James G. Mork - RankMe

55 papers Misc 25Journal 13Unranked 17

Year	Rank	Type	Title / Venue / Authors
2025	—	`conf`	Empirical Antonym Implementation in the UMLS SPECIALIST Lexicon. MedInfo Chris J. Lu, Amanda Payne, James G. Mork
2023	J	`jnl`	The National Library of Medicine indexer assignment dataset: A new large-scale dataset for reviewer assignment research. J. Assoc. Inf. Sci. Technol. Alastair R. Rae, James G. Mork, Dina Demner-Fushman
2023	J	`jnl`	The road from manual to automatic semantic indexing of biomedical literature: a 10 years journey. Frontiers Res. Metrics Anal. Anastasia Krithara, James G. Mork, Anastasios Nentidis, Georgios Paliouras
2021	—	`conf`	A Neural Text Ranking Approach for Automatic MeSH Indexing. CLEF (Working Notes) Alastair R. Rae, James G. Mork, Dina Demner-Fushman
2021	—	`conf`	Automatic recognition of figurative language in biomedical articles. SDU@AAAI Dina Demner-Fushman, Willie J. Rogers, James G. Mork
2021	Misc	`conf`	Hybrid Ensemble-Rule Algorithm for Improved MEDLINE® Sentence Boundary Detection. AMIA Daniel X. Le, James G. Mork, Sameer Antani
2021	Misc	`conf`	Identifying Criteria for Antonym Generation from Collocates in Corpora. AMIA Chris J. Lu, Amanda Payne, James G. Mork
2021	J	`jnl`	Proper filter usage to retrieve multiwords from the MEDLINE n-gram set: Reply to the Turki et al commentary "Enhancing filter-based parenthetic abbreviation extraction methods". J. Am. Medical Informatics Assoc. Chris J. Lu, Amanda Payne, James G. Mork
2021	Misc	`conf`	Using Deep Neural Network Binary Classifiers to Infer MeSH Publication Types. AMIA Victor Cid, James G. Mork
2020	Misc	`conf`	Automatic MeSH Indexing: Revisiting the Subheading Attachment Problem. AMIA Alastair R. Rae, David O. Pritchard, James G. Mork, Dina Demner-Fushman
2020	Misc	`conf`	Enhanced Features in the SPECIALIST Lexicon - Antonyms. AMIA Chris J. Lu, Amanda Payne, James G. Mork
2020	J	`jnl`	The Unified Medical Language System SPECIALIST Lexicon and Lexical Tools: Development and applications. J. Am. Medical Informatics Assoc. Chris J. Lu, Amanda Payne, James G. Mork
2019	Misc	`conf`	A High Recall Classifier for Selecting Articles for MEDLINE Indexing. AMIA Alastair R. Rae, Max E. Savery, James G. Mork, Dina Demner-Fushman
2019	—	`conf`	Convolutional Neural Network for Automatic MeSH Indexing. PKDD/ECML Workshops (2) Alastair R. Rae, James G. Mork, Dina Demner-Fushman
2019	Misc	`conf`	Evaluation of System for Selective Indexing Classification. AMIA Max E. Savery, Melanie Huston, James G. Mork, Olga Printseva, Susan Schmidt, Alastair R. Rae, Dina Demner-Fushman
2018	Misc	`conf`	Finding medication doses in the literature. AMIA Dina Demner-Fushman, James G. Mork, Willie J. Rogers, Sonya E. Shooshan, Laritza M. Rodriguez, Alan R. Aronson
2018	Misc	`conf`	Increasing UMLS Coverage and Reducing Ambiguity via Automated Creation of Synonymous Terms. AMIA François-Michel Lang, James G. Mork, Dina Demner-Fushman, Alan R. Aronson
2017	J	`jnl`	12 years on - Is the NLM medical text indexer still useful and relevant? J. Biomed. Semant. James G. Mork, Alan R. Aronson, Dina Demner-Fushman
2016	Misc	`conf`	Resolving Hierarchical Ambiguity in Indexing Recommendations. AMIA James G. Mork, Dina Demner-Fushman
2015	Misc	`conf`	Extracting Characteristics of the Study Subjects from Full-Text Articles. AMIA Dina Demner-Fushman, James G. Mork
2015	J	`jnl`	Feature engineering for MEDLINE citation categorization with MeSH. BMC Bioinform. Antonio Jimeno-Yepes, Laura Plaza, Jorge Carrillo de Albornoz, James G. Mork, Alan R. Aronson
2014	—	`conf`	Recent Enhancements to the NLM Medical Text Indexer. CLEF (Working Notes) James G. Mork, Dina Demner-Fushman, Susan Schmidt, Alan R. Aronson
2014	Misc	`conf`	Vocabulary Density Method for Customized Indexing of MEDLINE Journals. AMIA James G. Mork, Dina Demner-Fushman, Susan Schmidt, Alan R. Aronson
2013	Misc	`conf`	Comparison and combination of several MeSH indexing approaches. AMIA Antonio Jimeno-Yepes, James G. Mork, Dina Demner-Fushman, Alan R. Aronson
2013	J	`jnl`	GeneRIF indexing: sentence selection based on machine learning. BMC Bioinform. Antonio Jimeno-Yepes, J. Caitlin Sticco, James G. Mork, Alan R. Aronson
2013	—	`conf`	Identifying Publication Types Using Machine Learning. BioASQ@CLEF Antonio Jimeno-Yepes, James G. Mork, Alan R. Aronson
2013	J	`jnl`	MeSH indexing based on automatically generated summaries. BMC Bioinform. Antonio José Jimeno-Yepes, Laura Plaza, James G. Mork, Alan R. Aronson, Alberto Díaz
2013	Misc	`conf`	Mining MEDLINE for problems associated with vitamin D. AMIA Dina Demner-Fushman, James G. Mork, Alan R. Aronson
2013	—	`conf`	The NLM Medical Text Indexer System for Indexing Biomedical Literature. BioASQ@CLEF James G. Mork, Antonio Jimeno-Yepes, Alan R. Aronson
2013	—	`conf`	Using the Argumentative Structure of Scientific Literature to Improve Information Access. BioNLP@ACL Antonio Jimeno-Yepes, James G. Mork, Alan R. Aronson
2012	J	`jnl`	A One-Size-Fits-All Indexing Method Does Not Exist: Automatic Selection Based on Meta-Learning. J. Comput. Sci. Eng. Antonio Jimeno-Yepes, James G. Mork, Dina Demner-Fushman, Alan R. Aronson
2012	—	`conf`	MEDLINE MeSH indexing: lessons learned from machine learning and future directions. IHI Antonio Jimeno-Yepes, James G. Mork, Bartlomiej Wilkowski, Dina Demner-Fushman, Alan R. Aronson
2012	—	`conf`	NLM at TREC 2012 Medical Records Track. TREC Dina Demner-Fushman, Swapna Abhyankar, Antonio Jimeno-Yepes, Russell F. Loane, François-Michel Lang, James G. Mork, Nicolas Ide, Alan R. Aronson
2012	Misc	`conf`	Structured Abstracts in MEDLINE: Implementation Based on a Retrospective Cohort Study. AMIA Anna Ripple, Lou Knecht, John Rozier, James G. Mork
2010	J	`jnl`	Extracting Rx information from clinical narrative. J. Am. Medical Informatics Assoc. James G. Mork, Olivier Bodenreider, Dina Demner-Fushman, Rezarta Islamaj Dogan, François-Michel Lang, Zhiyong Lu, Aurélie Névéol, Lee B. Peters, Sonya E. Shooshan, Alan R. Aronson
2010	J	`jnl`	UMLS content views appropriate for NLP processing of the biomedical literature vs. clinical text. J. Biomed. Informatics Dina Demner-Fushman, James G. Mork, Sonya E. Shooshan, Alan R. Aronson
2009	J	`jnl`	A recent advance in the automatic indexing of the biomedical literature. J. Biomed. Informatics Aurélie Névéol, Sonya E. Shooshan, Susanne M. Humphrey, James G. Mork, Alan R. Aronson
2009	J	`jnl`	Comment on 'MeSH-up: effective MeSH text classification for improved document retrieval'. Bioinform. Aurélie Névéol, James G. Mork, Alan R. Aronson
2008	Misc	`conf`	Methodology for Creating UMLS Content Views Appropriate for Biomedical Natural Language Processing. AMIA Alan R. Aronson, James G. Mork, Aurélie Névéol, Sonya E. Shooshan, Dina Demner-Fushman
2007	—	`conf`	Automatic Indexing of Specialized Documents: Using Generic vs. Domain-Specific Document Representations. BioNLP@ACL Aurélie Névéol, James G. Mork, Alan R. Aronson
2007	—	`conf`	Combining Resources to Find Answers to Biomedical Questions. TREC Dina Demner-Fushman, Susanne M. Humphrey, Nicholas C. Ide, Russell F. Loane, James G. Mork, Patrick Ruch, Miguel E. Ruiz, Lawrence H. Smith, W. John Wilbur, Alan R. Aronson
2007	Misc	`conf`	Fine-Grained Indexing of the Biomedical Literature: MeSH Subheading Attachment for a MEDLINE Indexing Tool. AMIA Aurélie Névéol, Sonya E. Shooshan, James G. Mork, Alan R. Aronson
2007	—	`conf`	From indexing the biomedical literature to coding clinical text: experience with MTI and machine learning approaches. BioNLP@ACL Alan R. Aronson, Olivier Bodenreider, Dina Demner-Fushman, Kin Wah Fung, Vivian K. Lee, James G. Mork, Aurélie Névéol, Lee B. Peters, Willie J. Rogers
2005	Misc	`conf`	Evaluation of French and English MeSH Indexing Systems with a Parallel Corpus. AMIA Aurélie Névéol, James G. Mork, Alan R. Aronson, Stéfan Jacques Darmoni
2004	—	`conf`	Application of a Medical Text Indexer to an Online Dermatology Atlas. MedInfo George R. Kim, Alan R. Aronson, James G. Mork, Bernard A. Cohen, Christoph U. Lehmann
2004	—	`conf`	Knowledge-Intensive and Statistical Approaches to the Retrieval and Annotation of Genomics MEDLINE Citations. TREC Alan R. Aronson, Susanne M. Humphrey, Nicholas C. Ide, Won Kim, Russell F. Loane, James G. Mork, Lawrence H. Smith, Lorraine K. Tanabe, W. John Wilbur, Natalie Xie, Dina Demner-Fushman, Hongfang Liu
2004	—	`conf`	The NLM Indexing Initiative's Medical Text Indexer. MedInfo Alan R. Aronson, James G. Mork, Clifford W. Gay, Susanne M. Humphrey, Willie J. Rogers
2003	Misc	`conf`	Gene Indexing: Characterization and Analysis of NLM's GeneRIFs. AMIA Joyce A. Mitchell, Alan R. Aronson, James G. Mork, Lillian C. Folk, Susanne M. Humphrey, Janice M. Ward
2003	—	`conf`	Methods for Accurate Retrieval of MEDLINE Citations in Functional Genomics. TREC Mehmet Kayaalp, Alan R. Aronson, Susanne M. Humphrey, Nicholas C. Ide, Lorraine K. Tanabe, Lawrence H. Smith, Dina Demner-Fushman, Russell F. Loane, James G. Mork, Olivier Bodenreider
2002	Misc	`conf`	Finding UMLS Metathesaurus concepts in MEDLINE. AMIA Suresh Srinivasan, Thomas C. Rindflesch, William T. Hole, Alan R. Aronson, James G. Mork
2001	Misc	`conf`	Developing a test collection for biomedical word sense disambiguation. AMIA Marc Weeber, James G. Mork, Alan R. Aronson
2000	Misc	`conf`	Text-based discovery in biomedicine: the architecture of the DAD-system. AMIA Marc Weeber, Henny Klein, Alan R. Aronson, James G. Mork, Lolkje T. W. de Jong-van den Berg, Rein Vos
2000	Misc	`conf`	The NLM Indexing Initiative. AMIA Alan R. Aronson, Olivier Bodenreider, Florence Chang, Susanne M. Humphrey, James G. Mork, Stuart J. Nelson, Thomas C. Rindflesch, W. John Wilbur
1999	Misc	`conf`	Analysis of biomedical text for chemical names: a comparison of three methods. AMIA W. John Wilbur, George F. Hazard Jr., Guy Divita, James G. Mork, Alan R. Aronson, Allen C. Browne
1999	Misc	`conf`	Automated Assignment of Medical Subject Headings. AMIA Stuart J. Nelson, Alan R. Aronson, Tamas E. Doszkocs, W. John Wilbur, Olivier Bodenreider, H. Florence Chang, James G. Mork, Alexa T. McCray