James V. Burke

66 papers Journal 61Unranked 5
YearRankTypeTitle / Venue / Authors
2024 J jnl
J. Comput. Graph. Stat.
Aleksei Sholokhov, James V. Burke, Damian F. Santomauro, Peng Zheng, Aleksandr Y. Aravkin
2021 J jnl
Math. Oper. Res.
James V. Burke, Tim Hoheisel, Quang V. Nguyen
2021 J jnl
IEEE Trans. Inf. Theory
Aleksandr Y. Aravkin, James V. Burke, Daiwei He
2020 J jnl
SIAM J. Optim.
James V. Burke, Frank E. Curtis, Hao Wang, Jiashan Wang
2020 J jnl
Math. Oper. Res.
James V. Burke, Abraham Engle
2020 J jnl
Math. Program.
James V. Burke, Xiaojun Chen, Hailin Sun
2019 J jnl
Autom.
Jonathan Jonker, Aleksandr Y. Aravkin, James V. Burke, Gianluigi Pillonetto, Sarah E. Webster
2019 J jnl
Math. Program.
Aleksandr Y. Aravkin, James V. Burke, Dmitriy Drusvyatskiy, Michael P. Friedlander, Scott Roy
2019 J jnl
CoRR
Aleksandr Y. Aravkin, James V. Burke, Daiwei He
2019 conf
Robotics: Science and Systems
Jonathan Jonker, Aleksandr Y. Aravkin, James V. Burke, Gianluigi Pillonetto, Sarah E. Webster
2019 J jnl
SIAM J. Optim.
James V. Burke, Yuan Gao, Tim Hoheisel
2018 J jnl
SIAM J. Optim.
James V. Burke, Yuan Gao, Tim Hoheisel
2018 J jnl
SIAM J. Optim.
Aleksandr Y. Aravkin, James V. Burke, Dmitriy Drusvyatskiy, Michael P. Friedlander, Kellie J. MacPhee
2018 J jnl
SIAM J. Sci. Comput.
Aleksandr Y. Aravkin, James V. Burke, Gianluigi Pillonetto
2018 J jnl
Math. Program.
James V. Burke, Julia Eaton
2017 J jnl
CoRR
James V. Burke, Yuan Gao, Tim Hoheisel
2017 J jnl
Autom.
Aleksandr Y. Aravkin, James V. Burke, Lennart Ljung, Aurélie C. Lozano, Gianluigi Pillonetto
2016 J jnl
CoRR
Aleksandr Y. Aravkin, James V. Burke, Dmitriy Drusvyatskiy, Michael P. Friedlander, Scott Roy
2015 J jnl
SIAM J. Optim.
James V. Burke, Frank E. Curtis, Hao Wang, Jiashan Wang
2015 J jnl
SIAM J. Optim.
James V. Burke, Tim Hoheisel
2015 J jnl
IEEE Trans. Neural Networks Learn. Syst.
Aleksandr Y. Aravkin, Bradley M. Bell, James V. Burke, Gianluigi Pillonetto
2014 J jnl
SIAM J. Optim.
James V. Burke, Frank E. Curtis, Hao Wang
2014 J jnl
J. Mach. Learn. Res.
Aleksandr Y. Aravkin, James V. Burke, Alessandro Chiuso, Gianluigi Pillonetto
2014 J jnl
SIAM J. Control. Optim.
Aleksandr Y. Aravkin, James V. Burke, Gianluigi Pillonetto
2014 conf
CDC
Aleksandr Y. Aravkin, James V. Burke
2013 J jnl
SIAM J. Optim.
James V. Burke, Tim Hoheisel
2013 conf
CDC
Aleksandr Y. Aravkin, James V. Burke, Gianluigi Pillonetto
2013 J jnl
J. Mach. Learn. Res.
Aleksandr Y. Aravkin, James V. Burke, Gianluigi Pillonetto
2013 J jnl
CoRR
Aleksandr Y. Aravkin, Bradley M. Bell, James V. Burke, Gianluigi Pillonetto
2013 J jnl
SIAM J. Optim.
Aleksandr Y. Aravkin, James V. Burke, Michael P. Friedlander
2012 conf
CDC
Aleksandr Y. Aravkin, James V. Burke, Gianluigi Pillonetto
2011 J jnl
IEEE Trans. Autom. Control.
Aleksandr Y. Aravkin, Bradley M. Bell, James V. Burke, Gianluigi Pillonetto
2011 conf
CDC/ECC
Aleksandr Y. Aravkin, James V. Burke, Alessandro Chiuso, Gianluigi Pillonetto
2009 J jnl
Autom.
Bradley M. Bell, James V. Burke, Gianluigi Pillonetto
2009 J jnl
Math. Program.
James V. Burke, Sien Deng
2007 J jnl
SIAM J. Matrix Anal. Appl.
James V. Burke, Adrian S. Lewis, Michael L. Overton
2007 J jnl
Numerische Mathematik
James V. Burke, Adrian S. Lewis, Michael L. Overton
2006 J jnl
IEEE Trans. Autom. Control.
James V. Burke, Didier Henrion, Adrian S. Lewis, Michael L. Overton
2005 J jnl
SIAM J. Optim.
James V. Burke, Adrian S. Lewis, Michael L. Overton
2005 J jnl
Math. Program.
James V. Burke, Adrian S. Lewis, Michael L. Overton
2005 J jnl
Math. Program.
James V. Burke, Sien Deng
2004 J jnl
SIAM J. Matrix Anal. Appl.
James V. Burke, Adrian S. Lewis, Michael L. Overton
2004 J jnl
J. Glob. Optim.
James V. Burke, Adrian S. Lewis, Michael L. Overton
2003 J jnl
SIAM J. Matrix Anal. Appl.
James V. Burke, Adrian S. Lewis, Michael L. Overton
2003 J jnl
SIAM J. Control. Optim.
James V. Burke, D. Russell Luke
2002 J jnl
Math. Oper. Res.
James V. Burke, Adrian S. Lewis, Michael L. Overton
2002 J jnl
SIAM Rev.
D. Russell Luke, James V. Burke, Richard G. Lyon
2001 J jnl
Found. Comput. Math.
James V. Burke, Adrian S. Lewis, Michael L. Overton
2001 J jnl
SIAM J. Control. Optim.
James V. Burke, Michael L. Overton
2001 J jnl
Math. Program.
James V. Burke, Michael L. Overton
2000 J jnl
Math. Program.
James V. Burke, Song Xu
2000 J jnl
Math. Program.
James V. Burke, Maijian Qian
1999 J jnl
Math. Program.
Song Xu, James V. Burke
1998 J jnl
Math. Oper. Res.
James V. Burke, Song Xu
1997 J jnl
SIAM J. Matrix Anal. Appl.
Julio Moro, James V. Burke, Michael L. Overton
1996 J jnl
SIAM J. Optim.
James V. Burke, Paul Tseng
1995 J jnl
Math. Program.
James V. Burke, Michael C. Ferris
1994 J jnl
SIAM J. Optim.
James V. Burke, Jorge J. Moré
1992 J jnl
SIAM J. Optim.
James V. Burke
1992 J jnl
Math. Program.
James V. Burke, R. A. Poliquin
1991 J jnl
Oper. Res. Lett.
James V. Burke, Michael C. Ferris
1990 J jnl
Math. Program.
James V. Burke, Jorge J. Moré, Gerardo Toraldo
1989 J jnl
Math. Program.
James V. Burke, Shih-Ping Han
1987 J jnl
Math. Program.
James V. Burke
1986 J jnl
Math. Oper. Res.
James V. Burke, S.-P. Han
1985 J jnl
Math. Program.
James V. Burke
tests/conftest.py
← Index tests/conftest.py python
"""
Pytest configuration and shared fixtures for REDB unit tests.
"""
import os
import sys
import pytest
import logging
import tempfile
import hashlib
from unittest.mock import Mock, MagicMock, patch
from pathlib import Path

# Add the project root to the path
sys.path.insert(0, str(Path(__file__).parent.parent))

# Test files directory
TEST_FILES_DIR = Path(__file__).parent.parent / "test_files"


# ============================================================================
# Logger Fixtures
# ============================================================================

@pytest.fixture
def mock_logger():
    """Create a mock logger for testing."""
    logger = Mock()
    logger.debug = Mock()
    logger.info = Mock()
    logger.warning = Mock()
    logger.error = Mock()
    return logger


@pytest.fixture
def real_logger():
    """Create a real logger for testing with debug output."""
    logger = logging.getLogger("test_logger")
    logger.setLevel(logging.DEBUG)
    if not logger.handlers:
        handler = logging.StreamHandler()
        handler.setLevel(logging.DEBUG)
        formatter = logging.Formatter('%(levelname)s - %(message)s')
        handler.setFormatter(formatter)
        logger.addHandler(handler)
    return logger


# ============================================================================
# Test Binary Files Fixtures
# ============================================================================

@pytest.fixture
def elf_binary_path():
    """Path to the ELF test binary."""
    path = TEST_FILES_DIR / "hello"
    if not path.exists():
        pytest.skip(f"Test file not found: {path}")
    return str(path)


@pytest.fixture
def elf_advanced_binary_path():
    """Path to the advanced ELF test binary."""
    path = TEST_FILES_DIR / "hello_advanced"
    if not path.exists():
        pytest.skip(f"Test file not found: {path}")
    return str(path)


@pytest.fixture
def pe_binary_path():
    """Path to the PE test binary (.NET PE)."""
    path = TEST_FILES_DIR / "d8637bdbcfc9112fcb1f0167b398e771"
    if not path.exists():
        pytest.skip(f"Test file not found: {path}")
    return str(path)


@pytest.fixture
def elf_binary_content(elf_binary_path):
    """Read the ELF test binary content."""
    with open(elf_binary_path, "rb") as f:
        return f.read()


@pytest.fixture
def pe_binary_content(pe_binary_path):
    """Read the PE test binary content."""
    with open(pe_binary_path, "rb") as f:
        return f.read()


# ============================================================================
# Temporary Files Fixtures
# ============================================================================

@pytest.fixture
def temp_binary_file():
    """Create a temporary binary file for testing."""
    with tempfile.NamedTemporaryFile(delete=False, suffix=".bin") as f:
        # Write some test data
        f.write(b"\x7fELF" + b"\x00" * 100 + b"test data")
        temp_path = f.name

    yield temp_path

    # Cleanup
    if os.path.exists(temp_path):
        os.unlink(temp_path)


@pytest.fixture
def temp_text_file():
    """Create a temporary text file for testing."""
    with tempfile.NamedTemporaryFile(delete=False, suffix=".txt", mode="w") as f:
        f.write("This is a test file with some text content.")
        temp_path = f.name

    yield temp_path

    # Cleanup
    if os.path.exists(temp_path):
        os.unlink(temp_path)


@pytest.fixture
def temp_pe_like_file():
    """Create a temporary file with PE-like header for testing."""
    with tempfile.NamedTemporaryFile(delete=False, suffix=".exe") as f:
        # MZ header
        f.write(b"MZ" + b"\x00" * 58)
        # e_lfanew pointing to PE header at offset 64
        f.write(b"\x40\x00\x00\x00")
        # PE signature at offset 64
        f.write(b"PE\x00\x00")
        # Minimal COFF header (20 bytes)
        f.write(b"\x4c\x01")  # Machine (i386)
        f.write(b"\x01\x00")  # NumberOfSections
        f.write(b"\x00" * 16)  # Rest of COFF header
        temp_path = f.name

    yield temp_path

    # Cleanup
    if os.path.exists(temp_path):
        os.unlink(temp_path)


# ============================================================================
# Mock Exporter Fixtures
# ============================================================================

@pytest.fixture
def mock_print_exporter(mock_logger):
    """Create a mock PrintExporter."""
    from redb.extractors.database_exporters import PrintExporter
    exporter = PrintExporter(mock_logger, "test_index")
    return exporter


@pytest.fixture
def mock_elasticsearch_exporter(mock_logger):
    """Create a mock ElasticsearchExporter with mocked client."""
    with patch('redb.settings.get_elasticsearch_client') as mock_client:
        mock_client.return_value = Mock()
        from redb.extractors.database_exporters import ElasticsearchExporter
        exporter = ElasticsearchExporter(mock_logger, "test_index")
        return exporter


@pytest.fixture
def mock_clickhouse_exporter(mock_logger):
    """Create a mock ClickHouseExporter with mocked client."""
    with patch('redb.settings.create_clickhouse_client') as mock_client:
        mock_client.return_value = Mock()
        from redb.extractors.database_exporters import ClickHouseExporter
        exporter = ClickHouseExporter(mock_logger, "test_index", client=Mock())
        return exporter


# ============================================================================
# Mock Settings Fixtures
# ============================================================================

@pytest.fixture
def mock_settings():
    """Mock the redb.settings module."""
    with patch.multiple(
        'redb.settings',
        ELASTIC_BINARIES_COLLECTION="test_collection",
        get_elasticsearch_client=Mock(return_value=Mock()),
        create_clickhouse_client=Mock(return_value=Mock()),
    ):
        yield


# ============================================================================
# Hash Fixtures
# ============================================================================

@pytest.fixture
def known_hashes(elf_binary_content):
    """Compute known hashes for the ELF test binary."""
    return {
        'md5': hashlib.md5(elf_binary_content).hexdigest(),
        'sha1': hashlib.sha1(elf_binary_content).hexdigest(),
        'sha256': hashlib.sha256(elf_binary_content).hexdigest(),
    }


@pytest.fixture
def pe_known_hashes(pe_binary_content):
    """Compute known hashes for the PE test binary."""
    return {
        'md5': hashlib.md5(pe_binary_content).hexdigest(),
        'sha1': hashlib.sha1(pe_binary_content).hexdigest(),
        'sha256': hashlib.sha256(pe_binary_content).hexdigest(),
    }


# ============================================================================
# Sample Data Fixtures
# ============================================================================

@pytest.fixture
def sample_binary_data():
    """Sample binary data for entropy and hash testing."""
    return b"\x00\x01\x02\x03\x04\x05\x06\x07\x08\x09\x0a\x0b\x0c\x0d\x0e\x0f" * 16


@pytest.fixture
def high_entropy_data():
    """High entropy random-like data for testing."""
    import random
    random.seed(42)  # Reproducible
    return bytes(random.randint(0, 255) for _ in range(256))


@pytest.fixture
def low_entropy_data():
    """Low entropy repetitive data for testing."""
    return b"\x00" * 256


# ============================================================================
# PE Object Fixtures
# ============================================================================

@pytest.fixture
def pe_object(pe_binary_path):
    """Create a pefile PE object for testing."""
    import pefile
    try:
        pe = pefile.PE(pe_binary_path)
        yield pe
        pe.close()
    except Exception as e:
        pytest.skip(f"Failed to parse PE file: {e}")


# ============================================================================
# ELF Object Fixtures
# ============================================================================

@pytest.fixture
def elf_object(elf_binary_path):
    """Create an ELFFile object for testing."""
    from elftools.elf.elffile import ELFFile
    try:
        with open(elf_binary_path, 'rb') as f:
            elf = ELFFile(f)
            # We need to keep the file open for ELFFile to work
            yield elf
    except Exception as e:
        pytest.skip(f"Failed to parse ELF file: {e}")


# ============================================================================
# Dataclass Fixtures
# ============================================================================

@pytest.fixture
def sample_hash_dataclass():
    """Create a sample Hash dataclass."""
    from redb.models.dataclasses import Hash
    return Hash(
        md5="d41d8cd98f00b204e9800998ecf8427e",
        sha1="da39a3ee5e6b4b0d3255bfef95601890afd80709",
        sha256="e3b0c44298fc1c149afbf4c8996fb92427ae41e4649b934ca495991b7852b855"
    )


@pytest.fixture
def sample_hashes_dataclass():
    """Create a sample Hashes dataclass."""
    from redb.models.dataclasses import Hashes
    return Hashes(
        md5="d41d8cd98f00b204e9800998ecf8427e",
        sha1="da39a3ee5e6b4b0d3255bfef95601890afd80709",
        sha256="e3b0c44298fc1c149afbf4c8996fb92427ae41e4649b934ca495991b7852b855",
        ssdeep_hash="3::",
        tlsh_hash=""
    )


@pytest.fixture
def sample_basic_properties():
    """Create a sample BasicProperties dataclass."""
    from redb.models.dataclasses import BasicProperties
    return BasicProperties(
        filename="test.exe",
        sample_name="test.exe",
        filesize=1024,
        filetype="PE32 executable",
        filetype_mime="application/x-dosexec",
        filetype_magika="pebin",
        file_entropy=6.5
    )


# ============================================================================
# Utility Functions for Tests
# ============================================================================

def compute_entropy(data):
    """Compute entropy of data for verification in tests."""
    import math
    from collections import Counter

    if not data:
        return 0.0

    if isinstance(data, str):
        counts = Counter(data)
        frequencies = (i / len(data) for i in counts.values())
        return -sum(f * math.log(f, 2) for f in frequencies)
    else:
        occurrences = Counter(bytearray(data))
        entropy = 0
        for x in occurrences.values():
            p_x = float(x) / len(data)
            entropy -= p_x * math.log(p_x, 2)
        return entropy


# Make the function available as a fixture
@pytest.fixture
def entropy_calculator():
    """Return the entropy calculation function."""
    return compute_entropy


# ============================================================================
# Skip Markers
# ============================================================================

# Mark tests that require external tools
requires_die = pytest.mark.skipif(
    not os.path.exists("/usr/bin/diec") and not os.path.exists("/usr/local/bin/diec"),
    reason="Detect It Easy (diec) not installed"
)

requires_capa = pytest.mark.skipif(
    not os.path.exists("/usr/bin/capa") and not os.path.exists("/usr/local/bin/capa"),
    reason="capa not installed"
)

requires_floss = pytest.mark.skipif(
    not os.path.exists("/usr/bin/floss") and not os.path.exists("/usr/local/bin/floss"),
    reason="floss not installed"
)