James P. Vary

36 papers A 1C 3Misc 2Journal 16Unranked 14
YearRankTypeTitle / Venue / Authors
2025 J jnl
J. Comput. Phys.
Dong Min Roh, Dean Lee, Pieter Maris, Esmond Ng, James P. Vary, Chao Yang
2025 J jnl
J. Comput. Sci.
Diyi Liu, Weijie Du, Lin Lin, James P. Vary, Chao Yang
2025 J jnl
J. Supercomput.
Robert A. M. Basili, Wenyang Qian, Shiplu Sarker, Shuo Tang, Austin Castellino, Mary Eshaghian-Wilner, Ashfaq Khokhar, Glenn R. Luecke, James P. Vary
2024 J jnl
CoRR
Dong Min Roh, Esmond Ng, Chao Yang, Dean Lee, Pieter Maris, James P. Vary
2024 J jnl
CoRR
Diyi Liu, Weijie Du, Lin Lin, James P. Vary, Chao Yang
2024 conf
IPDPS (Workshops)
Shiplu Sarker, Wenyang Qian, Soham Pal, Robert A. M. Basili, Mary Eshaghian-Wilner, Ashfaq Khokhar, Glenn R. Luecke, James P. Vary
2023 J jnl
Entropy
Wenyang Qian, Robert A. M. Basili, Mary Mehrnoosh Eshaghian-Wilner, Ashfaq Khokhar, Glenn R. Luecke, James P. Vary
2023 conf
IPDPS Workshops
Wenyang Qian, Robert A. M. Basili, Mary Eshaghian-Wilner, Ashfaq Khokhar, Glenn R. Luecke, James P. Vary
2023 conf
IPDPS Workshops
Robert A. M. Basili, Wenyang Qian, Shuo Tang, Austin Castellino, Mary Eshaghian-Wilner, Ashfaq Khokhar, Glenn R. Luecke, James P. Vary
2022 conf
IPDPS Workshops
Robert A. M. Basili, Wenyang Qian, Shuo Tang, Austin Castellino, Mary Eshaghian-Wilner, Ashfaq Khokhar, Glenn R. Luecke, James P. Vary
2021 J jnl
Entropy
Michael Kreshchuk, Shaoyang Jia, William M. Kirby, Gary Goldstein, James P. Vary, Peter J. Love
2018 J jnl
Comput. Phys. Commun.
Meiyue Shao, Hasan Metin Aktulga, Chao Yang, Esmond G. Ng, Pieter Maris, James P. Vary
2018 C conf
CLUSTER
Nathan T. Weeks, Glenn R. Luecke, Pieter Maris, James P. Vary
2018 J jnl
CoRR
Gianina Alina Negoita, James P. Vary, Glenn R. Luecke, Pieter Maris, Andrey M. Shirokov, Ik Jae Shin, Youngman Kim, Esmond G. Ng, Chao Yang, Matthew Lockner, Gurpur M. Prabhu
2017 J jnl
IEEE Trans. Parallel Distributed Syst.
Hasan Metin Aktulga, Md. Afibuzzaman, Samuel Williams, Aydin Buluç, Meiyue Shao, Chao Yang, Esmond G. Ng, Pieter Maris, James P. Vary
2017 C conf
ISPDC
Gianina Alina Negoita, Glenn R. Luecke, Marina Kraeva, Gurpur M. Prabhu, James P. Vary
2016 J jnl
CoRR
Meiyue Shao, Hasan Metin Aktulga, Chao Yang, Esmond G. Ng, Pieter Maris, James P. Vary
2016 J jnl
Comput. Phys. Commun.
Tomás Dytrych, Pieter Maris, Kristina D. Launey, Jerry P. Draayer, James P. Vary, Daniel Langr, Erik Saule, Mark A. Caprio, Ümit V. Çatalyürek, Masha Sosonkina
2015 J jnl
Concurr. Comput. Pract. Exp.
Dossay Oryspayev, Hasan Metin Aktulga, Masha Sosonkina, Pieter Maris, James P. Vary
2014 J jnl
Concurr. Comput. Pract. Exp.
Hasan Metin Aktulga, Chao Yang, Esmond G. Ng, Pieter Maris, James P. Vary
2013 J jnl
Comput. Phys. Commun.
Scott Bogner, Aurel Bulgac, Joseph A. Carlson, Jonathan Engel, George L. Fann, Richard J. Furnstahl, Stefano Gandolfi, Gaute Hagen, Mihai Horoi, Calvin W. Johnson, Markus Kortelainen, Ewing L. Lusk, Pieter Maris, Hai Ah Nam, Petr Navratil, Witold Nazarewicz, Esmond G. Ng, Gustavo P. A. Nobre, W. Erich Ormand, Thomas Papenbrock, Junchen Pei, Steven C. Pieper, Sofia Quaglioni, Kenneth J. Roche, Jason Sarich, Nicolas Schunck, Masha Sosonkina, Jun Terasaki, Ian J. Thompson, James P. Vary, Stefan M. Wild
2013 conf
IPDPS Workshops
Dossay Oryspayev, Hugh D. Potter, Pieter Maris, Masha Sosonkina, James P. Vary, Sven Binder, Angelo Calci, Joachim Langhammer, Robert Roth
2012 conf
ICPP Workshops
Zheng Zhou, Erik Saule, Hasan Metin Aktulga, Chao Yang, Esmond G. Ng, Pieter Maris, James P. Vary, Ümit V. Çatalyürek
2012 C conf
CLUSTER
Zheng Zhou, Erik Saule, Hasan Metin Aktulga, Chao Yang, Esmond G. Ng, Pieter Maris, James P. Vary, Ümit V. Çatalyürek
2012 Misc conf
ICCS
Avinash Srinivasa, Masha Sosonkina, Pieter Maris, James P. Vary
2012 conf
Euro-Par
Hasan Metin Aktulga, Chao Yang, Esmond G. Ng, Pieter Maris, James P. Vary
2012 conf
IEEE SCC
Chathura Herath, Fang Liu, Suresh Marru, Lahiru Gunathilake, Masha Sosonkina, James P. Vary, Pieter Maris, Marlon E. Pierce
2011 conf
SpringSim (HPC)
Fang Liu, Ritu Mundhe, Masha Sosonkina, Chase Cockrell, Miles Aronnax, Pieter Maris, James P. Vary
2011 J jnl
CoRR
Esmond G. Ng, Jason Sarich, Stefan M. Wild, Todd S. Munson, Hasan Metin Aktulga, Chao Yang, Pieter Maris, James P. Vary, Nicolas Schunck, M. G. Bertolli, Markus Kortelainen, Witold Nazarewicz, Thomas Papenbrock, M. V. Stoitsov
2011 conf
IPDPS Workshops
Avinash Srinivasa, Masha Sosonkina, Pieter Maris, James P. Vary
2011 conf
HPCS
Hasan Metin Aktulga, Chao Yang, Esmond G. Ng, Pieter Maris, James P. Vary
2011 conf
Euro-Par Workshops (1)
Hasan Metin Aktulga, Chao Yang, Ümit V. Çatalyürek, Pieter Maris, James P. Vary, Esmond G. Ng
2010 Misc conf
ICCS
Pieter Maris, Masha Sosonkina, James P. Vary, Esmond G. Ng, Chao Yang
2009 conf
ICCS (1)
Nikhil Laghave, Masha Sosonkina, Pieter Maris, James P. Vary
2008 A conf
SC
Philip Sternberg, Esmond G. Ng, Chao Yang, Pieter Maris, James P. Vary, Masha Sosonkina, Hung Viet Le
2008 conf
ICCS (1)
Masha Sosonkina, Anurag Sharda, Alina Negoita, James P. Vary
tests/unit/test_smali_normalization.py
← Index tests/unit/test_smali_normalization.py python
"""Unit tests for smali semantic normalization.

Tests the three normalization levels (category, opcode, opcode_api),
opcode categorization, ACFG feature index mapping, and integration
with MinHash computation.
"""
import pytest

pytestmark = [pytest.mark.unit, pytest.mark.apk, pytest.mark.decompile]


class TestCategorizeOpcode:
    """Tests for opcode -> semantic category mapping."""

    def test_arithmetic(self):
        from redb.extractors.decompiler.apk.smali_normalization import categorize_opcode
        assert categorize_opcode("add-int") == "ALU"
        assert categorize_opcode("mul-long/2addr") == "ALU"
        assert categorize_opcode("neg-int") == "ALU"

    def test_data_movement(self):
        from redb.extractors.decompiler.apk.smali_normalization import categorize_opcode
        assert categorize_opcode("move-result") == "MOV"
        assert categorize_opcode("const/4") == "CONST"
        assert categorize_opcode("const-string") == "CONST"

    def test_memory_access(self):
        from redb.extractors.decompiler.apk.smali_normalization import categorize_opcode
        assert categorize_opcode("iget-object") == "LOAD"
        assert categorize_opcode("sput-wide") == "STORE"
        assert categorize_opcode("aget-byte") == "LOAD"

    def test_invocation(self):
        from redb.extractors.decompiler.apk.smali_normalization import categorize_opcode
        assert categorize_opcode("invoke-virtual") == "CALL"
        assert categorize_opcode("invoke-static") == "CALL"
        assert categorize_opcode("invoke-direct") == "CALL"

    def test_control_flow(self):
        from redb.extractors.decompiler.apk.smali_normalization import categorize_opcode
        assert categorize_opcode("if-eqz") == "BRANCH"
        assert categorize_opcode("goto") == "JMP"
        assert categorize_opcode("goto/16") == "JMP"
        assert categorize_opcode("return-void") == "RET"

    def test_comparison(self):
        from redb.extractors.decompiler.apk.smali_normalization import categorize_opcode
        assert categorize_opcode("cmp-long") == "CMP"
        assert categorize_opcode("cmpl-float") == "CMP"
        assert categorize_opcode("cmpg-double") == "CMP"

    def test_conversion(self):
        from redb.extractors.decompiler.apk.smali_normalization import categorize_opcode
        assert categorize_opcode("int-to-long") == "CONV"
        assert categorize_opcode("float-to-int") == "CONV"

    def test_object_type(self):
        from redb.extractors.decompiler.apk.smali_normalization import categorize_opcode
        assert categorize_opcode("new-instance") == "ALLOC"
        assert categorize_opcode("check-cast") == "TYPE"
        assert categorize_opcode("instance-of") == "TYPE"

    def test_exception_sync(self):
        from redb.extractors.decompiler.apk.smali_normalization import categorize_opcode
        assert categorize_opcode("throw") == "EXC"
        assert categorize_opcode("monitor-enter") == "SYNC"

    def test_unknown(self):
        from redb.extractors.decompiler.apk.smali_normalization import categorize_opcode
        assert categorize_opcode("nop") == "OTHER"


class TestNormalizeInstruction:
    """Tests for single instruction normalization at various levels."""

    def test_category_level(self):
        from redb.extractors.decompiler.apk.smali_normalization import normalize_instruction
        assert normalize_instruction("add-int v0, v1, v2", "category") == "ALU"
        assert normalize_instruction("invoke-virtual {p0}, Lcom/Foo;->bar()V", "category") == "CALL"
        assert normalize_instruction("return-void", "category") == "RET"

    def test_opcode_level_strips_width(self):
        from redb.extractors.decompiler.apk.smali_normalization import normalize_instruction
        # Width variants collapse to same base
        assert normalize_instruction("add-int v0, v1, v2", "opcode") == "add"
        assert normalize_instruction("add-long v0, v2, v4", "opcode") == "add"
        assert normalize_instruction("add-float v0, v1, v2", "opcode") == "add"
        # Addressing modes collapse too
        assert normalize_instruction("add-int/2addr v0, v1", "opcode") == "add"

    def test_opcode_api_invoke(self):
        from redb.extractors.decompiler.apk.smali_normalization import normalize_instruction
        result = normalize_instruction(
            "invoke-virtual {p0, v0}, Lcom/example/Foo;->bar(I)V"
        )
        assert result == "CALL Lcom/example/Foo;->bar(I)V"

    def test_opcode_api_invoke_no_ref(self):
        from redb.extractors.decompiler.apk.smali_normalization import normalize_instruction
        # If somehow no method ref is found, fallback to CALL
        assert normalize_instruction("invoke-virtual {v0}") == "CALL"

    def test_opcode_api_field_load(self):
        from redb.extractors.decompiler.apk.smali_normalization import normalize_instruction
        result = normalize_instruction(
            "iget-object v0, p0, Lcom/Foo;->mField:Ljava/lang/String;"
        )
        assert result == "LOAD Lcom/Foo;->mField:Ljava/lang/String;"

    def test_opcode_api_field_store(self):
        from redb.extractors.decompiler.apk.smali_normalization import normalize_instruction
        result = normalize_instruction(
            "iput-object v0, p0, Lcom/Foo;->mField:Ljava/lang/String;"
        )
        assert result == "STORE Lcom/Foo;->mField:Ljava/lang/String;"

    def test_opcode_api_androguard_field_format(self):
        """androguard uses space instead of colon in field references."""
        from redb.extractors.decompiler.apk.smali_normalization import normalize_instruction
        result = normalize_instruction(
            "iget-object v0, p0, Lcom/Foo;->mField Ljava/lang/String;"
        )
        assert result.startswith("LOAD")
        assert "Lcom/Foo;->mField" in result

    def test_opcode_api_new_instance(self):
        from redb.extractors.decompiler.apk.smali_normalization import normalize_instruction
        result = normalize_instruction(
            "new-instance v0, Lcom/example/MyClass;"
        )
        assert result == "ALLOC Lcom/example/MyClass;"

    def test_opcode_api_const_string(self):
        from redb.extractors.decompiler.apk.smali_normalization import normalize_instruction
        result = normalize_instruction(
            'const-string v0, "hello world"'
        )
        assert result == 'CONST_STR "hello world"'

    def test_opcode_api_const_string_jumbo(self):
        from redb.extractors.decompiler.apk.smali_normalization import normalize_instruction
        result = normalize_instruction(
            'const-string/jumbo v0, "large string"'
        )
        assert result == 'CONST_STR "large string"'

    def test_opcode_api_fallback_to_category(self):
        from redb.extractors.decompiler.apk.smali_normalization import normalize_instruction
        # Non-special instructions fall back to category
        assert normalize_instruction("add-int v0, v1, v2") == "ALU"
        assert normalize_instruction("return-void") == "RET"
        assert normalize_instruction("nop") == "OTHER"

    def test_empty_input(self):
        from redb.extractors.decompiler.apk.smali_normalization import normalize_instruction
        assert normalize_instruction("") == ""
        assert normalize_instruction("   ") == ""


class TestNormalizeMethodBody:
    """Tests for full method body normalization."""

    def test_filters_directives_labels_comments(self):
        from redb.extractors.decompiler.apk.smali_normalization import normalize_method_body
        body = """\
.locals 2
# comment
:label_0
add-int v0, v1, v2
.line 42
invoke-virtual {p0}, Lcom/Foo;->bar()V
return-void
"""
        result = normalize_method_body(body, "category")
        assert result == ["ALU", "CALL", "RET"]

    def test_opcode_api_preserves_api_refs(self):
        from redb.extractors.decompiler.apk.smali_normalization import normalize_method_body
        body = """\
const/4 v0, 0x0
invoke-virtual {p0, v0}, Lcom/Foo;->setX(I)V
iget-object v1, p0, Lcom/Foo;->name:Ljava/lang/String;
return-void
"""
        result = normalize_method_body(body, "opcode_api")
        assert result[0] == "CONST"
        assert result[1] == "CALL Lcom/Foo;->setX(I)V"
        assert result[2] == "LOAD Lcom/Foo;->name:Ljava/lang/String;"
        assert result[3] == "RET"

    def test_empty_body(self):
        from redb.extractors.decompiler.apk.smali_normalization import normalize_method_body
        assert normalize_method_body("") == []
        assert normalize_method_body("\n\n") == []


class TestNormalizationWithMinHash:
    """Integration tests: normalization + MinHash computation."""

    def test_minhash_returns_signature(self):
        from redb.extractors.decompiler.apk.method_extractor import compute_minhash
        body = """\
const/4 v0, 0x0
invoke-virtual {p0, v0}, Lcom/Foo;->bar(I)V
iget-object v1, p0, Lcom/Foo;->name:Ljava/lang/String;
add-int v2, v0, v1
return-void
"""
        sig = compute_minhash(body)
        assert sig is not None
        assert len(sig) == 64
        assert all(0 <= v < 256 for v in sig)

    def test_minhash_register_invariance(self):
        """Same operations with different registers should produce identical signatures."""
        from redb.extractors.decompiler.apk.method_extractor import compute_minhash
        body_a = """\
const/4 v0, 0x0
invoke-virtual {p0, v0}, Lcom/Foo;->bar(I)V
iget-object v1, p0, Lcom/Foo;->name:Ljava/lang/String;
add-int v2, v0, v1
return-void
"""
        body_b = """\
const/4 v3, 0x0
invoke-virtual {p1, v3}, Lcom/Foo;->bar(I)V
iget-object v4, p1, Lcom/Foo;->name:Ljava/lang/String;
add-int v5, v3, v4
return-void
"""
        sig_a = compute_minhash(body_a)
        sig_b = compute_minhash(body_b)
        assert sig_a == sig_b

    def test_minhash_width_invariance(self):
        """Width variants of same operations should produce identical signatures."""
        from redb.extractors.decompiler.apk.method_extractor import compute_minhash
        body_int = """\
add-int v0, v1, v2
sub-int v3, v0, v1
mul-int v4, v0, v3
return v4
"""
        body_long = """\
add-long v0, v2, v4
sub-long v6, v0, v2
mul-long v8, v0, v6
return-wide v8
"""
        sig_int = compute_minhash(body_int)
        sig_long = compute_minhash(body_long)
        # Both normalize to ALU, ALU, ALU, RET -> identical
        assert sig_int == sig_long

    def test_minhash_different_apis_differ(self):
        """Methods calling different APIs should produce different signatures."""
        from redb.extractors.decompiler.apk.method_extractor import compute_minhash
        body_a = """\
const/4 v0, 0x0
invoke-virtual {p0, v0}, Lcom/crypto/AES;->encrypt([B)[B
invoke-virtual {v0}, Ljava/io/OutputStream;->write([B)V
return-void
"""
        body_b = """\
const/4 v0, 0x0
invoke-virtual {p0, v0}, Ljava/lang/String;->length()I
invoke-virtual {v0}, Ljava/io/PrintStream;->println(I)V
return-void
"""
        sig_a = compute_minhash(body_a)
        sig_b = compute_minhash(body_b)
        assert sig_a != sig_b

    def test_minhash_too_few_instructions(self):
        from redb.extractors.decompiler.apk.method_extractor import compute_minhash
        assert compute_minhash("return-void\nnop") is None


class TestACFGBlockFeatures:
    """Tests for per-block ACFG feature extraction via smali_cfg."""

    def test_simple_linear_method(self):
        from redb.extractors.decompiler.apk.smali_cfg import compute_cfg_metrics
        body = """\
add-int v0, v1, v2
invoke-virtual {p0}, Lcom/Foo;->bar()V
return-void
"""
        metrics = compute_cfg_metrics(body)
        assert metrics.block_count >= 1
        assert len(metrics.block_features) == metrics.block_count
        # Each feature vector has 8 elements
        for feat in metrics.block_features:
            assert len(feat) == 8

    def test_branching_method_has_multiple_blocks(self):
        from redb.extractors.decompiler.apk.smali_cfg import compute_cfg_metrics
        body = """\
const/4 v0, 0x0
if-eqz v0, :cond_0
invoke-virtual {p0}, Lcom/Foo;->a()V
goto :goto_0
:cond_0
invoke-virtual {p0}, Lcom/Foo;->b()V
:goto_0
return-void
"""
        metrics = compute_cfg_metrics(body)
        assert metrics.block_count >= 3
        assert len(metrics.block_features) == metrics.block_count

    def test_feature_vector_arithmetic_count(self):
        from redb.extractors.decompiler.apk.smali_cfg import compute_cfg_metrics
        body = """\
add-int v0, v1, v2
sub-int v3, v0, v1
mul-int v4, v0, v3
return v4
"""
        metrics = compute_cfg_metrics(body)
        assert len(metrics.block_features) == 1
        feat = metrics.block_features[0]
        # feat[0] = instr_count (4), feat[1] = arithmetic (3)
        assert feat[0] == 4
        assert feat[1] >= 3  # 3 ALU ops

    def test_feature_vector_call_count(self):
        from redb.extractors.decompiler.apk.smali_cfg import compute_cfg_metrics
        body = """\
invoke-virtual {p0}, Lcom/A;->a()V
invoke-static {v0}, Lcom/B;->b()V
return-void
"""
        metrics = compute_cfg_metrics(body)
        feat = metrics.block_features[0]
        # feat[4] = call count
        assert feat[4] == 2