Jan Aerts

48 papers B 1C 1Misc 1Journal 35Unranked 10
YearRankTypeTitle / Venue / Authors
2025 J jnl
FLASC: a flare-sensitive clustering algorithm.
PeerJ Comput. Sci.
Daniël M. Bot, Jannes Peeters, Jori Liesenborgs, Jan Aerts
2025 J jnl
Persistent Multiscale Density-based Clustering.
CoRR
Daniël Bot, Leland McInnes, Jan Aerts
2025 J jnl
Synthetic plasma pool cohort correction for affinity-based proteomics datasets allows multiple study comparison.
Briefings Bioinform.
Dries Heylen, Murih Pusparum, Jurgis Kuliesius, Jim Wilson, Young-Chan Park, Jacek Jamiolkowski, Valentino D'onofrio, Dirk Valkenborg, Jan Aerts, Gökhan Ertaylan, Jef Hooyberghs
2024 J jnl
Challenges and Opportunities in Data Visualization Education: A Call to Action.
IEEE Trans. Vis. Comput. Graph.
Benjamin Bach, Mandy Keck, Fateme Rajabiyazdi, Tatiana Losev, Isabel Meirelles, Jason Dykes, Robert S. Laramee, Mashael AlKadi, Christina Stoiber, Samuel Huron, Charles Perin, Luiz Morais, Wolfgang Aigner, Doris Kosminsky, Magdalena Boucher, Søren Knudsen, Areti Manataki, Jan Aerts, Uta Hinrichs, Jonathan C. Roberts, Sheelagh Carpendale
2024 J jnl
Lens functions for exploring UMAP Projections with Domain Knowledge.
CoRR
Daniël M. Bot, Jan Aerts
2024 — conf
Manifold Modelling with Minimum Spanning Trees.
EuroVis (Posters)
Daniël M. Bot, Peiyang Huo, Alessio Arleo, Fernando V. Paulovich, Jan Aerts
2024 J jnl
Snowflake: visualizing microbiome abundance tables as multivariate bipartite graphs.
Frontiers Bioinform.
Jannes Peeters, Daniël M. Bot, Gustavo Alberto Rovelo Ruiz, Jan Aerts
2023 J jnl
Challenges and Opportunities in Data Visualization Education: A Call to Action.
CoRR
Benjamin Bach, Mandy Keck, Fateme Rajabiyazdi, Tatiana Losev, Isabel Meirelles, Jason Dykes, Robert S. Laramee, Mashael AlKadi, Christina Stoiber, Samuel Huron, Charles Perin, Luiz Morais, Wolfgang Aigner, Doris Kosminsky, Magdalena Boucher, Søren Knudsen, Areti Manataki, Jan Aerts, Uta Hinrichs, Jonathan C. Roberts, Sheelagh Carpendale
2023 J jnl
FLASC: A Flare-Sensitive Clustering Algorithm: Extending HDBSCAN* for Detecting Branches in Clusters.
CoRR
Daniël M. Bot, Jannes Peeters, Jori Liesenborgs, Jan Aerts
2023 — conf
The Challenge of Branch-Aware Data Manifold Exploration.
EuroVis (Posters)
Daniël M. Bot, Jannes Peeters, Jan Aerts
2022 J jnl
Designing a Data Visualisation for Interdisciplinary Scientists. How to Transparently Convey Data Frictions?
Comput. Support. Cooperative Work.
Georgia Panagiotidou, Jeroen Poblome, Jan Aerts, Andrew Vande Moere
2022 — conf
MOBS - Multi-Omics Brush for Subgraph Visualisation.
EuroVis (Posters)
Dries Heylen, Jannes Peeters, Gökhan Ertaylan, Jef Hooyberghs, Jan Aerts
2021 J jnl
A visual analytic approach for the identification of ICU patient subpopulations using ICD diagnostic codes.
PeerJ Comput. Sci.
Daniel Alcaide, Jan Aerts
2021 J jnl
Exploring the Microbiome Analysis and Visualization Landscape.
Frontiers Bioinform.
Jannes Peeters, Olivier Thas, Ziv Shkedy, Leyla Kodalci, Connie Musisi, Olajumoke Evangelina Owokotomo, Aleksandra Dyczko, Ibrahim Hamad, Jaco Vangronsveld, Markus Kleinewietfeld, Sofie Thijs, Jan Aerts
2021 J jnl
Remote Instruction for Data Visualization Design - A Report From the Trenches.
IEEE Computer Graphics and Applications
Jan Aerts, Jannes Peeters, Jelmer Bot, Danai Kafetzaki, Houda Lamqaddam
2021 J jnl
Spanning Trees as Approximation of Data Structures.
IEEE Trans. Vis. Comput. Graph.
Daniel Alcaide, Jan Aerts
2021 — conf
TIEVis: a Visual Analytics Dashboard for Temporal Information Extracted from Clinical Reports.
IUI Companion
Robin De Croon, Artuur Leeuwenberg, Jan Aerts, Marie-Francine Moens, Vero Vanden Abeele, Katrien Verbert
2019 J jnl
GRNBoost2 and Arboreto: efficient and scalable inference of gene regulatory networks.
Bioinform.
Thomas Moerman, Sara Aibar Santos, Carmen Bravo González-Blas, Jaak Simm, Yves Moreau, Jan Aerts, Stein Aerts
2019 J jnl
Improving the Projection of Global Structures in Data through Spanning Trees.
CoRR
Daniel Alcaide, Jan Aerts
2018 J jnl
MCLEAN: Multilevel Clustering Exploration As Network.
PeerJ Comput. Sci.
Daniel Alcaide, Jan Aerts
2018 — conf
Multilevel Visual Clustering Exploration for Incomplete Time-Series in Water Samples.
VAST
Daniel Alcaide, Jan Aerts
2018 Misc conf
NAHR: a visual representation of social networks as support for art history research.
NordiCHI
Houda Lamqaddam, Jan Aerts, Koenraad Brosens, Katrien Verbert
2018 J jnl
Visualization of Biological Data - Crossroads (Dagstuhl Seminar 18161).
Dagstuhl Reports
Jan Aerts, Nils Gehlenborg, Georgeta Elisabeta Marai, Kay Katja Nieselt
2017 — conf
DaaG: Visual Analytics Clustering Using Network Representation.
EuroVis (Posters)
Daniel Alcaide, Jan Aerts
2017 — conf
Interactive Visualization of Massive Location Data using Multi-Scale Trajectories.
EuroVis (Posters)
Thomas De Bodt, Bart Adams, Jan Aerts
2017 J jnl
MCLEAN: Multilevel Clustering Exploration As Network.
PeerJ Prepr.
Daniel Alcaide, Jan Aerts
2016 J jnl
Candidate gene prioritization with Endeavour.
Nucleic Acids Res.
Léon-Charles Tranchevent, Amin Ardeshirdavani, Sarah ElShal, Daniel Alcaide, Jan Aerts, Didier Auboeuf, Yves Moreau
2016 — conf
InVITe - Towards Intuitive Visualization of Iterations over Text.
EuroVis (Posters)
Houda Lamqaddam, Jan Aerts
2015 — conf
Card Sorting Techniques for Domain Characterization in Problem-driven Visualization Research.
EuroVis (Short Papers)
Ryo Sakai, Jan Aerts
2015 J jnl
Highlights from the 5th Symposium on Biological Data Visualization: Part 1.
BMC Bioinform.
Jan Aerts, G. Elisabeta Marai, Kay Nieselt, Cydney B. Nielsen, Marc Streit, Daniel Weiskopf
2014 B conf
A Self-Tuning Genetic Algorithm with Applications in Biomarker Discovery.
CBMS
Dusan Popovic, Charalampos N. Moschopoulos, Ryo Sakai, Alejandro Sifrim, Jan Aerts, Yves Moreau, Bart De Moor
2014 — conf
A three step process to design visualisations for GeoTemporal analysis (VAST 2014 Mini Challenge 2).
IEEE VAST
Alvin Chua, Ryo Sakai, Jan Aerts, Andrew Vande Moere
2014 J jnl
BioHackathon series in 2011 and 2012: penetration of ontology and linked data in life science domains.
J. Biomed. Semant.
Toshiaki Katayama, Mark D. Wilkinson, Kiyoko F. Aoki-Kinoshita, Shuichi Kawashima, Yasunori Yamamoto, Atsuko Yamaguchi, Shinobu Okamoto, Shin Kawano, Jin-Dong Kim, Yue Wang, Hongyan Wu, Yoshinobu Kano, Hiromasa Ono, Hidemasa Bono, Simon Kocbek, Jan Aerts, Yukie Akune, Erick Antezana, Kazuharu Arakawa, Bruno Aranda, Joachim Baran, Jerven T. Bolleman, Raoul Jean Pierre Bonnal, Pier Luigi Buttigieg, Matthew P. Campbell, Yi-An Chen, Hirokazu Chiba, Peter J. A. Cock, Kevin Bretonnel Cohen, Alexandru Constantin
2013 J jnl
Pipit: visualizing functional impacts of structural variations.
Bioinform.
Ryo Sakai, Matthieu Moisse, Joke Reumers, Jan Aerts
2013 J jnl
TrioVis: a visualization approach for filtering genomic variants of parent-child trios.
Bioinform.
Ryo Sakai, Alejandro Sifrim, Andrew Vande Moere, Jan Aerts
2013 J jnl
Unraveling genomic variation from next generation sequencing data.
BioData Min.
Georgios A. Pavlopoulos, Anastasis Oulas, Ernesto Iacucci, Alejandro Sifrim, Yves Moreau, Reinhard Schneider, Jan Aerts, Ioannis Iliopoulos
2012 J jnl
An eQTL biological data visualization challenge and approaches from the visualization community.
BMC Bioinform.
Christopher W. Bartlett, Soo Yeon Cheong, Liping Hou, Jesse Paquette, Pek Yee Lum, Günter Jäger, Florian Battke, Corinna Vehlow, Julian Heinrich, Kay Nieselt, Ryo Sakai, Jan Aerts, William C. Ray
2012 J jnl
Arena3D: visualizing time-driven phenotypic differences in biological systems.
BMC Bioinform.
Maria Secrier, Georgios A. Pavlopoulos, Jan Aerts, Reinhard Schneider
2012 J jnl
Biogem: an effective tool-based approach for scaling up open source software development in bioinformatics.
Bioinform.
Raoul Jean Pierre Bonnal, Jan Aerts, George Githinji, Naohisa Goto, Daniel MacLean, Chase A. Miller, Hiroyuki Mishima, Massimiliano Pagani, Ricardo Ramirez-Gonzalez, Geert Smant, Francesco Strozzi, Rob Syme, Rutger A. Vos, Trevor J. Wennblom, Ben J. Woodcroft, Toshiaki Katayama, Pjotr Prins
2012 J jnl
Changing computational research. The challenges ahead.
Source Code Biol. Medicine
Cameron Neylon, Jan Aerts, C. Titus Brown, Simon J. Coles, Les Hatton, Daniel Lemire, K. Jarrod Millman, Peter Murray-Rust, Fernando Pérez, Neil F. W. Saunders, Nigam Shah, Arfon M. Smith, Gaël Varoquaux, Egon L. Willighagen
2012 J jnl
The Ruby UCSC API: accessing the UCSC genome database using Ruby.
BMC Bioinform.
Hiroyuki Mishima, Jan Aerts, Toshiaki Katayama, Raoul Jean Pierre Bonnal, Koh-ichiro Yoshiura
2012 C conf
Visualizing high dimensional datasets using parallel coordinates: Application to gene prioritization.
BIBE
Thomas Boogaerts, Léon-Charles Tranchevent, Georgios A. Pavlopoulos, Jan Aerts, Joos Vandewalle
2011 J jnl
A Ruby API to query the Ensembl database for genomic features.
Bioinform.
Francesco Strozzi, Jan Aerts
2011 J jnl
The 2nd DBCLS BioHackathon: interoperable bioinformatics Web services for integrated applications.
J. Biomed. Semant.
Toshiaki Katayama, Mark D. Wilkinson, Rutger A. Vos, Takeshi Kawashima, Shuichi Kawashima, Mitsuteru Nakao, Yasunori Yamamoto, Hong-Woo Chun, Atsuko Yamaguchi, Shin Kawano, Jan Aerts, Kiyoko F. Aoki-Kinoshita, Kazuharu Arakawa, Bruno Aranda, Raoul Jean Pierre Bonnal, José María Fernández, Takatomo Fujisawa, Paul M. K. Gordon, Naohisa Goto, Syed Haider, Todd W. Harris, Takashi Hatakeyama, Isaac Ho, Masumi Itoh, Arek Kasprzyk, Nobuhiro Kido, Young-Joo Kim, Akira R. Kinjo, Fumikazu Konishi, Yulia Kovarskaya, Gregory Von Kuster, Alberto Labarga, Vachiranee Limviphuvadh, E. Luke McCarthy, Yasukazu Nakamura, Yunsun Nam, Kozo Nishida, Kunihiro Nishimura, Tatsuya Nishizawa, Soichi Ogishima, Tom Oinn, Shinobu Okamoto, Shujiro Okuda, Keiichiro Ono, Kazuki Oshita, Keun-Joon Park, Nicholas H. Putnam, Martin Senger, Jessica Severin, Yasumasa Shigemoto, Hideaki Sugawara, James Taylor, Oswaldo Trelles, Chisato Yamasaki, Riu Yamashita, Noriyuki Satoh, Toshihisa Takagi
2011 J jnl
Using graph theory to analyze biological networks.
BioData Min.
Georgios A. Pavlopoulos, Maria Secrier, Charalampos N. Moschopoulos, Theodoros G. Soldatos, Sophia Kossida, Jan Aerts, Reinhard Schneider, Pantelis G. Bagos
2010 J jnl
BioRuby: bioinformatics software for the Ruby programming language.
Bioinform.
Naohisa Goto, Pjotr Prins, Mitsuteru Nakao, Raoul Jean Pierre Bonnal, Jan Aerts, Toshiaki Katayama
2010 J jnl
The DBCLS BioHackathon: standardization and interoperability for bioinformatics web services and workflows.
J. Biomed. Semant.
Toshiaki Katayama, Kazuharu Arakawa, Mitsuteru Nakao, Keiichiro Ono, Kiyoko F. Aoki-Kinoshita, Yasunori Yamamoto, Atsuko Yamaguchi, Shuichi Kawashima, Hong-Woo Chun, Jan Aerts, Bruno Aranda, Lord H. Barboza, Raoul Jean Pierre Bonnal, Richard M. Bruskiewich, Jan Christian Bryne, José María Fernández, Akira Funahashi, Paul M. K. Gordon, Naohisa Goto, Andreas Groscurth, Alex Gutteridge, Richard C. G. Holland, Yoshinobu Kano, Edward A. Kawas, Arnaud Kerhornou, Eri Kibukawa, Akira R. Kinjo, Michael Kuhn, Hilmar Lapp, Heikki Lehväslaiho, Hiroyuki Nakamura, Yasukazu Nakamura, Tatsuya Nishizawa, Chikashi Nobata, Tamotsu Noguchi, Thomas M. Oinn, Shinobu Okamoto, Stuart Owen, Evangelos Pafilis, Matthew R. Pocock, Pjotr Prins, René Ranzinger, Florian Reisinger, Lukasz Salwínski, Mark J. Schreiber, Martin Senger, Yasumasa Shigemoto, Daron M. Standley, Hideaki Sugawara, Toshiyuki Tashiro, Oswaldo Trelles, Rutger A. Vos, Mark D. Wilkinson, William S. York, Christian M. Zmasek, Kiyoshi Asai, Toshihisa Takagi
2009 J jnl
An introduction to scripting in Ruby for biologists.
BMC Bioinform.
Jan Aerts, Andy Law