James Jago

16 papers Journal 2Unranked 14
YearRankTypeTitle / Venue / Authors
2022 conf
MICCAI (6)
Qi Zeng, Shahed K. Mohammed, Emily H. T. Pang, Caitlin Schneider, Mohammad Honarvar, Julio Lobo, Changhong Hu, James Jago, Gary C. Ng, Robert Rohling, Septimiu E. Salcudean
2021 conf
ISBI
Pooneh R. Tabrizi, Jonathan Zember, Bruce Michael Sprague, Steven Hoefer, Ramon Sánchez-Jacob, James Jago, Dorothy Bulas, Hans G. Pohl, Marius George Linguraru
2021 conf
MLMI@MICCAI
Pooneh R. Tabrizi, Jonathan Zember, Bruce Michael Sprague, Steven Hoefer, Ramon Sánchez-Jacob, James Jago, Dorothy Bulas, Hans G. Pohl, Marius George Linguraru
2021 J jnl
IEEE Trans. Medical Imaging
Qi Zeng, Mohammad Honarvar, Caitlin Schneider, Shahed K. Mohammed, Julio Lobo, Emily H. T. Pang, Kirby T. Lau, Changhong Hu, James Jago, Siegfried R. Erb, Robert Rohling, Septimiu E. Salcudean
2019 conf
ISBI
Pooneh R. Tabrizi, Awais Mansoor, Juan J. Cerrolaza, Jonathan Zember, Hans G. Pohl, James Jago, Marius George Linguraru
2018 conf
Computer-Aided Diagnosis
Pooneh R. Tabrizi, Awais Mansoor, Elijah Biggs, James Jago, Marius George Linguraru
2018 conf
ISBI
Pooneh R. Tabrizi, Awais Mansoor, Juan J. Cerrolaza, James Jago, Marius George Linguraru
2016 J jnl
IEEE Trans. Medical Imaging
Juan J. Cerrolaza, Nabile M. Safdar, Elijah Biggs, James Jago, Craig A. Peters, Marius George Linguraru
2016 conf
Computer-Aided Diagnosis
Juan J. Cerrolaza, Hansel Otero, Peter Yao, Elijah Biggs, Awais Mansoor, Roberto Ardon, James Jago, Craig A. Peters, Marius George Linguraru
2015 conf
EMBC
Yinhui Deng, Weiping Liu, James Jago
2015 conf
MICCAI (3)
Juan J. Cerrolaza, Christopher Meyer, James Jago, Craig A. Peters, Marius George Linguraru
2015 conf
EMBC
Juan J. Cerrolaza, Enrico Grisan, Nabile M. Safdar, Emmarie Myers, James Jago, Craig A. Peters, Marius George Linguraru
2015 conf
EUSIPCO
Yinhui Deng, James Jago, Yanjun Gong
2014 conf
ISBI
Juan J. Cerrolaza, Nabile M. Safdar, Craig A. Peters, Emmarie Myers, James Jago, Marius George Linguraru
2012 conf
ISBI
Samuel Kadoury, Lyubomir Zagorchev, Bradford J. Wood, Aradhana Venkatesan, Jürgen Weese, James Jago, Jochen Kruecker
2012 conf
Image-Guided Procedures
Samuel Kadoury, Bradford J. Wood, Aradhana M. Venkatesan, Roberto Ardon, James Jago, Jochen Kruecker
redb/extractors/pe_extractors/pe_resources.py
← Index redb/extractors/pe_extractors/pe_resources.py python
from hashlib import sha256
import inspect
from datetime import datetime, timezone
from typing import Any

import magic
from magika import Magika
import pefile
from pefile import UnicodeStringWrapperPostProcessor

from redb.extractors.enum import Tag
from redb.extractors.pe_extractor import PEExtractor
from redb.models.dataclasses import PEResource


class PEResourceExtractor(PEExtractor):

    def __init__(
        self,
        filepath,
        log,
        exporters=None,
        index_prefix=None,
        elastic_index=None,
        known_benign=False,
        known_malicious=False,
        pe=None,
    ):
        super().__init__(
            filepath,
            log,
            exporters,
            index_prefix,
            elastic_index,
            known_benign,
            known_malicious,
            pe,
        )
        self.elastic_index = self.index_prefix + "-pe_resources"
        self.log.debug(inspect.currentframe().f_code.co_name)

    def tag(self):
        return Tag.PE_RESOURCE.value

    def _extract_resources(self):
        """
        Returns:
        resources: a list of dictionaries, one per each resources type found.
                    each dictionary the key represents the name of the content,
                    which is the value itself.
                    Empty list if no resources present.
        """
        self.log.debug(inspect.currentframe().f_code.co_name)
        resources_list = []
        try:
            if hasattr(self.pe, "DIRECTORY_ENTRY_RESOURCE"):
                for resource_type in self.pe.DIRECTORY_ENTRY_RESOURCE.entries:
                    # if resource_type.name is not None:
                    #     name = resource_type.name
                    # else:
                    #     name = pefile.RESOURCE_TYPE.get(resource_type.struct.Id)
                    # if not name:
                    #     name = resource_type.struct.Id
                    name = (
                        resource_type.name
                        if resource_type.name is not None
                        else pefile.RESOURCE_TYPE.get(resource_type.struct.Id)
                    )
                    if isinstance(name, UnicodeStringWrapperPostProcessor):
                        name = name.decode()
                    try:
                        if hasattr(resource_type, "directory"):
                            for resource_id in resource_type.directory.entries:
                                if hasattr(resource_id, "directory"):
                                    for resource_lang in resource_id.directory.entries:
                                        rsrc_data = self.pe.get_data(
                                            resource_lang.data.struct.OffsetToData,
                                            resource_lang.data.struct.Size,
                                        )
                                        file_type = magic.from_buffer(rsrc_data)
                                        magik = Magika().identify_bytes(rsrc_data).output.label

                                        rsrc_entropy = (
                                            "%.2f"
                                            % pefile.SectionStructure.entropy_H(
                                                self.pe, rsrc_data
                                            )
                                        )
                                        rsrc_sha256 = sha256(rsrc_data).hexdigest()
                                        lang = pefile.LANG.get(
                                            resource_lang.data.lang, "*unknown*"
                                        )
                                        sublang = pefile.get_sublang_name_for_lang(
                                            resource_lang.data.lang,
                                            resource_lang.data.sublang,
                                        )
                                        pe_resource = PEResource(
                                            _id=rsrc_sha256,
                                            resource_type=name,
                                            resource_entropy=rsrc_entropy,
                                            resource_sha256=rsrc_sha256,
                                            resource_filetype=file_type,
                                            resource_magika=magik,
                                            resource_language=lang,
                                            resource_rva=resource_lang.data.struct.OffsetToData,
                                            resource_size=resource_lang.data.struct.Size,
                                            resource_sub_lang=sublang,
                                        )
                                        resources_list.append(pe_resource)
                    except Exception as e:
                        self.log.warning(
                            f"Continue after Error in {self.hash.sha256}: {resource_type.name} "
                            f"Exception: {e}",
                            stack_info=True,
                        )
                        # resources_list.append({f"{e} - {resource_type.name}"})
                        continue
        except Exception as e:
            self.log.exception(
                f"Extract exports error {self.hash.sha256} Exception: {e}"
            )
        self.log.debug(f"Resource list {resources_list}")
        return resources_list

    def extract(self):
        try:
            self.log.debug(inspect.currentframe().f_code.co_name)
            resources = self._extract_resources()
            # self.export_to_elastic(resources)  # Let the exporters handle this
            return resources
        except Exception as e:
            self.log.error(f"Extract resources error {self.hash.sha256} Exception: {e}")
            return None

    def prepare_export_data(self, exporter_type: str) -> Any:
        if exporter_type == "ElasticsearchExporter":
            return self.extract()
        elif exporter_type == "ClickHouseExporter":
            resources = self.extract()
            if resources is None:
                return None
            
            data = []
            current_time = datetime.now(timezone.utc)
            
            for resource in resources:
                data.append([
                    self.sha256,                    # sha256
                    self.md5,                       # md5
                    self.sha1,                      # sha1
                    resource.resource_type,         # resource_type
                    resource.resource_entropy,      # resource_entropy
                    resource.resource_sha256,       # resource_sha256
                    resource.resource_filetype,     # resource_filetype
                    resource.resource_magika,       # resource_magika
                    resource.resource_language,     # resource_language
                    resource.resource_sub_lang,     # resource_sub_lang
                    resource.resource_size,         # resource_size
                    resource.resource_rva,          # resource_rva
                    current_time                    # analysis_date
                ])
            
            column_names = [
                'sha256', 'md5', 'sha1', 'resource_type', 'resource_entropy',
                'resource_sha256', 'resource_filetype', 'resource_magika',
                'resource_language', 'resource_sub_lang', 'resource_size',
                'resource_rva', 'analysis_date'
            ]
            
            if not data:
                return None

            column_type_names = [
                'FixedString(64)', 'FixedString(32)', 'FixedString(40)',
                'LowCardinality(Nullable(String))', 'Float64',
                'FixedString(64)', 'LowCardinality(Nullable(String))', 'LowCardinality(Nullable(String))',
                'LowCardinality(Nullable(String))', 'LowCardinality(Nullable(String))', 'UInt64',
                'UInt64', 'DateTime64(3, \'UTC\')'
            ]

            return (data, column_names, column_type_names)

    def get_clickhouse_table(self) -> str:
        return "redb_pe_resources"