James M. Osborne

24 papers Misc 1Journal 22Unranked 1
YearRankTypeTitle / Venue / Authors
2024 J jnl
Advancements in multicellular simulations.
Nat. Comput. Sci.
Domenic P. J. Germano, James M. Osborne
2024 J jnl
Spatial information allows inference of the prevalence of direct cell-to-cell viral infection.
PLoS Comput. Biol.
Thomas Williams, James M. McCaw, James M. Osborne
2023 J jnl
Editorial: Do individuals matter? - Individual-based versus population-based models applied to biology and health.
Frontiers Appl. Math. Stat.
Ivo Siekmann, James M. Osborne
2023 J jnl
Mathematical models of developmental vascular remodelling: A review.
PLoS Comput. Biol.
Jessica R. Crawshaw, Jennifer A. Flegg, Miguel O. Bernabeu, James M. Osborne
2022 J jnl
A simple history-dependent remeshing technique to increase finite element model stability in elastic surface deformations.
J. Comput. Appl. Math.
Jessica R. Crawshaw, Jennifer A. Flegg, James M. Osborne
2022 J jnl
Multiscale modelling of desquamation in the interfollicular epidermis.
PLoS Comput. Biol.
Claire Miller, Edmund J. Crampin, James M. Osborne
2022 J jnl
Publisher Correction: A rigid body framework for multicellular modeling.
Nat. Comput. Sci.
Phillip J. Brown, J. Edward F. Green, Benjamin J. Binder, James M. Osborne
2021 J jnl
A rigid body framework for multicellular modeling.
Nat. Comput. Sci.
Phillip J. Brown, J. Edward F. Green, Benjamin J. Binder, James M. Osborne
2020 J jnl
A modular framework for multiscale, multicellular, spatiotemporal modeling of acute primary viral infection and immune response in epithelial tissues and its application to drug therapy timing and effectiveness.
PLoS Comput. Biol.
T. J. Sego, Josua Aponte-Serrano, Juliano Ferrari Gianlupi, Samuel R. Heaps, Kira Breithaupt, Lutz Brusch, Jessica R. Crawshaw, James M. Osborne, Ellen M. Quardokus, Richard K. Plemper, James A. Glazier
2020 J jnl
A simple history dependent remeshing technique to increase finite element model stability in elastic surface deformations.
CoRR
Jessica R. Crawshaw, Jennifer A. Flegg, James M. Osborne
2020 J jnl
Chaste: Cancer, Heart and Soft Tissue Environment.
J. Open Source Softw.
Fergus R. Cooper, Ruth E. Baker, Miguel O. Bernabeu, Rafel Bordas, Louise Bowler, Alfonso Bueno-Orovio, Helen M. Byrne, Valentina Carapella, Louie Cardone-Noott, Jonathan Cooper, Sara Dutta, Benjamin D. Evans, Alexander G. Fletcher, James A. Grogan, Wenxian Guo, Daniel G. Harvey, Maurice Hendrix, David Kay, Jochen Kursawe, Philip K. Maini, Beth McMillan, Gary R. Mirams, James M. Osborne, Pras Pathmanathan, Joe Pitt-Francis, Martin Robinson, Blanca Rodríguez, Raymond J. Spiteri, David Gavaghan
2020 J jnl
Modelling the effect of subcellular mutations on the migration of cells in the colorectal crypt.
BMC Bioinform.
Lotte B. Romijn, Axel A. Almet, Chin Wee Tan, James M. Osborne
2018 — conf
A Fully Discrete Open Source Framework for the Simulation of Vascular Remodelling.
EMBC
James M. Osborne, Miguel O. Bernabeu
2017 J jnl
Comparing individual-based approaches to modelling the self-organization of multicellular tissues.
PLoS Comput. Biol.
James M. Osborne, Alexander G. Fletcher, Joe Pitt-Francis, Philip K. Maini, David J. Gavaghan
2017 J jnl
The role of the Hes1 crosstalk hub in Notch-Wnt interactions of the intestinal crypt.
PLoS Comput. Biol.
Sophie K. Kay, Heather A. Harrington, Sarah Shepherd, Keith Brennan, Trevor Dale, James M. Osborne, David J. Gavaghan, Helen M. Byrne
2015 J jnl
A parallel implementation of an off-lattice individual-based model of multicellular populations.
Comput. Phys. Commun.
Daniel G. Harvey, Alexander G. Fletcher, James M. Osborne, Joe Pitt-Francis
2015 J jnl
Software development practices in academia: a case study comparison.
CoRR
Derek Groen, Xiaohu Guo, James A. Grogan, Ulf D. Schiller, James M. Osborne
2015 J jnl
Ten Simple Rules for a Successful Cross-Disciplinary Collaboration.
PLoS Comput. Biol.
Bernhard Knapp, Rémi Bardenet, Miguel O. Bernabeu, Rafel Bordas, Maria Bruna, Ben Calderhead, Jonathan Cooper, Alexander G. Fletcher, Derek Groen, Bram Kuijper, Joanna Lewis, Greg J. McInerny, Timo Minssen, James M. Osborne, Verena Paulitschke, Joe Pitt-Francis, Jelena Todoric, Christian A. Yates, David Gavaghan, Charlotte M. Deane
2014 J jnl
Ten Simple Rules for Effective Computational Research.
PLoS Comput. Biol.
James M. Osborne, Miguel O. Bernabeu, Maria Bruna, Ben Calderhead, Jonathan Cooper, Neil Dalchau, Sara-Jane Dunn, Alexander G. Fletcher, Robin Freeman, Derek Groen, Bernhard Knapp, Greg J. McInerny, Gary R. Mirams, Joe Pitt-Francis, Biswa Sengupta, David W. Wright, Christian A. Yates, David Gavaghan, Stephen Emmott, Charlotte M. Deane
2014 J jnl
The Free Energy Landscape of Dimerization of a Membrane Protein, NanC.
PLoS Comput. Biol.
Thomas A. Dunton, Joseph E. Goose, David J. Gavaghan, Mark S. P. Sansom, James M. Osborne
2013 J jnl
Chaste: An Open Source C++ Library for Computational Physiology and Biology.
PLoS Comput. Biol.
Gary R. Mirams, Christopher J. Arthurs, Miguel O. Bernabeu, Rafel Bordas, Jonathan Cooper, Alberto Corrias, Yohan Davit, Sara-Jane Dunn, Alexander G. Fletcher, Daniel G. Harvey, Megan E. Marsh, James M. Osborne, Pras Pathmanathan, Joe Pitt-Francis, James Southern, Nejib Zemzemi, David Gavaghan
2013 Misc conf
Connecting Models to Data in Multiscale Multicellular Tissue Simulations.
ICCS
Jonathan Cooper, James M. Osborne
2012 J jnl
A Two-Dimensional Model of the Colonic Crypt Accounting for the Role of the Basement Membrane and Pericryptal Fibroblast Sheath.
PLoS Comput. Biol.
Sara-Jane Dunn, Paul L. Appleton, Scott A. Nelson, Inke S. Näthke, David Gavaghan, James M. Osborne
2009 J jnl
Chaste: A test-driven approach to software development for biological modelling.
Comput. Phys. Commun.
Joe Pitt-Francis, Pras Pathmanathan, Miguel O. Bernabeu, Rafel Bordas, Jonathan Cooper, Alexander G. Fletcher, Gary R. Mirams, Philip J. Murray, James M. Osborne, Alex Walter, S. Jonathan Chapman, Alan Garny, Ingeborg M. M. van Leeuwen, Philip K. Maini, Blanca Rodríguez, Sarah L. Waters, Jonathan P. Whiteley, Helen M. Byrne, David Gavaghan