James F. Griffith

16 papers Misc 1Journal 8Unranked 7
YearRankTypeTitle / Venue / Authors
2026 J jnl
Neural Networks
Siyue Li, Yongcheng Yao, Junru Zhong, Shutian Zhao, Fan Xiao, Michael Tim-Yun Ong, Kevin Ki-Wai Ho, James F. Griffith, Yudong Zhang, Shuihua Wang, Jin Hong, Weitian Chen
2022 J jnl
CoRR
Shutian Zhao, Donal G. Cahill, Siyue Li, Fan Xiao, Thierry Blu, James F. Griffith, Weitian Chen
2022 J jnl
Comput. Biol. Medicine
Shutian Zhao, Donal G. Cahill, Siyue Li, Fan Xiao, Thierry Blu, James F. Griffith, Weitian Chen
2022 J jnl
CoRR
Junru Zhong, Yongcheng Yao, Donal G. Cahill, Fan Xiao, Siyue Li, Jack Lee, Kevin Ki-Wai Ho, Michael Tim-Yun Ong, James F. Griffith, Weitian Chen
2017 J jnl
Comput. Medical Imaging Graph.
Junbin Huang, He Liu, Defeng Wang, James F. Griffith, Lin Shi
2015 conf
EMBC
Yang Chen, Heather Ting Ma, Li Liang, Chaoyang Zhang, James F. Griffith, Ping Chung Leung
2014 conf
EMBC
Heather T. Ma, Rong Ren, Yang Chen, James F. Griffith, Ping Chung Leung, Pu Zhang
2014 conf
EMBC
Heather T. Ma, James F. Griffith, Chenfei Ye, David Ka Wai Yeung, Xu Xing, Ping Chung Leung, Jing Yuan
2013 conf
EMBC
Heather Ting Ma, Haiyan Lv, James F. Griffith, Jing Yuan, Ping Chung Leung
2012 conf
EMBC
Heather T. Ma, Haiyan Lv, James F. Griffith, Alvin F. W. Li, David Ka Wai Yeung, Jason Leung, Ping Chung Leung, Jing Yuan
2012 conf
BHI
Heather Ting Ma, Haiyan Lv, Alvin F. W. Li, James F. Griffith, Yixiang Wang, Anthony Wai Leung Kwok, Ping Chung Leung
2012 conf
EMBC
Heather T. Ma, James F. Griffith, Xinxin Zhao, Haiyan Lv, David Ka Wai Yeung, Ping Chung Leung
2011 Misc conf
ICMLC
Yong-Juan Zhao, Lin Shi, Jia-Chun Li, James F. Griffith, Anil T. Ahuja, Pheng-Ann Heng
2010 J jnl
IEEE Trans. Inf. Technol. Biomed.
Lin Shi, Defeng Wang, Vivian W. Y. Hung, Benson H. Y. Yeung, James F. Griffith, Winnie C. W. Chu, Pheng-Ann Heng, Jack Chun Yiu Cheng, Ling Qin
2009 J jnl
Medical Biol. Eng. Comput.
Heather Ting Ma, James F. Griffith, Zhengyi Yang, Anthony Wai Leung Kwok, Ping Chung Leung, Raymond Y. W. Lee
2008 J jnl
Medical Biol. Eng. Comput.
Heather Ting Ma, Zhengyi Yang, James F. Griffith, Ping Chung Leung, Raymond Y. W. Lee
redb/extractors/pe_extractors/pe_signature_old.py
← Index redb/extractors/pe_extractors/pe_signature_old.py python
import inspect
import pefile

from hashlib import md5, sha1, sha256

from asn1crypto import cms, pem, x509, core

from redb.extractors.enum import Tag
from redb.extractors.pe_extractor import PEExtractor
from redb.models.dataclasses import PECertificate, PESigner


class PESignatureExtractor(PEExtractor):
    """
    RFC 3161 - Internet X.509 Public Key Infrastructure Time-Stamp Protocol (TSP)
    Section 2.4.2 defines the TSTInfo structure.
    https://tools.ietf.org/html/rfc3161#section-2.4.2

    Microsoft Authenticode Time Stamping Specification
    https://download.microsoft.com/download/9/c/5/9c5b2167-8017-4bae-9fde-d599bac8184a/Authenticode_PE.docx
    """

    def __init__(
        self,
        filepath,
        log,
        index_prefix=None,
        elastic_index=None,
        known_benign=False,
        known_malicious=False,
        pe=None,
    ):
        super().__init__(
            filepath,
            log,
            index_prefix,
            elastic_index,
            known_benign,
            known_malicious,
            pe,
        )
        self.elastic_index = self.index_prefix + "-pe_signature"
        self.log.debug(inspect.currentframe().f_code.co_name)

    def tag(self):
        return Tag.PE_SIGNATURE.value

    @staticmethod
    def _extract_certificate_info(cert_data):
        # self.log.debug(inspect.currentframe().f_code.co_name)

        certificate = x509.Certificate.load(cert_data)
        certificate_serial_number = format(certificate.serial_number, "x").upper()
        grouped_serial_number = ":".join(
            [
                certificate_serial_number[i : i + 2]
                for i in range(0, len(certificate_serial_number), 2)
            ]
        )
        return PECertificate(
            _id=format(certificate.serial_number, "x").upper(),
            certificate_serial_number=grouped_serial_number,
            certificate_issuer=certificate.issuer.human_friendly,
            certificate_subject=certificate.subject.human_friendly,
            certificate_valid_from=certificate["tbs_certificate"]["validity"][
                "not_before"
            ].native.strftime("%Y-%m-%d %H:%M:%S"),
            certificate_valid_to=certificate["tbs_certificate"]["validity"][
                "not_after"
            ].native.strftime("%Y-%m-%d %H:%M:%S"),
            certificate_thumbprint=sha1(cert_data).hexdigest().upper(),
            certificate_md5=md5(cert_data).hexdigest().upper(),
            certificate_sha256=sha256(cert_data).hexdigest().upper(),
        )

    @staticmethod
    def _parse_microsoft_time_stamp(ts_token):
        class TSTInfo(core.Sequence):
            _fields = [
                ("version", core.Integer),
                ("policy_id", core.ObjectIdentifier),
                ("message_imprint", core.Sequence),
                ("serial_number", core.Integer),
                ("gen_time", core.GeneralizedTime),
                ("accuracy", core.Sequence, {"optional": True}),
                ("ordering", core.Boolean, {"optional": True}),
                ("nonce", core.Integer, {"optional": True}),
                ("tsa", core.Sequence, {"optional": True}),
                ("extensions", core.Sequence, {"optional": True}),
            ]

        # The content should be SignedData
        signed_data = ts_token["content"]

        # The actual timestamp should be in the encapContentInfo
        encap_content_info = signed_data["encap_content_info"]
        tst_info = TSTInfo.load(encap_content_info["content"])

        # Extract the genTime field from TSTInfo, type(genTime): <class 'datetime.datetime'>
        gen_time = tst_info["gen_time"].native

        return gen_time

    def _extract_signer_info(self, signer):
        self.log.debug(inspect.currentframe().f_code.co_name)
        signing_time = None

        for attr_set in [signer["signed_attrs"], signer["unsigned_attrs"]]:
            if attr_set:
                for attribute in attr_set:
                    attr_type = attribute["type"].dotted
                    if attr_type == "1.2.840.113549.1.9.5":  # signingTime
                        signing_time = attribute["values"][0].native
                        break
                    elif (
                        attr_type == "1.3.6.1.4.1.311.3.2.1"
                        or attr_type == "1.3.6.1.4.1.311.3.3.1"
                    ):  # microsoft_time_stamp_token
                        try:
                            ts_token = attribute["values"][0].native
                            signing_time = self._parse_microsoft_time_stamp(ts_token)
                            self.log.debug(
                                f"Signing Time from Microsoft Time Stamp Token: {signing_time}"
                            )
                        except Exception as e:
                            self.log.error(
                                f"Error parsing Microsoft Time Stamp Token: {e}"
                            )
                            self.log.error("Token structure:", attribute["values"][0])
                    elif attr_type == "1.2.840.113549.1.9.6":  # counterSignature
                        counter_sig_values = attribute["values"]
                        for counter_sig_value in counter_sig_values:
                            try:
                                counter_sig_info = cms.SignerInfo.load(
                                    counter_sig_value.native
                                )
                                cs_signed_attrs = counter_sig_info["signed_attrs"]
                                for cs_attr in cs_signed_attrs:
                                    cs_attr_type = cs_attr["type"].dotted
                                    if (
                                        cs_attr_type == "1.2.840.113549.1.9.5"
                                    ):  # signingTime
                                        signing_time = cs_attr["values"][0].native
                                        self.log.debug(
                                            "Signing Time (from countersignature):",
                                            signing_time,
                                        )
                                        break
                                if signing_time:
                                    break
                            except Exception as e:
                                self.log.error(
                                    f"Error processing countersignature: {e}"
                                )
                    if signing_time:
                        break
            if signing_time:
                break
        signer_serial_number = format(
            signer["sid"].native["serial_number"], "x"
        ).upper()
        grouped_serial_number = " ".join(
            [
                signer_serial_number[i : i + 2]
                for i in range(0, len(signer_serial_number), 2)
            ]
        )
        return PESigner(
            # this is to avoid duplicate _id with the Signer certificate used to sign as they are in the same ES index
            _id=format(signer["sid"].native["serial_number"], "x").upper()
            + signer["digest_algorithm"]["algorithm"].native,
            signer_serial_number=grouped_serial_number,
            signer_digest_algorithm=signer["digest_algorithm"]["algorithm"].native,
            signer_signature_algorithm=signer["signature_algorithm"][
                "algorithm"
            ].native,
            signing_time=(
                signing_time.strftime("%Y-%m-%d %H:%M:%S") if signing_time else None
            ),
            # "countersigners": extract_countersigners(signer), # TODO: Implement this
        )

    def _extract_signature_info(self):
        self.log.debug(inspect.currentframe().f_code.co_name)
        address = self.pe.OPTIONAL_HEADER.DATA_DIRECTORY[
            pefile.DIRECTORY_ENTRY["IMAGE_DIRECTORY_ENTRY_SECURITY"]
        ].VirtualAddress
        size = self.pe.OPTIONAL_HEADER.DATA_DIRECTORY[
            pefile.DIRECTORY_ENTRY["IMAGE_DIRECTORY_ENTRY_SECURITY"]
        ].Size

        addr_8 = address + 8
        signature_data = bytes(
            self.pe.write()[addr_8 : addr_8 + size]  # noqa E203
        )  # Ensure this is a bytes object
        if pem.detect(signature_data):
            signature_data = pem.unarmor(signature_data)

        content_info = cms.ContentInfo.load(signature_data)
        signed_data = content_info["content"]

        certificates = signed_data["certificates"]
        signers = signed_data["signer_infos"]

        certificates_list = []
        for cert in certificates:
            cert_info = self._extract_certificate_info(cert.chosen.dump())
            certificates_list.append(cert_info)

        signer_info_list = []
        for signer in signers:
            signer_info = self._extract_signer_info(signer)
            signer_info_list.append(signer_info)

        return certificates_list, signer_info_list

    def extract(self):
        try:
            self.log.debug(inspect.currentframe().f_code.co_name)
            if self._is_signed():
                certificates_list, signers_list = self._extract_signature_info()
                # self.export_to_elastic([PECodeSigning(certificates_list, signers_list)])
                self.export_to_elastic(certificates_list, Tag.PE_CERTIFICATE.value)
                self.export_to_elastic(signers_list, Tag.PE_SIGNER.value)
            return True
        except Exception as e:
            self.log.error(f"Error extracting PE Signature: {e}")
            return None