James R. Brown

12 papers Journal 9Unranked 3
YearRankTypeTitle / Venue / Authors
2025 J jnl
Context-Aware Regularization with Markovian Integration for Attention-Based Nucleotide Analysis.
CoRR
Mohammad S. Refahi, Mahdi Abavisani, Bahrad A. Sokhansanj, James R. Brown, Gail Rosen
2025 — conf
Fast and Scalable Gene Embedding Search: A Comparative Study of FAISS and ScaNN.
BCB Companion
Mohammadsaleh Refahi, Gavin L. A. Hearne, Harrison Muller, Kieran Lynch, Bahrad A. Sokhansanj, James R. Brown, Gail Rosen
2025 J jnl
Fast and Scalable Gene Embedding Search: A Comparative Study of FAISS and ScaNN.
CoRR
Mohammad S. Refahi, Gavin L. A. Hearne, Harrison Muller, Kieran Lynch, Bahrad A. Sokhansanj, James R. Brown, Gail Rosen
2025 J jnl
Learning to Align Molecules and Proteins: A Geometry-Aware Approach to Binding Affinity.
CoRR
Mohammad S. Refahi, Bahrad A. Sokhansanj, James R. Brown, Gail Rosen
2025 — conf
MicroTraitLLM: A RAG-based, Microbe-focused LLM for Researchers.
BCB
Glen Rogers, James R. Brown, Bahrad A. Sokhansanj, Joshua Chang Mell, Gail L. Rosen
2024 — conf
Normalized Compression Distance for DNA Classification.
BCB
Gavin L. A. Hearne, Mohammad S. Refahi, Haozhe Neil Duan, James R. Brown, Gail L. Rosen
2024 J jnl
Predicting Anti-microbial Resistance using Large Language Models.
CoRR
Hyunwoo Yoo, Bahrad A. Sokhansanj, James R. Brown, Gail Rosen
2019 J jnl
Does Transparency Stifle or Facilitate Innovation?
Manag. Sci.
James R. Brown, Gustav Martinsson
2018 J jnl
Meta-analysis of human gene expression in response to Mycobacterium tuberculosis infection reveals potential therapeutic targets.
BMC Syst. Biol.
Zhang Wang, Seda Arat, Michal Magid-Slav, James R. Brown
2013 J jnl
Target Prediction for an Open Access Set of Compounds Active against
PLoS Comput. Biol.
Francisco Martínez-Jiménez, George Papadatos, Lun Yang, Iain M. Wallace, Vinod Kumar, Ursula Pieper, Andrej Sali, James R. Brown, John P. Overington, Marc A. Martí-Renom
2012 J jnl
Data mining the human gut microbiota for therapeutic targets.
Briefings Bioinform.
Matthew Collison, Robert P. Hirt, Anil Wipat, Sirintra Nakjang, Philippe Sanseau, James R. Brown
1972 J jnl
A Model for Ergodic Automorphisms on Groups.
Math. Syst. Theory
James R. Brown