James R. Gattiker

15 papers B 2C 1Journal 10Unranked 2
YearRankTypeTitle / Venue / Authors
2024 J jnl
Environ. Model. Softw.
Grant Hutchings, James R. Gattiker, Braden Scherting, Rodman R. Linn
2023 J jnl
CoRR
Juan Castorena, L. Turin Dickman, Adam J. Killebrew, James R. Gattiker, Rodman R. Linn, E. Louise Loudermilk
2016 J jnl
Qual. Reliab. Eng. Int.
James R. Gattiker, Michael S. Hamada, David Higdon, Matthias Schonlau, William J. Welch
2013 J jnl
Technometrics
David Higdon, James R. Gattiker, Earl Lawrence, Charles S. Jackson, Michael Tobis, Matthew T. Pratola, Salman Habib, Katrin Heitmann, Steve Price
2006 conf
ICCSA (3)
James R. Gattiker, Earl Lawrence, David Higdon
2003 J jnl
Int. J. Artif. Intell. Tools
Nikolaos G. Bourbakis, James R. Gattiker, George Bebis
2003 J jnl
Int. J. Pattern Recognit. Artif. Intell.
Mike Fugate, James R. Gattiker
2002 conf
SVM
Mike Fugate, James R. Gattiker
2001 J jnl
Inf. Sci.
James R. Gattiker, Jason Tsong-Li Wang, Paul P. Wang
2001 J jnl
SIGKDD Explor.
Tom Burr, James R. Gattiker, Gregory S. LaBerge
2000 B conf
ICTAI
Nikolaos G. Bourbakis, George Bebis, James R. Gattiker
1999 J jnl
Int. J. Artif. Intell. Tools
James R. Gattiker, Jason Tsong-Li Wang
1995 C conf
SEKE
James R. Gattiker
1990 J jnl
IEEE Trans. Pattern Anal. Mach. Intell.
Rangachar Kasturi, Sing T. Bow, Wassim El-Masri, Jayesh Shah, James R. Gattiker, Umesh B. Mokate
1988 B conf
ICPR
Rangachar Kasturi, Sing T. Bow, James R. Gattiker, Jayesh Shah, Wassim El-Masri, Umesh B. Mokate, Suresh Honnenahalli
redb/s3_utils.py
← Index redb/s3_utils.py python
"""
S3 and file utility functions for REDB.

Contains MinIO/S3 client creation, S3 key generation,
file download, and archive extraction helpers.
"""
import os
import tempfile
from typing import Optional, List

from minio import Minio
from minio.error import S3Error


def get_minio_client():
    """Create and return a Minio client using credentials from .env file"""
    return Minio(
        endpoint=os.getenv("S3_ENDPOINT"),
        access_key=os.getenv("S3_ACCESS_KEY"),
        secret_key=os.getenv("S3_SECRET_KEY"),
        secure=os.getenv("S3_SECURE", "false").lower() == "true"
    )


def generate_s3_key_from_hash(sample_hash: str) -> str:
    """
    Generate S3 key from hash using sharding structure.
    Example: 09f7d02a3c2382199458c98a62b045145ee54ab6aba86166aecf3d10c3c1444c
    becomes: 09/f7/09f7d02a3c2382199458c98a62b045145ee54ab6aba86166aecf3d10c3c1444c.zip
    """
    if len(sample_hash) < 4:
        raise ValueError(f"Hash too short for sharding: {sample_hash}")

    # Create sharded path: first 2 chars / next 2 chars / full_hash.zip
    return f"{sample_hash[:2]}/{sample_hash[2:4]}/{sample_hash}.zip"


def download_s3_object(s3_bucket: str, s3_key: str, temp_dir: str, logger=None) -> Optional[str]:
    """
    Download an object from S3 to a local temporary directory and return the local path.
    If the .zip file is not found, automatically tries .7z as a fallback for legacy uploads.
    """
    try:
        minio_client = get_minio_client()
        local_path = os.path.join(temp_dir, os.path.basename(s3_key))

        # Download the file
        minio_client.fget_object(s3_bucket, s3_key, local_path)

        return local_path
    except S3Error as e:
        # If .zip not found and error is NoSuchKey, try .7z fallback
        if e.code == 'NoSuchKey' and s3_key.endswith('.zip'):
            s3_key_7z = s3_key[:-4] + '.7z'  # Replace .zip with .7z
            if logger:
                logger.info(f".zip not found, trying .7z fallback: {s3_key_7z}")
            try:
                local_path_7z = os.path.join(temp_dir, os.path.basename(s3_key_7z))
                minio_client.fget_object(s3_bucket, s3_key_7z, local_path_7z)
                if logger:
                    logger.info(f"Successfully downloaded .7z fallback: {s3_key_7z}")
                return local_path_7z
            except S3Error as e2:
                if logger:
                    logger.error(f"Failed to download S3 object {s3_key} (tried both .zip and .7z): {e2}")
                else:
                    print(f"[ERROR] Failed to download S3 object {s3_key} (tried both .zip and .7z): {e2}")
                return None
        else:
            if logger:
                logger.error(f"Failed to download S3 object {s3_key}: {e}")
            else:
                print(f"[ERROR] Failed to download S3 object {s3_key}: {e}")
            return None


def extract_fat_slices(macho, output_dir: str, logger) -> List[tuple]:
    """
    Extract slices from FAT Mach-O binary using machofile's dump_slices() API.

    Args:
        macho: Parsed machofile.UniversalMachO object
        output_dir: Directory to write slice files
        logger: Logger instance

    Returns:
        List of (arch_name, slice_path, slice_sha256, slice_md5, slice_sha1) tuples
    """
    result = []
    try:
        # Use machofile's dump_slices API (v2026.2.5+)
        slices = macho.dump_slices(output_dir=output_dir)
        logger.debug(f"Extracted {len(slices)} slices from FAT binary")

        for arch_name, slice_path in slices:
            # Get hash info for this slice from machofile
            general_info = macho.get_general_info(arch=arch_name)
            slice_sha256 = general_info.get('SHA256')
            slice_md5 = general_info.get('MD5')
            slice_sha1 = general_info.get('SHA1')
            result.append((arch_name, slice_path, slice_sha256, slice_md5, slice_sha1))
            logger.debug(f"Slice {arch_name}: {slice_sha256}")

    except Exception as e:
        logger.error(f"Error extracting FAT slices: {e}")

    return result