James J. Chen

29 papers Journal 27Unranked 2
YearRankTypeTitle / Venue / Authors
2021 — conf
Discovering Drug-Drug Associations in the FDA Adverse Event Reporting System Database with Data Mining Approaches.
BIBM
Weizhong Zhao, Huyen Le, James J. Chen, Hesha J. Duggirala, Richard Forshee, Taxiarchis Botsis, Henry Francis, Huixiao Hong, Weida Tong, Yi-Ting Hwang, Wen Zou
2017 — conf
Best Setting of Model Parameters in Applying Topic Modeling on Textual Documents.
BCB
Wen Zou, Weizhong Zhao, James J. Chen, Roger Perkins
2016 J jnl
A novel procedure on next generation sequencing data analysis using text mining algorithm.
BMC Bioinform.
Weizhong Zhao, James J. Chen, Roger Perkins, Yuping Wang, Zhichao Liu, Huixiao Hong, Weida Tong, Wen Zou
2016 J jnl
Erratum to: A novel procedure on next generation sequencing data analysis using text mining algorithm.
BMC Bioinform.
Weizhong Zhao, James J. Chen, Roger Perkins, Yuping Wang, Zhichao Liu, Huixiao Hong, Weida Tong, Wen Zou
2016 J jnl
Use of data mining at the Food and Drug Administration.
J. Am. Medical Informatics Assoc.
Hesha J. Duggirala, Joseph M. Tonning, Ella Smith, Roselie A. Bright, John D. Baker, Robert Ball, Carlos Bell, Susan J. Bright-Ponte, Taxiarchis Botsis, Khaled Bouri, Marc Boyer, Keith Burkhart, G. Steven Condrey, James J. Chen, Stuart Chirtel, Ross W. Filice, Henry Francis, Hongying Jiang, Jonathan Levine, David Martin, Taiye Oladipo, Rene O'Neill, Lee Anne M. Palmer, Antonio Paredes, George Rochester, Deborah Sholtes, Ana Szarfman, Hui-Lee Wong, Zhiheng Xu, Taha A. Kass-Hout
2015 J jnl
A heuristic approach to determine an appropriate number of topics in topic modeling.
BMC Bioinform.
Weizhong Zhao, James J. Chen, Roger Perkins, Zhichao Liu, Weigong Ge, Yijun Ding, Wen Zou
2014 J jnl
Topic modeling for cluster analysis of large biological and medical datasets.
BMC Bioinform.
Weizhong Zhao, Wen Zou, James J. Chen
2013 J jnl
Class-imbalanced classifiers for high-dimensional data.
Briefings Bioinform.
Wei-Jiun Lin, James J. Chen
2013 J jnl
Data mining tools for Salmonella characterization: application to gel-based fingerprinting analysis.
BMC Bioinform.
Wen Zou, Hailin Tang, Weizhong Zhao, Joe Meehan, Steven L. Foley, Wei-Jiun Lin, Hung-Chia Chen, Hong Fang, Rajesh Nayak, James J. Chen
2013 J jnl
Identification of reproducible gene expression signatures in lung adenocarcinoma.
BMC Bioinform.
Tzu-Pin Lu, Eric Y. Chuang, James J. Chen
2010 J jnl
An FDA bioinformatics tool for microbial genomics research on molecular characterization of bacterial foodborne pathogens using microarrays.
BMC Bioinform.
Hong Fang, Joshua Xu, Don Ding, Scott A. Jackson, Isha R. Patel, Jonathan G. Frye, Wen Zou, Rajesh Nayak, Steven L. Foley, James J. Chen, Zhenqiang Su, Yanbin Ye, Steve Turner, Steve Harris, Guangxu Zhou, Carl Cerniglia, Weida Tong
2010 J jnl
Power and sample size estimation in microarray studies.
BMC Bioinform.
Wei-Jiun Lin, Huey-miin Hsueh, James J. Chen
2009 J jnl
A model-free ensemble method for class prediction with application to biomedical decision making.
Artif. Intell. Medicine
Ralph L. Kodell, Bruce A. Pearce, Songjoon Baek, Hojin Moon, Hongshik Ahn, John F. Young, James J. Chen
2009 J jnl
Development of biomarker classifiers from high-dimensional data.
Briefings Bioinform.
Songjoon Baek, Chen-An Tsai, James J. Chen
2009 J jnl
Multivariate analysis of variance test for gene set analysis.
Bioinform.
Chen-An Tsai, James J. Chen
2008 J jnl
Assessing batch effects of genotype calling algorithm BRLMM for the Affymetrix GeneChip Human Mapping 500 K array set using 270 HapMap samples.
BMC Bioinform.
Huixiao Hong, Zhenqiang Su, Weigong Ge, Leming M. Shi, Roger Perkins, Hong Fang, Joshua Xu, James J. Chen, Tao Han, Jim Kaput, James C. Fuscoe, Weida Tong
2007 J jnl
Classification by ensembles from random partitions of high-dimensional data.
Comput. Stat. Data Anal.
Hongshik Ahn, Hojin Moon, Melissa J. Fazzari, Noha Lim, James J. Chen, Ralph L. Kodell
2007 J jnl
Ensemble methods for classification of patients for personalized medicine with high-dimensional data.
Artif. Intell. Medicine
Hojin Moon, Hongshik Ahn, Ralph L. Kodell, Songjoon Baek, Chien-Ju Lin, James J. Chen
2007 J jnl
Gene selection with multiple ordering criteria.
BMC Bioinform.
James J. Chen, Chen-An Tsai, Shengli Tzeng, Chun-Houh Chen
2007 J jnl
Kernel estimation for adjusted p.
Comput. Stat. Data Anal.
Chen-An Tsai, James J. Chen
2007 J jnl
Reproducibility of microarray data: a further analysis of microarray quality control (MAQC) data.
BMC Bioinform.
James J. Chen, Huey-miin Hsueh, Robert R. Delongchamp, Chien-Ju Lin, Chen-An Tsai
2007 J jnl
Significance analysis of groups of genes in expression profiling studies.
Bioinform.
James J. Chen, Taewon Lee, Robert R. Delongchamp, Tao Chen, Chen-An Tsai
2005 J jnl
Cross-platform comparability of microarray technology: Intra-platform consistency and appropriate data analysis procedures are essential.
BMC Bioinform.
Leming M. Shi, Weida Tong, Hong Fang, Uwe Scherf, Jing Han, Raj K. Puri, Felix W. Frueh, Federico M. Goodsaid, Lei Guo, Zhenqiang Su, Tao Han, James C. Fuscoe, Z. Alex Xu, Tucker A. Patterson, Huixiao Hong, Qian Xie, Roger Perkins, James J. Chen, Daniel A. Casciano
2005 J jnl
Microarray scanner calibration curves: characteristics and implications.
BMC Bioinform.
Leming M. Shi, Weida Tong, Zhenqiang Su, Tao Han, Jing Han, Raj K. Puri, Hong Fang, Felix W. Frueh, Federico M. Goodsaid, Lei Guo, William S. Branham, James J. Chen, Z. Alex Xu, Stephen C. Harris, Huixiao Hong, Qian Xie, Roger Perkins, James C. Fuscoe
2005 J jnl
Probe rank approaches for gene selection in oligonucleotide arrays with a small number of replicates.
Bioinform.
Dung-Tsa Chen, James J. Chen, Seng-jaw Soong
2005 J jnl
Regression trees for analysis of count data with extra Poisson variation.
Comput. Stat. Data Anal.
Yunhee Choi, Hongshik Ahn, James J. Chen
2005 J jnl
Sample size for gene expression microarray experiments.
Bioinform.
Chen-An Tsai, Sue-Jane Wang, Dung-Tsa Chen, James J. Chen
2004 J jnl
Analysis of variance components in gene expression data.
Bioinform.
James J. Chen, Robert R. Delongchamp, Chen-An Tsai, Huey-miin Hsueh, Frank Sistare, Karol L. Thompson, Varsha G. Desai, James C. Fuscoe
2004 J jnl
Sample Size for Identifying Differentially Expressed Genes in Microarray Experiments.
J. Comput. Biol.
Sue-Jane Wang, James J. Chen