotegerd, Susanne Meinert, Katharina Dohm, Elisabeth J. Leehr, Maike Richter, Lisa Sindermann, Verena Enneking, Hannah Lemke, Stephanie H. Witt, Marcella Rietschel, Katharina Brosch, Julia-Katharina Pfarr, Tina Meller, Kai Gustav Ringwald, Simon Schmitt, Frederike Stein, Igor Nenadic, Tilo Kircher, Bertram Müller-Myhsok, Till F. M. Andlauer, Jonathan Repple, Udo Dannlowski, Nils Opel
2021 J jnl
CoRR
Tim Hahn, Jan Ernsting, Nils R. Winter, Vincent Holstein, Ramona Leenings, Marie Beisemann, Lukas Fisch, Kelvin Sarink, Daniel Emden, Nils Opel, Ronny Redlich, Jonathan Repple, Dominik Grotegerd, Susanne Meinert, Jochen G. Hirsch, Thoralf Niendorf, Beate Endemann, Fabian Bamberg, Thomas Kröncke, Robin Bülow, Henry Völzke, Oyunbileg von Stackelberg, Ramona Felizitas Sowade, Lale Umutlu, Börge Schmidt, Svenja Caspers, Harald Kugel, Tilo Kircher, Benjamin Risse, Christian Gaser, James H. Cole, Udo Dannlowski, Klaus Berger
2021 J jnl
CoRR
Tim Hahn, Nils R. Winter, Jan Ernsting, Marius Gruber, Marco J. Mauritz, Lukas Fisch, Ramona Leenings, Kelvin Sarink, Julian Blanke, Vincent Holstein, Daniel Emden, Marie Beisemann, Nils Opel, Dominik Grotegerd, Susanne Meinert, Walter Heindel, Stephanie H. Witt, Marcella Rietschel, Markus M. Nöthen, Andreas J. Forstner, Tilo Kircher, Igor Nenadic, Andreas Jansen, Bertram Müller-Myhsok, Till F. M. Andlauer, Martin Walter, Martijn P. van den Heuvel, Hamidreza Jamalabadi, Udo Dannlowski, Jonathan Repple
2021 J jnl
CoRR
Lukas Fisch, Jan Ernsting, Nils R. Winter, Vincent Holstein, Ramona Leenings, Marie Beisemann, Kelvin Sarink, Daniel Emden, Nils Opel, Ronny Redlich, Jonathan Repple, Dominik Grotegerd, Susanne Meinert, Niklas Wulms, Heike Minnerup, Jochen G. Hirsch, Thoralf Niendorf, Beate Endemann, Fabian Bamberg, Thomas Kröncke, Annette Peters, Robin Bülow, Henry Völzke, Oyunbileg von Stackelberg, Ramona Felizitas Sowade, Lale Umutlu, Börge Schmidt, Svenja Caspers, Harald Kugel, Bernhard T. Baune, Tilo Kircher, Benjamin Risse, Udo Dannlowski, Klaus Berger, Tim Hahn
2021 J jnl
CoRR
Tim Hahn, Hamidreza Jamalabadi, Erfan Nozari, Nils R. Winter, Jan Ernsting, Marius Gruber, Marco J. Mauritz, Pascal Grumbach, Lukas Fisch, Ramona Leenings, Kelvin Sarink, Julian Blanke, Leon Kleine Vennekate, Daniel Emden, Nils Opel, Dominik Grotegerd, Verena Enneking, Susanne Meinert, Tiana Borgers, Melissa Klug, Elisabeth J. Leehr, Katharina Dohm, Walter Heindel, Joachim Gross, Udo Dannlowski, Ronny Redlich, Jonathan Repple
2020 J jnl
CoRR
Ramona Leenings, Nils Ralf Winter, Lucas Plagwitz, Vincent Holstein, Jan Ernsting, Jakob Steenweg, Julian Gebker, Kelvin Sarink, Daniel Emden, Dominik Grotegerd, Nils Opel, Benjamin Risse, Xiaoyi Jiang, Udo Dannlowski, Tim Hahn
2020 J jnl
CoRR
Ramona Leenings, Nils Ralf Winter, Kelvin Sarink, Jan Ernsting, Xiaoyi Jiang, Udo Dannlowski, Tim Hahn
2018 J jnl
Bioinform.
Sarah Sandmann, Mohsen Karimi, Aniek O. de Graaf, Christian Rohde, Stefanie Göllner, Julian Varghese, Jan Ernsting, Gunilla Walldin, Bert A. van der Reijden, Carsten Müller-Tidow, Luca Malcovati, Eva Hellström-Lindberg, Joop H. Jansen, Martin Dugas
2016 conf
HICSS
Jan C. Dageförde, Tobias Reischmann, Tim A. Majchrzak, Jan Ernsting
2016 conf
WEBIST (2)
Jan Ernsting, Christoph Rieger, Fabian Wrede, Tim A. Majchrzak
2016 conf
HICSS
Soren Evers, Jan Ernsting, Tim A. Majchrzak
2015 J jnl
Open J. Inf. Syst.
Tim A. Majchrzak, Jan Ernsting, Herbert Kuchen
2015 conf
HICSS
Sebastian Hanschke, Jan Ernsting, Herbert Kuchen
2015 conf
CAiSE Forum
Tim A. Majchrzak, Jan Ernsting, Herbert Kuchen
2015 conf
SIGSAND
Tim A. Majchrzak, Jan Ernsting
redb/extractors/decompiler/DecompileBinja.py
← Index redb/extractors/decompiler/DecompileBinja.py python
import hashlib
import inspect
import json
import logging
import os
import signal
import time
from datetime import datetime, timezone
from typing import Dict, Any, Optional
from pathlib import Path
import subprocess
import sys

from redb.extractors.enum import Tag
from redb.extractors.extractor import Extractor
import magic
import pefile
from elftools.elf.elffile import ELFFile

# Import our BinjaDecompiler (conditional)
from redb.extractors.decompiler.bninja.decompiler import BinaryNinjaDecompiler

class DecompileBinja(Extractor):
    def __init__(
        self,
        filepath,
        log,
        exporters=None,
        index_prefix=None,
        elastic_index=None,
        known_benign=False,
        known_malicious=False,
        filetype=None,
        decompile_modules=None,
    ):
        super().__init__(
            filepath,
            log,
            exporters,
            index_prefix,
            elastic_index,
            known_benign,
            known_malicious,
        )
        self.log.debug(inspect.currentframe().f_code.co_name)

        # Check if Binary Ninja is available
       # if not BINARYNINJA_AVAILABLE:
        #     self.log.error("Binary Ninja is not available in this container")
        #    raise ImportError(
        #        "Binary Ninja module not found - not available in feature extraction container"
        #    )
        self.analysis_results = None
        self.binja_decompiler = None
        self.filetype = filetype
        self.decompile_modules = decompile_modules or {"all"}
        self.goresym_data = None
        self.goresym_output_path = None

        # Convert TIMEOUT to integer with a default of 1200 seconds (20 minutes)
        try:
            self.BINJA_TIMEOUT = int(os.getenv("BINJA_TIMEOUT", "1200"))
        except ValueError:
            self.log.warning(
                "Invalid BINJA_TIMEOUT value, using default of 1200 seconds"
            )
            self.BINJA_TIMEOUT = 1200

        # Convert TIMEOUT to integer with a default of 1200 seconds (20 minutes)
        try:
            self.DECOMPILE_EXTRACTOR_TIMEOUT = int(
                os.getenv("DECOMPILE_EXTRACTOR_TIMEOUT", "2580")
            )
        except ValueError:
            self.log.warning(
                "Invalid DECOMPILE_EXTRACTOR_TIMEOUT value, using default of 2580 seconds"
            )
            self.DECOMPILE_EXTRACTOR_TIMEOUT = 2580

    def __enter__(self):
        return self

    def __exit__(self, exc_type, exc_val, exc_tb):
        self.cleanup_run()

    def calculate_md5(self, input_str):
        """Calculate MD5 hash of a string."""
        return hashlib.md5(input_str.encode("utf-8")).hexdigest()

    def is_dotnet(self):
        """Check if the binary is a .NET assembly.

        Returns:
            bool: True if the file is a .NET assembly, False otherwise
        """
        try:
            if self.filetype == "pebin":
                file_type = magic.from_buffer(self.binary)
                if ".Net" in file_type:
                    return True
                pe = pefile.PE(self.filepath)
                for entry in pe.OPTIONAL_HEADER.DATA_DIRECTORY:
                    # IMAGE_DIRECTORY_ENTRY_COM_DESCRIPTOR is typically 14
                    if (
                        entry.name == "IMAGE_DIRECTORY_ENTRY_COM_DESCRIPTOR"
                        and entry.Size > 0
                    ):
                        return True
                return False
            return False
        except AttributeError as e:
            self.log.error(
                f"AttributeError error dotnet file {self.hash.sha256} Full error : {e}"
            )
            return False

    def is_golang(self):
        """Check if the binary is a Go-compiled binary (heuristic).

        Supports PE and ELF binaries.
        """
        try:
            if self.filetype == "pebin":
                pe = pefile.PE(self.filepath)
                signatures = [b"Go build ID:", b"runtime.main", b"main.main"]

                for section in pe.sections:
                    data = section.get_data()
                    if any(sig in data for sig in signatures):
                        return True

                return False

            elif self.filetype == "elf":
                with open(self.filepath, "rb") as f:
                    elf = ELFFile(f)

                    # 1. Section-based checks
                    section_names = [sec.name for sec in elf.iter_sections()]
                    if any(
                        s in section_names
                        for s in (".note.go.buildid", ".gopclntab")
                    ):
                        return True

                    # 2. String scan in loadable sections
                    signatures = [
                        b"Go build ID:",
                        b"runtime.main",
                        b"runtime.goexit",
                        b"runtime.morestack",
                        b"main.main",
                    ]

                    for sec in elf.iter_sections():
                        if sec["sh_flags"] & 0x2:  # SHF_ALLOC
                            data = sec.data()
                            if any(sig in data for sig in signatures):
                                return True

                return False

            return False

        except Exception as e:
            self.log.error(
                f"Golang detection error {self.hash.sha256}: {e}"
            )
            return False

    def cleanup_run(self):
        """Clean up after analysis."""
        try:
            # BinaryNinjaDecompiler uses context manager pattern (__enter__/__exit__)
            # Cleanup happens automatically when exiting the 'with' block
            self.binja_decompiler = None

            # Clean up goresym temp file if it exists (keep in debug mode)
            if self.goresym_output_path and os.path.exists(self.goresym_output_path):
                if self.log.isEnabledFor(logging.DEBUG):
                    self.log.debug(f"Debug mode: keeping goresym output at {self.goresym_output_path}")
                else:
                    os.remove(self.goresym_output_path)
                    self.goresym_output_path = None

            # Force garbage collection
            import gc

            gc.collect()

        except Exception as e:
            self.log.error(f"Error in cleanup: {e}")

    def run_goresym(self, binary_path, output_json_path):
        """
            Run goresym on a Go binary and export its JSON output to a file.
            binary_path: path to the Go binary to analyze
            output_json_path: path where the JSON output will be saved
            """
        binary_path = str(Path(binary_path).resolve())
        output_json_path = str(Path(output_json_path).resolve())
        goresym_path = os.getenv("GORESYM_PATH", "GoReSym")

        try:
            # Example: goresym -t json /path/to/binary
            self.log.info("DEBUG: starting GoReSym")
            result = subprocess.run(
                [goresym_path, binary_path],
                stdout=subprocess.PIPE,
                stderr=subprocess.PIPE,
                text=True,
            )
        except FileNotFoundError:
            self.log.error("Error: 'goresym' not found in PATH. Make sure it is installed.")
            raise
        except subprocess.CalledProcessError as e:
            self.log.error("Error during goresym execution:")
            self.log.error(e.stderr)


        # Assuming goresym emits valid JSON to stdout.
        try:
            parsed = json.loads(result.stdout)
            # Store parsed JSON for later export to ClickHouse
            self.goresym_data = parsed
        except json.JSONDecodeError:
            # If it's not valid JSON, save the raw output instead.
            self.log.error("Warning: goresym output is not valid JSON; saving raw.")
            with open(output_json_path, "w", encoding="utf-8") as f:
                f.write(result.stdout)
            return

        # Save pretty-printed JSON for readability and debugging (used by BinaryNinja)
        with open(output_json_path, "w", encoding="utf-8") as f:
            json.dump(parsed, f, ensure_ascii=False, indent=2)
        self.goresym_output_path = output_json_path

        self.log.debug(f"goresym output saved to: {output_json_path}")

    def analyze_binary(self) -> Optional[Dict[str, Any]]:
        """Run Binary Ninja analysis and return results."""
        self.log.debug("Starting binary analysis")
        # if the binary is dotnet (only PE)
        if self.is_dotnet():
            self.log.debug("Skipping .NET binary - decompilation not supported")
            return None

        output_json_path = None
        ## if golang: run goresym
        try:
            if self.is_golang():
                output_json_path = "./goResym.json"
                self.run_goresym(self.filepath, output_json_path)
        except Exception as e:
            self.log.error(f"Error on GoReSym extraction: {e}")

        try:
            # Use BinaryNinjaDecompiler as a context manager to ensure proper setup/cleanup
            with BinaryNinjaDecompiler(
                filepath=self.filepath,
                timeout=self.BINJA_TIMEOUT,
                log=self.log,
                exporters=self.exporters,
                index_prefix=self.index_prefix,
                filetype=self.filetype,
                goresym=output_json_path,
                decompile_modules=self.decompile_modules,
            ) as decompiler:
                self.binja_decompiler = decompiler

                if decompiler.extract():
                    # Store results before context manager exits
                    results = decompiler.analysis_results
                    return results
                else:
                    self.log.error("BinaryNinjaDecompiler extraction failed")
                    return None

        except Exception as e:
            self.log.error(f"Error in Binary Ninja analysis: {e}")
            import traceback
            self.log.error(f"Traceback: {traceback.format_exc()}")
            return None

        finally:
            self.cleanup_run()

    def extract(self):
        """Extract and process all analysis results."""
        self.log.debug(inspect.currentframe().f_code.co_name)

        # Create a flag to track if extraction completed
        extraction_completed = False
        extraction_result = False
        extraction_error = None

        # Define the extraction process as a separate function
        def do_extraction():
            nonlocal extraction_completed, extraction_result, extraction_error
            try:
                results = self.analyze_binary()
                if not results:
                    extraction_result = False
                else:
                    self.analysis_results = results
                    # Add file hashes from parent Extractor class to analysis results
                    self.analysis_results["sha256"] = self.sha256
                    self.analysis_results["sha1"] = self.sha1
                    self.analysis_results["md5"] = self.md5
                    extraction_result = True
            except Exception as e:
                extraction_error = e
                extraction_result = False
            finally:
                extraction_completed = True

        # Run extraction directly with signal-based timeout (no thread overhead).
        # SIGALRM is delivered by the OS, so there's no GIL contention or polling.
        old_handler = signal.getsignal(signal.SIGALRM)
        def _timeout_handler(signum, frame):
            raise TimeoutError("Extraction timed out")

        signal.signal(signal.SIGALRM, _timeout_handler)
        signal.alarm(self.DECOMPILE_EXTRACTOR_TIMEOUT)
        try:
            do_extraction()
        except TimeoutError:
            self.log.error(
                f"Extraction timed out after {self.DECOMPILE_EXTRACTOR_TIMEOUT} seconds"
            )
            self.cleanup_run()
            return None
        finally:
            signal.alarm(0)
            signal.signal(signal.SIGALRM, old_handler)

        if extraction_error:
            self.log.error(f"Error in extraction: {extraction_error}")
            return None

        # Return the actual analysis results, not just a boolean
        return self.analysis_results if extraction_result else None

    def prepare_export_data(self, exporter_type: str) -> Any:
        """Prepare data for database export."""
        self.log.debug(inspect.currentframe().f_code.co_name)
        if not self.analysis_results:
            return None

        # # Delegate to the BinjaDecompiler for consistent export formatting
        # if self.binja_decompiler:
        #     return self.binja_decompiler.prepare_export_data(exporter_type)
        # else:
        #     self.log.error("BinjaDecompiler not available for export preparation")
        #     return None

        if exporter_type == "ClickHouseExporter":
            now = datetime.now(timezone.utc)

            def prepare_array_field(value, array_type):
                """Helper to prepare array fields with proper null handling"""
                if value is None:
                    return []
                return value

            # Add a helper function to handle empty strings
            def ensure_not_empty(value, default="UNKNOWN"):
                """Ensure a string value is not empty"""
                if value is None or value == "":
                    return default
                return value

            def prepare_register_usage_map(register_dict):
                """Convert register usage dict to Map format with tuples
                Input: {"rbx": {"reads": 3, "writes": 1}, ...}
                Output: {"rbx": (3, 1), ...}
                """
                if not register_dict:
                    return {}
                return {
                    reg: (info.get("reads", 0), info.get("writes", 0))
                    for reg, info in register_dict.items()
                }


            decompile_modules = getattr(self, "decompile_modules", {"all"})
            run_all = "all" in decompile_modules
            run_decompilation = run_all or "decompilation" in decompile_modules
            run_disassembly = run_all or "disassembly" in decompile_modules
            run_llil = run_all or "llil" in decompile_modules
            run_cfg = run_all or "cfg" in decompile_modules
            run_strings = run_all or "strings" in decompile_modules

            export = {"multi_table": True}

            # Decompilation tables
            if run_decompilation:
                export["decompiled_content"] = {
                    "table": "code_binja_decompiled_functions_content",
                    "data": [
                        [
                            f["decompiled_function_hash"],
                            f["decompiled_function"],
                            f["function_type"],
                            f.get("flattened_score"),
                            f.get("mba_score"),
                            now,
                        ]
                        for f in self.analysis_results["decompiled"]
                    ],
                    "column_names": [
                        "decompiled_function_hash",
                        "decompiled_function",
                        "function_type",
                        "flattened_score",
                        "mba_score",
                        "analysis_date",
                    ],
                    "column_type_names": [
                        "FixedString(64)",
                        "String",
                        "Enum8('USER'=1, 'LIBRARY'=2, 'THUNK'=3, 'EXTERNAL'=4, 'UNKNOWN'=5)",
                        "Nullable(Float64)",
                        "Nullable(Float64)",
                        "DateTime64(3, 'UTC')",
                    ],
                }
                export["decompiled_refs"] = {
                    "table": "code_binja_decompiled_functions_references",
                    "data": [
                        [
                            self.analysis_results["sha256"],
                            self.analysis_results["sha1"],
                            self.analysis_results["md5"],
                            f["decompiled_function_hash"],
                            f.get("disassembled_function_hash"),
                            f["decompiled_function_name"],
                            f["decompiled_function_prototype"],
                            f["decompiled_function_address"],
                            prepare_array_field(f.get("functions_caller"), "Array(String)"),
                            prepare_array_field(f.get("functions_call"), "Array(String)"),
                            now,
                        ]
                        for f in self.analysis_results["decompiled"]
                    ],
                    "column_names": [
                        "sha256",
                        "sha1",
                        "md5",
                        "decompiled_function_hash",
                        "disassembled_function_hash",
                        "decompiled_function_name",
                        "decompiled_function_prototype",
                        "decompiled_function_address",
                        "functions_caller",
                        "functions_call",
                        "analysis_date",
                    ],
                    "column_type_names": [
                        "FixedString(64)",
                        "FixedString(40)",
                        "FixedString(32)",
                        "FixedString(64)",
                        "Nullable(FixedString(64))",
                        "LowCardinality(String)",
                        "LowCardinality(String)",
                        "UInt64",
                        "Array(String)",
                        "Array(String)",
                        "DateTime64(3, 'UTC')",
                    ],
                }

            # Disassembly tables
            if run_disassembly:
                export["disassembled_content"] = {
                    "table": "code_binja_disassembled_functions_content",
                    "data": [
                        [
                            f["disassembled_function_hash"],
                            f.get("disassembled_function", ""),
                            f.get("disassembled_function_no_addresses", ""),
                            f.get("function_type", "UNKNOWN"),
                            f.get("instructions_count", 0),
                            prepare_array_field(
                                f.get("instructions_types"), "LowCardinality(String)"
                            ),
                            f.get("control_flow_count", 0),
                            prepare_array_field(
                                f.get("memory_access_pattern"), "LowCardinality(String)"
                            ),
                            prepare_array_field(
                                f.get("register_usage"), "LowCardinality(String)"
                            ),
                            f.get("data_references_count", 0),
                            f.get("max_block_size"),
                            f.get("num_calls"),
                            f.get("stack_size"),
                            now,
                        ]
                        for f in self.analysis_results["disassembled"]
                    ],
                    "column_names": [
                        "disassembled_function_hash",
                        "disassembled_function",
                        "disassembled_function_no_addresses",
                        "function_type",
                        "instructions_count",
                        "instructions_types",
                        "control_flow_count",
                        "memory_access_pattern",
                        "register_usage",
                        "data_references_count",
                        "max_block_size",
                        "num_calls",
                        "stack_size",
                        "analysis_date",
                    ],
                    "column_type_names": [
                        "FixedString(64)",
                        "String",
                        "String",
                        "Enum8('USER'=1, 'LIBRARY'=2, 'THUNK'=3, 'EXTERNAL'=4, 'UNKNOWN'=5)",
                        "UInt32",
                        "Array(LowCardinality(String))",
                        "UInt32",
                        "Array(LowCardinality(String))",
                        "Array(LowCardinality(String))",
                        "UInt32",
                        "Nullable(UInt32)",
                        "Nullable(UInt32)",
                        "Nullable(Int32)",
                        "DateTime64(3, 'UTC')",
                    ],
                }
                export["disassembled_refs"] = {
                    "table": "code_binja_disassembled_functions_references",
                    "data": [
                        [
                            self.analysis_results["sha256"],
                            self.analysis_results["sha1"],
                            self.analysis_results["md5"],
                            f["disassembled_function_hash"],
                            f.get("decompiled_function_hash"),
                            f["disassembled_function_name"],
                            f["disassembled_function_address"],
                            f.get("tlsh_disassembly"),
                            f.get("tlsh_llil"),
                            now,
                        ]
                        for f in self.analysis_results["disassembled"]
                    ],
                    "column_names": [
                        "sha256",
                        "sha1",
                        "md5",
                        "disassembled_function_hash",
                        "decompiled_function_hash",
                        "disassembled_function_name",
                        "disassembled_function_address",
                        "tlsh_disassembly",
                        "tlsh_llil",
                        "analysis_date",
                    ],
                    "column_type_names": [
                        "FixedString(64)",
                        "FixedString(40)",
                        "FixedString(32)",
                        "FixedString(64)",
                        "Nullable(FixedString(64))",
                        "LowCardinality(String)",
                        "UInt64",
                        "Nullable(FixedString(72))",
                        "Nullable(FixedString(72))",
                        "DateTime64(3, 'UTC')",
                    ],
                }
                # Function similarity metrics table (derived from disassembly data)
                # Lookup maps to join LLIL/MLIL features by disassembled_function_hash
                llil_by_hash = {
                    l.get("disassembled_function_hash"): l
                    for l in self.analysis_results.get("llil", [])
                    if l and l.get("disassembled_function_hash")
                }
                mlil_by_hash = {
                    m.get("disassembled_function_hash"): m
                    for m in self.analysis_results.get("mlil", [])
                    if m and m.get("disassembled_function_hash")
                }

                export["function_similarity_metrics"] = {
                    "table": "code_binja_function_similarity_metrics",
                    "data": [
                        [
                            f["disassembled_function_hash"],
                            f.get("cyclomatic_complexity"),
                            f.get("tlsh_disassembly"),
                            f.get("tlsh_llil"),
                            prepare_array_field(f.get("minhash"), "Array(UInt8)"),
                            (llil_by_hash.get(f["disassembled_function_hash"]) or {}).get("tlsh_llil"),
                            (llil_by_hash.get(f["disassembled_function_hash"]) or {}).get(
                                "tlsh_instruction_typed_llil"),
                            prepare_array_field(
                                (llil_by_hash.get(f["disassembled_function_hash"]) or {}).get("minhash_llil_skeleton"),
                                "Array(UInt8)",
                            ),
                            prepare_array_field(
                                (llil_by_hash.get(f["disassembled_function_hash"]) or {}).get("minhash_llil_typed"),
                                "Array(UInt8)",
                            ),
                            (mlil_by_hash.get(f["disassembled_function_hash"]) or {}).get("tlsh_mlil_skeleton"),
                            (mlil_by_hash.get(f["disassembled_function_hash"]) or {}).get("tlsh_mlil_typed"),
                            prepare_array_field(
                                (mlil_by_hash.get(f["disassembled_function_hash"]) or {}).get("minhash_mlil_skeleton"),
                                "Array(UInt8)",
                            ),
                            prepare_array_field(
                                (mlil_by_hash.get(f["disassembled_function_hash"]) or {}).get("minhash_mlil_typed"),
                                "Array(UInt8)",
                            ),
                            now,
                        ]
                        for f in self.analysis_results.get("disassembled", [])
                    ],
                    "column_names": [
                        "disassembled_function_hash",
                        "cyclomatic_complexity",
                        "tlsh_disassembly",
                        "tlsh_llil",
                        "minhash",
                        "tlsh_llil_new",
                        "tlsh_instruction_typed_llil",
                        "minhash_llil_skeleton",
                        "minhash_llil_typed",
                        "tlsh_mlil_skeleton",
                        "tlsh_mlil_typed",
                        "minhash_mlil_skeleton",
                        "minhash_mlil_typed",
                        "analysis_date",
                    ],
                    "column_type_names": [
                        "FixedString(64)",
                        "Nullable(UInt16)",
                        "Nullable(FixedString(72))",
                        "Nullable(FixedString(72))",
                        "Array(UInt8)",
                        # new
                        "Nullable(FixedString(72))",
                        "Nullable(FixedString(72))",
                        "Array(UInt8)",
                        "Array(UInt8)",
                        "Nullable(FixedString(72))",
                        "Nullable(FixedString(72))",
                        "Array(UInt8)",
                        "Array(UInt8)",
                        "DateTime64(3, 'UTC')",
                    ],
                }


            # LLIL tables
            if run_llil:
                export["llil_content"] = {
                    "table": "code_binja_llil_functions_content",
                    "data": [
                        [
                            f["sha256_llil"],
                            f["function_type"],
                            prepare_array_field(
                                f.get("instructions_types_llil"), "LowCardinality(String)"
                            ),
                            f.get("control_flow_count_llil", 0),
                            prepare_array_field(
                                f.get("memory_access_pattern_llil"), "LowCardinality(String)"
                            ),
                            prepare_register_usage_map(f.get("register_usage", {})),
                            f.get("total_reg_reads", 0),
                            f.get("total_reg_written", 0),
                            f.get("data_references_count", 0),
                            f.get("max_block_size"),
                            f.get("num_calls"),
                            f.get("stack_size"),
                            prepare_array_field(f.get("body_llil_vector"), "Array(Tuple(UInt32, Array(UInt16)))"),
                            now,
                        ]
                        for f in self.analysis_results.get("llil", [])
                    ],
                    "column_names": [
                        "llil_function_hash",
                        "function_type",
                        "instructions_types_llil",
                        "control_flow_count_llil",
                        "memory_access_pattern_llil",
                        "register_usage_llil",
                        "total_reg_reads",
                        "total_reg_written",
                        "data_references_count",
                        "max_block_size",
                        "num_calls",
                        "stack_size",
                        "body_llil_vector",
                        "analysis_date",
                    ],
                    "column_type_names": [
                        "FixedString(64)",
                        "Enum8('USER'=1, 'LIBRARY'=2, 'THUNK'=3, 'EXTERNAL'=4, 'UNKNOWN'=5)",
                        "Array(LowCardinality(String))",
                        "UInt32",
                        "Array(LowCardinality(String))",
                        "Map(LowCardinality(String), Tuple(UInt32, UInt32))",
                        "UInt32",
                        "UInt32",
                        "UInt32",
                        "Nullable(UInt32)",
                        "Nullable(UInt32)",
                        "Nullable(Int32)",
                        "Array(Tuple(UInt32, Array(UInt16)))",
                        "DateTime64(3, 'UTC')",
                    ],
                }
                export["llil_refs"] = {
                    "table": "code_binja_llil_functions_references",
                    "data": [
                        [
                            self.analysis_results["sha256"],
                            self.analysis_results["sha1"],
                            self.analysis_results["md5"],
                            f.get("sha256_llil"),
                            f.get("disassembled_function_hash"),
                            f.get("function_address"),
                            f.get("tlsh_disassembly"),
                            f.get("tlsh_llil"),
                            now,
                        ]
                        for f in self.analysis_results.get("llil", [])
                    ],
                    "column_names": [
                        "sha256",
                        "sha1",
                        "md5",
                        "llil_function_hash",
                        "disassembled_function_hash",
                        "function_address",
                        "tlsh_disassembly",
                        "tlsh_llil",
                        "analysis_date",
                    ],
                    "column_type_names": [
                        "FixedString(64)",
                        "FixedString(40)",
                        "FixedString(32)",
                        "Nullable(FixedString(64))",
                        "FixedString(64)",
                        "UInt64",
                        "Nullable(FixedString(72))",
                        "Nullable(FixedString(72))",
                        "DateTime64(3, 'UTC')",
                    ],
                }

            # Errors table (always include if per-function loop ran)
            if run_decompilation or run_disassembly or run_llil or run_cfg:
                export["function_analysis_errors"] = {
                    "table": "new_function_analysis_errors_binja",
                    "data": [
                        [
                            self.analysis_results["sha256"],
                            f["function_name"],
                            f["function_address"],
                            f.get("error_location", "unknown"),
                            f.get("error_message", ""),
                            f.get("error_details", ""),
                            f.get("error_type", "unknown"),
                            self.calculate_md5(
                                f"{f.get('error_message', '')}{f['function_name']}{f['function_address']}{f.get('error_location', 'unknown')}"
                            ),
                            "new",
                            now,
                        ]
                        for f in self.analysis_results.get("errors", [])
                    ],
                    "column_names": [
                        "sha256",
                        "function_name",
                        "function_address",
                        "error_location",
                        "error_message",
                        "error_details",
                        "error_type",
                        "error_hash",
                        "status",
                        "analysis_date",
                    ],
                    "column_type_names": [
                        "FixedString(64)",
                        "Nullable(String)",
                        "UInt64",
                        "LowCardinality(String)",
                        "Nullable(String)",
                        "Nullable(String)",
                        "Nullable(String)",
                        "FixedString(32)",
                        "Enum8('new'=1, 'investigating'=2, 'fixed'=3, 'wontfix'=4)",
                        "DateTime64(3, 'UTC')",
                    ],
                }

            # Strings table
            if run_strings:
                export["strings_raw"] = {
                    "table": "code_binja_strings_raw",
                    "data": [
                        [
                            self.analysis_results["sha256"],
                            s["string"],
                            s["string_raw"],
                            s["string_encoding"],
                            s["string_offset"],
                            s["string_length"],
                            s["string_raw_length"],
                            s["string_entropy"],
                        ]
                        for s in self.analysis_results.get("strings", [])
                    ],
                    "column_names": [
                        "sha256",
                        "string",
                        "string_raw",
                        "string_encoding",
                        "string_offset",
                        "string_length",
                        "string_raw_length",
                        "string_entropy",
                    ],
                    "column_type_names": [
                        "FixedString(64)",
                        "String",
                        "String",
                        "LowCardinality(String)",
                        "UInt64",
                        "UInt32",
                        "UInt32",
                        "Float32",
                    ],
                }

            # CFG function-level features table
            if run_cfg:
                export["cfg_functions"] = {
                    "table": "code_binja_cfg_functions",
                    "data": [
                        [
                            cfg.get("disassembled_function_hash"),
                            cfg["cfg_topology_hash"],
                            cfg["block_count"],
                            cfg["edge_count"],
                            cfg.get("llil_total_operations", 0),
                            cfg.get("call_count", 0),
                            cfg["cyclomatic_complexity"],
                            cfg.get("loop_count", 0),
                            cfg.get("max_depth", 0),
                            cfg.get("max_fan_out", 0),
                            cfg.get("md_index_topdown", 0),
                            cfg.get("md_index_bottomup", 0),
                            cfg.get("prime_product_llil", 0),
                            cfg.get("cfg_feature_tlsh"),
                            cfg.get("wl_minhash", []),
                            cfg.get("bb_features", []),
                            cfg.get("cfg_adjacency", []),
                            now,
                        ]
                        for cfg in self.analysis_results.get("cfg", [])
                        if cfg is not None
                    ],
                    "column_names": [
                        "disassembled_function_hash",
                        "cfg_topology_hash",
                        "block_count",
                        "edge_count",
                        "llil_total_operations",
                        "call_count",
                        "cyclomatic_complexity",
                        "loop_count",
                        "max_depth",
                        "max_fan_out",
                        "md_index_topdown",
                        "md_index_bottomup",
                        "prime_product_llil",
                        "cfg_feature_tlsh",
                        "wl_minhash",
                        "bb_features",
                        "cfg_adjacency",
                        "analysis_date",
                    ],
                    "column_type_names": [
                        "FixedString(64)",
                        "FixedString(16)",
                        "UInt16",
                        "UInt16",
                        "UInt32",
                        "UInt16",
                        "UInt16",
                        "UInt8",
                        "UInt16",
                        "UInt8",
                        "UInt64",
                        "UInt64",
                        "UInt64",
                        "Nullable(FixedString(72))",
                        "Array(UInt8)",
                        "Array(Array(UInt16))",
                        "Array(UInt32)",
                        "DateTime64(3, 'UTC')",
                    ],
                }

            # GoReSym metadata table (only if goresym data exists)
            if self.goresym_data:
                export["golang_metadata"] = {
                    "table": "redb_golang_metadata",
                    "data": [
                        [
                            self.analysis_results["sha256"],
                            json.dumps(self.goresym_data),
                            now,
                        ]
                    ],
                    "column_names": [
                        "sha256",
                        "goresym",
                        "analysis_date",
                    ],
                    "column_type_names": [
                        "FixedString(64)",
                        "JSON",
                        "DateTime64(3, 'UTC')",
                    ],
                }

            return export

    def tag(self) -> str:
        """Return the tag for this extractor."""
        return Tag.DECOMPILED.value

    def get_clickhouse_table(self) -> str:
        """Not used directly as we're handling multiple tables."""
        pass


if __name__ == "__main__":
    # Setup basic logging
    import logging
    import time

    logging.basicConfig(level=logging.INFO)
    logger = logging.getLogger("DecompileBinja")

    # Parse command line arguments
    import argparse

    parser = argparse.ArgumentParser(description="Binary Ninja Decompiler Wrapper")
    parser.add_argument("filepath", help="Path to the binary file to analyze")
    parser.add_argument(
        "--output", "-o", help="Output JSON file path (default: stdout)"
    )
    parser.add_argument(
        "--timeout",
        "-t",
        type=int,
        default=1200,
        help="Analysis timeout in seconds (default: 1200)",
    )
    args = parser.parse_args()
    start = time.perf_counter()
    # Create and run the extractor
    with DecompileBinja(args.filepath, logger) as extractor:
        success = extractor.extract()
        end = time.perf_counter()
        if not success:
            logger.error("Analysis failed")
            exit(1)

        # Output results
        if args.output:
            with open(args.output, "w") as f:
                json.dump(extractor.analysis_results, f)
            logger.info(f"Results written to {args.output}")
        else:
            print((extractor.analysis_results))
            with open("diff", "w") as f:
                f.write(str(f"{end - start:.3f} seconds"))