James H. Leebens-Mack

12 papers Journal 9Unranked 3
YearRankTypeTitle / Venue / Authors
2021 J jnl
Ancestral Flowering Plant Chromosomes and Gene Orders Based on Generalized Adjacencies and Chromosomal Gene Co-Occurrences.
J. Comput. Biol.
Qiaoji Xu, Lingling Jin, Yue Zhang, Xiaomeng Zhang, Chunfang Zheng, James H. Leebens-Mack, David Sankoff
2021 J jnl
The monoploid chromosome complement of reconstructed ancestral genomes in a phylogeny.
J. Bioinform. Comput. Biol.
Qiaoji Xu, Xiaomeng Zhang, Yue Zhang, Chunfang Zheng, James H. Leebens-Mack, Lingling Jin, David Sankoff
2021 J jnl
Validation of Automated Chromosome Recovery in the Reconstruction of Ancestral Gene Order.
Algorithms
Qiaoji Xu, Lingling Jin, James H. Leebens-Mack, David Sankoff
2020 — conf
RACCROCHE: Ancestral Flowering Plant Chromosomes and Gene Orders Based on Generalized Adjacencies and Chromosomal Gene Co-occurrences.
ICCABS
Qiaoji Xu, Lingling Jin, Chunfang Zheng, James H. Leebens-Mack, David Sankoff
2011 — conf
Phylogenomic Analysis of the Phenylalanine Ammonia Lyase Gene Family in Loblolly Pine (Pinus Taeda L.).
BIBM
Ujwal R. Bagal, James H. Leebens-Mack, W. Walter Lorenz, Jeffrey F. D. Dean
2011 J jnl
The Impact of Multiple Protein Sequence Alignment on Phylogenetic Estimation.
IEEE ACM Trans. Comput. Biol. Bioinform.
Li-San Wang, James H. Leebens-Mack, P. Kerr Wall, Kevin Beckmann, Claude W. dePamphilis, Tandy J. Warnow
2009 J jnl
Gene Loss under Neighborhood Selection Following Whole genome Duplication and the Reconstruction of the Ancestral Populus genome.
J. Bioinform. Comput. Biol.
Chunfang Zheng, P. Kerr Wall, James H. Leebens-Mack, Claude de Pamphilis, Victor A. Albert, David Sankoff
2009 J jnl
Towards Improved Reconstruction of Ancestral Gene Order in Angiosperm Phylogeny.
J. Comput. Biol.
David Sankoff, Chunfang Zheng, P. Kerr Wall, Claude de Pamphilis, James H. Leebens-Mack, Victor A. Albert
2008 — conf
Internal Validation of Ancestral Gene Order Reconstruction in Angiosperm Phylogeny.
RECOMB-CG
David Sankoff, Chunfang Zheng, P. Kerr Wall, Claude W. dePamphilis, James H. Leebens-Mack, Victor A. Albert
2008 J jnl
PlantTribes: a gene and gene family resource for comparative genomics in plants.
Nucleic Acids Res.
P. Kerr Wall, James H. Leebens-Mack, Kai F. Müller, Dawn Field, Naomi S. Altman, Claude W. dePamphilis
2006 J jnl
ChloroplastDB: the Chloroplast Genome Database.
Nucleic Acids Res.
Liying Cui, Narayanan Veeraraghavan, Alexander Richter, P. Kerr Wall, Robert K. Jansen, James H. Leebens-Mack, Izabela Makalowska, Claude W. dePamphilis
2004 J jnl
EST clustering error evaluation and correction.
Bioinform.
Ji-Ping Z. Wang, Bruce G. Lindsay, James H. Leebens-Mack, Liying Cui, P. Kerr Wall, Webb Colby Miller, Claude W. dePamphilis