James G. Lyons

19 papers A 2Misc 1Journal 13Unranked 3
YearRankTypeTitle / Venue / Authors
2026 J jnl
PLoS Comput. Biol.
Neda Khodabakhsh Joniani, David Martínez-Martín, Peter S. Kim, James G. Lyons
2018 J jnl
J. Comput. Chem.
Rhys Heffernan, Kuldip K. Paliwal, James G. Lyons, Jaswinder Singh, Yuedong Yang, Yaoqi Zhou
2016 J jnl
Bioinform.
Rhys Heffernan, Abdollah Dehzangi, James G. Lyons, Kuldip K. Paliwal, Alok Sharma, Jihua Wang, Abdul Sattar, Yaoqi Zhou, Yuedong Yang
2015 J jnl
Int. J. Data Min. Bioinform.
Abdollah Dehzangi, Alok Sharma, James G. Lyons, Kuldip K. Paliwal, Abdul Sattar
2015 J jnl
BMC Bioinform.
Abdollah Dehzangi, Sohrab Sohrabi, Rhys Heffernan, Alok Sharma, James G. Lyons, Kuldip K. Paliwal, Abdul Sattar
2014 J jnl
IEEE ACM Trans. Comput. Biol. Bioinform.
Abdollah Dehzangi, Kuldip K. Paliwal, James G. Lyons, Alok Sharma, Abdul Sattar
2014 J jnl
BMC Bioinform.
Kuldip K. Paliwal, Alok Sharma, James G. Lyons, Abdollah Dehzangi
2014 J jnl
J. Comput. Chem.
James G. Lyons, Abdollah Dehzangi, Rhys Heffernan, Alok Sharma, Kuldip K. Paliwal, Abdul Sattar, Yaoqi Zhou, Yuedong Yang
2014 J jnl
BMC Genom.
Abdollah Dehzangi, Kuldip K. Paliwal, James G. Lyons, Alok Sharma, Abdul Sattar
2014 J jnl
J. Adv. Comput. Intell. Intell. Informatics
Harsh Saini, Gaurav Raicar, Alok Sharma, Sunil Pranit Lal, Abdollah Dehzangi, Rajeshkannan Ananthanarayanan, James G. Lyons, Neela Biswas, Kuldip K. Paliwal
2013 J jnl
BMC Bioinform.
Alok Sharma, Kuldip K. Paliwal, Abdollah Dehzangi, James G. Lyons, Seiya Imoto, Satoru Miyano
2013 conf
PRIB
Abdollah Dehzangi, Kuldip K. Paliwal, James G. Lyons, Alok Sharma, Abdul Sattar
2013 conf
PRIB
Abdollah Dehzangi, Kuldip K. Paliwal, James G. Lyons, Alok Sharma, Abdul Sattar
2013 conf
Australasian Conference on Artificial Intelligence
Abdollah Dehzangi, Kuldip K. Paliwal, Alok Sharma, James G. Lyons, Abdul Sattar
2009 Misc conf
ICASSP
Stephen So, Kamil K. Wójcicki, James G. Lyons, Anthony P. Stark, Kuldip K. Paliwal
2009 J jnl
IEEE Signal Process. Lett.
Kuldip K. Paliwal, Benjamin J. Shannon, James G. Lyons, Kamil K. Wójcicki
2008 A conf
INTERSPEECH
James G. Lyons, Kuldip K. Paliwal
2008 J jnl
IEEE Signal Process. Lett.
Kamil K. Wójcicki, Mitar Milacic, Anthony P. Stark, James G. Lyons, Kuldip K. Paliwal
2008 A conf
INTERSPEECH
Anthony P. Stark, Kamil K. Wójcicki, James G. Lyons, Kuldip K. Paliwal
tests/unit/test_decompile_utils.py
← Index tests/unit/test_decompile_utils.py python
"""Unit tests for decompiler utility modules:
- bninja/utils/hashes.py
- bninja/utils/json_encoder.py
- bninja/analysis/low_level_normalization.py
"""
import hashlib
import json
import pytest


# ============================================================================
# 1a. hashes.py
# ============================================================================

from redb.extractors.decompiler.bninja.utils.hashes import (
    calculate_md5,
    calculate_sha256,
    calculate_tlsh,
)


class TestCalculateMD5:
    def test_calculate_md5_known_value(self):
        expected = hashlib.md5(b"test").hexdigest()
        assert calculate_md5("test") == expected

    def test_calculate_md5_empty(self):
        expected = hashlib.md5(b"").hexdigest()
        assert calculate_md5("") == expected


class TestCalculateSHA256:
    def test_calculate_sha256_known_value(self):
        expected = hashlib.sha256(b"hello world").hexdigest()
        assert calculate_sha256("hello world") == expected

    def test_calculate_sha256_empty_string(self):
        result = calculate_sha256("")
        assert len(result) == 64
        assert all(c in "0123456789abcdef" for c in result)


class TestCalculateTLSH:
    def test_calculate_tlsh_long_data(self):
        # TLSH requires >= 50 bytes
        data = "A" * 100
        result = calculate_tlsh(data)
        assert result is not None
        assert isinstance(result, str)

    def test_calculate_tlsh_short_data(self):
        data = "A" * 10
        result = calculate_tlsh(data)
        assert result is None

    def test_calculate_tlsh_deterministic(self):
        data = "x" * 200
        assert calculate_tlsh(data) == calculate_tlsh(data)



# ============================================================================
# 1b. json_encoder.py
# ============================================================================

from redb.extractors.decompiler.bninja.utils.json_encoder import BinaryNinjaEncoder


class TestBinaryNinjaEncoder:
    def test_encode_value_confidence_object(self):
        obj = type("VC", (), {"value": 42, "confidence": 255})()
        result = json.dumps(obj, cls=BinaryNinjaEncoder)
        assert json.loads(result) == 42

    def test_encode_str_fallback(self):
        obj = type("Obj", (), {"__str__": lambda self: "custom_repr"})()
        result = json.dumps(obj, cls=BinaryNinjaEncoder)
        assert json.loads(result) == "custom_repr"

    def test_encode_normal_types(self):
        data = {"a": 1, "b": [2, 3], "c": "hello"}
        result = json.dumps(data, cls=BinaryNinjaEncoder)
        assert json.loads(result) == data

    def test_encode_set_via_str(self):
        # Python sets have __str__, so BinaryNinjaEncoder converts them
        # to their string repr instead of raising TypeError.
        result = json.dumps(set([1, 2, 3]), cls=BinaryNinjaEncoder)
        parsed = json.loads(result)
        assert isinstance(parsed, str)
        assert "1" in parsed


# ============================================================================
# 1c. low_level_normalization.py
# ============================================================================

from redb.extractors.decompiler.bninja.analysis.low_level_normalization import (
    LowLevelNormalization,
)


class MockIL:
    """Mock IL node for normalization tests."""
    def __init__(self, operation, operands=None):
        self.operation = operation
        self.operands = operands or []


class TestLowLevelNormalization:
    def setup_method(self):
        self.normalizer = LowLevelNormalization()

    def test_normalize_single_instruction(self):
        node = MockIL(operation=5)
        result = self.normalizer.normalize_instruction_all_levels(node)
        assert result == [5]

    def test_normalize_nested_operands(self):
        child1 = MockIL(operation=10)
        child2 = MockIL(operation=20)
        root = MockIL(operation=1, operands=[child1, child2])
        result = self.normalizer.normalize_instruction_all_levels(root)
        assert result == [1, 10, 20]

    def test_normalize_empty_operands(self):
        node = MockIL(operation=42, operands=[])
        result = self.normalizer.normalize_instruction_all_levels(node)
        assert result == [42]

    def test_normalize_list_operands(self):
        # Simulates phi-node style list operands
        inner = MockIL(operation=99)
        node = MockIL(operation=7, operands=[[inner]])
        result = self.normalizer.normalize_instruction_all_levels(node)
        assert result == [7, 99]

    def test_normalize_none_input(self):
        result = self.normalizer.normalize_instruction_all_levels(None)
        assert result == []