James Richard Perkins

14 papers C 1Misc 1Journal 8Unranked 4

Year	Rank	Type	Title / Venue / Authors
2025	J	`jnl`	Advancing edge-based clustering and graph embedding for biological network analysis: a case study in RASopathies. Briefings Bioinform. Federico García-Criado, Pedro Seoane, Elena Rojano, Juan Garcia Ranea, James Richard Perkins
2024	J	`jnl`	Exploring miRNA-target gene pair detection in disease with coRmiT. Briefings Bioinform. José Córdoba-Caballero, James Richard Perkins, Federico García-Criado, Diana Gallego, Alicia Navarro-Sánchez, Mireia Moreno-Estellés, Concepción Garcés, Fernando Bonet, Carlos Romá-Mateo, Rocio Toro, Belén Perez, Pascual Sanz, Matthias Kohl, Elena Rojano, Pedro Seoane, Juan A. G. Ranea
2023	J	`jnl`	Integrating differential expression, co-expression and gene network analysis for the identification of common genes associated with tumor angiogenesis deregulation. J. Biomed. Informatics Beatriz Monterde, Elena Rojano, José Córdoba-Caballero, Pedro Seoane, James Richard Perkins, Miguel Ángel Medina, Juan A. G. Ranea
2022	J	`jnl`	Assigning protein function from domain-function associations using DomFun. BMC Bioinform. Elena Rojano, Fernando Moreno Jabato, James Richard Perkins, José Córdoba-Caballero, Federico García-Criado, Ian Sillitoe, Christine A. Orengo, Juan A. G. Ranea, Pedro Seoane-Zonjic
2020	—	`conf`	Comprehensive Analysis of Patients with Undiagnosed Genetic Diseases Using the Patient Exploration Tools Suite (PETS). IWBBIO Elena Rojano, Pedro Seoane-Zonjic, Fernando Moreno Jabato, James Richard Perkins, Juan A. G. Ranea
2020	—	`conf`	Kernel Based Approaches to Identify Hidden Connections in Gene Networks Using NetAnalyzer. IWBBIO Fernando Moreno Jabato, Elena Rojano, James Richard Perkins, Juan Antonio Garcia-Ranea, Pedro Seoane-Zonjic
2019	—	`conf`	Associating Protein Domains with Biological Functions: A Tripartite Network Approach. IWBBIO (2) Elena Rojano, James Richard Perkins, Ian Sillitoe, Christine A. Orengo, Juan Antonio Garcia-Ranea, Pedro Seoane
2019	J	`jnl`	Regulatory variants: from detection to predicting impact. Briefings Bioinform. Elena Rojano, Pedro Seoane, Juan A. G. Ranea, James Richard Perkins
2017	—	`conf`	Revealing the Relationship Between Human Genome Regions and Pathological Phenotypes Through Network Analysis. IWBBIO (1) Elena Rojano, Pedro Seoane, Anibal Bueno-Amoros, James Richard Perkins, Juan Antonio Garcia-Ranea
2017	J	`jnl`	Weighted Epistatic Analysis of NSAIDs Hypersensitivity Data. Eng. Appl. Artif. Intell. Alex Upton, Miguel Blanca, José Antonio Cornejo-García, James Richard Perkins
2016	J	`jnl`	Review: High-performance computing to detect epistasis in genome scale data sets. Briefings Bioinform. Alex Upton, Oswaldo Trelles, José Antonio Cornejo-García, James Richard Perkins
2015	Misc	`conf`	Epistatic Analysis of Clarkson Disease. ICCS Alex Upton, Oswaldo Trelles, James Richard Perkins
2014	C	`conf`	A Cloud-based GWAS Analysis Pipeline for Clinical Researchers. CLOSER Paul Heinzlreiter, James Richard Perkins, Óscar Torreño Tirado, Tor Johan Mikael Karlsson, Juan Antonio Ranea, Andreas Mitterecker, Miguel Blanca, Oswaldo Trelles
2012	J	`jnl`	Gene3D: a domain-based resource for comparative genomics, functional annotation and protein network analysis. Nucleic Acids Res. Jonathan G. Lees, Corin Yeats, James Richard Perkins, Ian Sillitoe, Robert Rentzsch, Benoit H. Dessailly, Christine A. Orengo