James T. Yurkovich

12 papers Journal 10Unranked 1
YearRankTypeTitle / Venue / Authors
2024 J jnl
A framework towards digital twins for type 2 diabetes.
Frontiers Digit. Health
Yue Zhang, Guangrong Qin, Boris Aguilar, Noa Rappaport, James T. Yurkovich, Lance Pflieger, Sui Huang, Leroy Hood, Ilya Shmulevich
2021 J jnl
MASSpy: Building, simulating, and visualizing dynamic biological models in Python using mass action kinetics.
PLoS Comput. Biol.
Zachary B. Haiman, Daniel C. Zielinski, Yuko Koike, James T. Yurkovich, Bernhard O. Palsson
2020 J jnl
BiGG Models 2020: multi-strain genome-scale models and expansion across the phylogenetic tree.
Nucleic Acids Res.
Charles J. Norsigian, Neha Pusarla, John Luke McConn, James T. Yurkovich, Andreas Dräger, Bernhard O. Palsson, Zachary A. King
2020 J jnl
Visualizing metabolic network dynamics through time-series metabolomic data.
BMC Bioinform.
Lea Buchweitz, James T. Yurkovich, Christoph Blessing, Veronika Kohler, Fabian Schwarzkopf, Zachary A. King, Laurence Yang, Freyr Jóhannsson, Ólafur E. Sigurjónsson, Ottar Rolfsson, Julian Heinrich, Andreas Dräger
2018 J jnl
Network-level allosteric effects are elucidated by detailing how ligand-binding events modulate utilization of catalytic potentials.
PLoS Comput. Biol.
James T. Yurkovich, Miguel A. Alcantar, Zachary B. Haiman, Bernhard O. Palsson
2018 J jnl
Systems biology as an emerging paradigm in transfusion medicine.
BMC Syst. Biol.
James T. Yurkovich, Aarash Bordbar, Ólafur E. Sigurjónsson, Bernhard O. Palsson
2018 — —
The Systems Biology of Red Cell Metabolism: Physiology under Storage Conditions
James T. Yurkovich
2018 J jnl
Updated and standardized genome-scale reconstruction of Mycobacterium tuberculosis H37Rv, iEK1011, simulates flux states indicative of physiological conditions.
BMC Syst. Biol.
Erol S. Kavvas, Yara Seif, James T. Yurkovich, Charles J. Norsigian, Saugat Poudel, William W. Greenwald, Sankha Ghatak, Bernhard O. Palsson, Jonathan M. Monk
2017 J jnl
Biomarkers are used to predict quantitative metabolite concentration profiles in human red blood cells.
PLoS Comput. Biol.
James T. Yurkovich, Laurence Yang, Bernhard O. Palsson
2017 — conf
Utilizing biomarkers to forecast quantitative metabolite concentration profiles in human red blood cells.
CCTA
James T. Yurkovich, Laurence Yang, Bernhard O. Palsson
2016 J jnl
Solving Puzzles With Missing Pieces: The Power of Systems Biology [Point of View].
Proc. IEEE
James T. Yurkovich, Bernhard O. Palsson
2016 J jnl
Toward Community Standards and Software for Whole-Cell Modeling.
IEEE Trans. Biomed. Eng.
Dagmar Waltemath, Jonathan R. Karr, Frank T. Bergmann, Vijayalakshmi Chelliah, Michael Hucka, Marcus Krantz, Wolfram Liebermeister, Pedro Mendes, Chris J. Myers, Pinar Pir, Begum Alaybeyoglu, Naveen K. Aranganathan, Kambiz Baghalian, Arne T. Bittig, Paulo E. Pinto Burke, Matteo Cantarelli, Yin Hoon Chew, Rafael S. Costa, Joseph Cursons, Tobias Czauderna, Arthur P. Goldberg, Harold F. Gómez, Jens Hahn, Tuure Hameri, Daniel F. Hernandez Gardiol, Denis Kazakiewicz, Ilya Kiselev, Vincent Knight-Schrijver, Christian Knüpfer, Matthias König, Daewon Lee, Audald Lloret-Villas, Nikita Mandrik, J. Kyle Medley, Bertrand Moreau, Hojjat Naderi-Meshkin, Sucheendra K. Palaniappan, Daniel Priego-Espinosa, Martin Scharm, Mahesh Sharma, Kieran Smallbone, Natalie J. Stanford, Je-Hoon Song, Tom Theile, Milenko Tokic, Namrata Tomar, Vasundra Touré, Jannis Uhlendorf, Thawfeek M. Varusai, Leandro H. Watanabe, Florian Wendland, Markus Wolfien, James T. Yurkovich, Yan Zhu, Argyris Zardilis, Anna Zhukova, Falk Schreiber