James F. Greenleaf

48 papers A* 1A 1B 2C 1Misc 1Journal 28Unranked 14
YearRankTypeTitle / Venue / Authors
2018 J jnl
IEEE Trans. Medical Imaging
Daniel C. Mellema, Pengfei Song, Randall R. Kinnick, Joshua D. Trzasko, Matthew W. Urban, James F. Greenleaf, Armando Manduca, Shigao Chen
2017 J jnl
Medical Biol. Eng. Comput.
Bo Qiang, John C. Brigham, Robert J. McGough, James F. Greenleaf, Matthew W. Urban
2016 J jnl
IEEE Trans. Medical Imaging
Daniel C. Mellema, Pengfei Song, Randall R. Kinnick, Matthew W. Urban, James F. Greenleaf, Armando Manduca, Shigao Chen
2015 J jnl
IEEE Trans. Medical Imaging
Mohammad Mehrmohammadi, Pengfei Song, Duane D. Meixner, Robert T. Fazzio, Shigao Chen, James F. Greenleaf, Mostafa Fatemi, Azra Alizad
2014 J jnl
IEEE Trans. Medical Imaging
Heng Zhao, Pengfei Song, Duane D. Meixner, Randall R. Kinnick, Matthew R. Callstrom, William Sanchez, Matthew W. Urban, Armando Manduca, James F. Greenleaf, Shigao Chen
2013 J jnl
IEEE Trans. Medical Imaging
Pengfei Song, Matthew W. Urban, Armando Manduca, Heng Zhao, James F. Greenleaf, Shigao Chen
2013 J jnl
IEEE Trans. Medical Imaging
Pengfei Song, Heng Zhao, Matthew W. Urban, Armando Manduca, Sorin V. Pislaru, Randall R. Kinnick, Cristina Pislaru, James F. Greenleaf, Shigao Chen
2013 conf
EMBC
Ivan Z. Nenadic, Mohammad Mehrmohammadi, Matthew W. Urban, Azra Alizad, James F. Greenleaf, Mostafa Fatemi
2013 J jnl
BMC Medical Imaging
Azra Alizad, Matthew W. Urban, John C. Morris, Carl C. Reading, Randall R. Kinnick, James F. Greenleaf, Mostafa Fatemi
2013 J jnl
IEEE Trans. Medical Imaging
Matthew W. Urban, Cristina Pislaru, Ivan Z. Nenadic, Randall R. Kinnick, James F. Greenleaf
2012 J jnl
IEEE Trans. Medical Imaging
Pengfei Song, Heng Zhao, Armando Manduca, Matthew W. Urban, James F. Greenleaf, Shigao Chen
2011 J jnl
IEEE Trans. Biomed. Eng.
Carolina Amador, Matthew W. Urban, Shigao Chen, Qingshan Chen, Kai-Nan An, James F. Greenleaf
2011 J jnl
IEEE Trans. Biomed. Eng.
Farid G. Mitri, Matthew W. Urban, Mostafa Fatemi, James F. Greenleaf
2008 conf
ISBI
Mambidzeni Madzivire, Christopher Riederer, James F. Greenleaf
2008 J jnl
IEEE Trans. Biomed. Eng.
Farid G. Mitri, Brian J. Davis, Azra Alizad, James F. Greenleaf, Torrence M. Wilson, Lance A. Mynderse, Mostafa Fatemi
2007 J jnl
IEEE Trans. Medical Imaging
Xiaoming Zhang, M. Zeraati, Randall R. Kinnick, James F. Greenleaf, Mostafa Fatemi
2006 J jnl
IEEE Trans. Medical Imaging
Matthew W. Urban, Glauber T. Silva, Mostafa Fatemi, James F. Greenleaf
2005 J jnl
IEEE Trans. Medical Imaging
Farid G. Mitri, James F. Greenleaf, Mostafa Fatemi
2005 conf
SIP
Azra Alizad, James F. Greenleaf, Mostafa Fatemi
2004 conf
ISBI
Xiaoming Zhang, Mostafa Fatemi, James F. Greenleaf
2004 conf
SIBGRAPI
Glauber T. Silva, Alejandro César Frery, Eliana S. de Almeida, Shigao Chen, Mostafa Fatemi, James F. Greenleaf
2004 J jnl
IEEE Trans. Medical Imaging
Azra Alizad, Lester E. Wold, James F. Greenleaf, Mostafa Fatemi
2004 J jnl
IEEE Trans. Medical Imaging
Azra Alizad, Mostafa Fatemi, Lester E. Wold, James F. Greenleaf
2004 conf
ECCV Workshops CVAMIA and MMBIA
James F. Greenleaf, Mostafa Fatemi, Marek Belohlavek
2003 J jnl
Proc. IEEE
Mostafa Fatemi, Armando Manduca, James F. Greenleaf
2002 conf
ISBI
Armando Manduca, Travis E. Oliphant, M. Alex Dresner, David S. Lake, James F. Greenleaf, Richard L. Ehman
2002 conf
ISBI
Marek Belohlavek, T. Asanuma, T. Kierulf, Mostafa Fatemi, James F. Greenleaf
2002 J jnl
IEEE Trans. Medical Imaging
Mostafa Fatemi, Lester E. Wold, Azra Alizad, James F. Greenleaf
2002 conf
ISBI
Xiaoming Zhang, Mostafa Fatemi, James F. Greenleaf
2001 J jnl
Medical Image Anal.
Armando Manduca, Travis E. Oliphant, M. Alex Dresner, J. L. Mahowald, Scott A. Kruse, E. Amromin, Joel P. Felmlee, James F. Greenleaf, Richard L. Ehman
2001 C conf
BIBE
Mostafa Fatemi, James F. Greenleaf
2001 J jnl
IEEE Trans. Medical Imaging
Hao Xiaohui, C. J. Bruce, Cristina Pislaru, James F. Greenleaf
1999 conf
ICIP (2)
Paul G. Krause, Ahmed H. Tewfik, James F. Greenleaf
1998 B conf
Image Processing
Armando Manduca, Vinayak Dutt, David T. Borup, Raja Muthupillai, James F. Greenleaf, Richard L. Ehman
1998 A conf
MICCAI
Armando Manduca, Vinayak Dutt, David T. Borup, Raja Muthupillai, Richard L. Ehman, James F. Greenleaf
1997 J jnl
IEEE Trans. Neural Networks
Yi Zheng, James F. Greenleaf, John J. Gisvold
1996 J jnl
IEEE Trans. Medical Imaging
Vinayak Dutt, James F. Greenleaf
1996 conf
VBC
Marek Belohlavek, Armando Manduca, Thomas Behrenbeck, James B. Seward, James F. Greenleaf
1996 B conf
Image Processing
Armando Manduca, Raja Muthupillai, Phillip J. Rossman, James F. Greenleaf, Richard L. Ehman
1996 conf
ICIP (3)
Armando Manduca, Raja Muthupillai, Phillip J. Rossman, James F. Greenleaf, Richard L. Ehman
1996 J jnl
IEEE Trans. Neural Networks
Yi Zheng, James F. Greenleaf
1996 conf
VBC
Armando Manduca, Raja Muthupillai, Phillip J. Rossman, James F. Greenleaf, Richard L. Ehman
1995 Misc conf
ICASSP
Mahmoud E. Allam, James F. Greenleaf
1994 conf
VBC
Marek Belohlavek, David A. Foley, James B. Seward, James F. Greenleaf
1993 J jnl
IEEE Trans. Medical Imaging
Jian-yu Lu, Tai-Kyong Song, Randall R. Kinnick, James F. Greenleaf
1990 J jnl
Pattern Recognit. Lett.
A. Chu, C. M. Sehgal, James F. Greenleaf
1988 J jnl
Proc. IEEE
Hugh A. Mccann, Joseph C. Sharp, Thomas M. Kinter, Christopher Nelll Mcewan, Christian Barillot, James F. Greenleaf
1976 A* conf
SIGGRAPH
Richard A. Robb, Erik L. Ritman, James F. Greenleaf, Ralph E. Sturm, Gabor T. Herman, Peter A. Chevalier, Hsun K. Liu, Earl H. Wood
tests/integration/test_base_extractor.py
← Index tests/integration/test_base_extractor.py python
"""
Integration tests for the base Extractor class.
"""
import pytest
import hashlib
import math
from unittest.mock import Mock, patch, MagicMock
from collections import Counter

pytestmark = [pytest.mark.integration]


class TestExtractorStaticMethods:
    """Tests for static methods in Extractor class."""

    def test_process_binary_string_printable(self):
        """Test processing a printable binary string."""
        from redb.extractors.extractor import Extractor

        # Test with printable ASCII characters
        input_bytes = b"Hello World\x00\x00\x00"
        result = Extractor.process_binary_string(input_bytes)
        assert result == "Hello World"

    def test_process_binary_string_non_printable(self):
        """Test processing a string with non-printable characters."""
        from redb.extractors.extractor import Extractor

        # Test with non-printable characters
        input_bytes = b"\x01\x02Hello\x00"
        result = Extractor.process_binary_string(input_bytes)
        assert "\\x01" in result
        assert "\\x02" in result
        assert "Hello" in result

    def test_process_binary_string_empty(self):
        """Test processing an empty binary string."""
        from redb.extractors.extractor import Extractor

        input_bytes = b"\x00\x00\x00"
        result = Extractor.process_binary_string(input_bytes)
        assert result == ""

    def test_process_binary_string_all_printable(self):
        """Test processing a fully printable string."""
        from redb.extractors.extractor import Extractor

        input_bytes = b"TestString123"
        result = Extractor.process_binary_string(input_bytes)
        assert result == "TestString123"

    def test_remove_non_utf8_valid(self):
        """Test removing non-UTF8 characters from valid UTF8 string."""
        from redb.extractors.extractor import Extractor

        input_bytes = b"Hello World"
        result = Extractor.remove_non_utf8(input_bytes)
        assert result == b"Hello World"

    def test_remove_non_utf8_with_invalid(self):
        """Test removing non-UTF8 characters from mixed string."""
        from redb.extractors.extractor import Extractor

        # Mix of valid UTF8 and invalid bytes
        input_bytes = b"Hello\xff\xfeWorld"
        result = Extractor.remove_non_utf8(input_bytes)
        # Should remove the invalid bytes
        assert b"\xff" not in result
        assert b"\xfe" not in result
        assert b"Hello" in result
        assert b"World" in result

    def test_remove_non_utf8_empty(self):
        """Test removing non-UTF8 from empty string."""
        from redb.extractors.extractor import Extractor

        result = Extractor.remove_non_utf8(b"")
        assert result == b""


class TestExtractorEntropyCalculation:
    """Tests for entropy calculation in Extractor class."""

    def test_calculate_entropy_empty_data(self, elf_binary_path, mock_logger):
        """Test entropy calculation with empty data."""
        from redb.extractors.basicproperties import BasicPropertiesExtractor

        with patch('redb.settings.ELASTIC_BINARIES_COLLECTION', 'test'):
            extractor = BasicPropertiesExtractor(elf_binary_path, mock_logger)
            result = extractor.calculate_entropy(b"")
            assert result == 0.0

    def test_calculate_entropy_uniform_data(self, elf_binary_path, mock_logger):
        """Test entropy calculation with uniform (low entropy) data."""
        from redb.extractors.basicproperties import BasicPropertiesExtractor

        with patch('redb.settings.ELASTIC_BINARIES_COLLECTION', 'test'):
            extractor = BasicPropertiesExtractor(elf_binary_path, mock_logger)
            # All same bytes = 0 entropy
            uniform_data = b"\x00" * 256
            result = extractor.calculate_entropy(uniform_data)
            assert result == 0.0

    def test_calculate_entropy_random_data(self, elf_binary_path, mock_logger, high_entropy_data):
        """Test entropy calculation with random (high entropy) data."""
        from redb.extractors.basicproperties import BasicPropertiesExtractor

        with patch('redb.settings.ELASTIC_BINARIES_COLLECTION', 'test'):
            extractor = BasicPropertiesExtractor(elf_binary_path, mock_logger)
            result = extractor.calculate_entropy(high_entropy_data)
            # Random data should have entropy close to 8 (max for bytes)
            assert result > 7.0

    def test_calculate_entropy_binary_data(self, elf_binary_path, mock_logger):
        """Test entropy calculation with binary data."""
        from redb.extractors.basicproperties import BasicPropertiesExtractor

        with patch('redb.settings.ELASTIC_BINARIES_COLLECTION', 'test'):
            extractor = BasicPropertiesExtractor(elf_binary_path, mock_logger)
            # Two equally distributed values = 1 bit entropy
            binary_data = b"\x00\x01" * 128
            result = extractor.calculate_entropy(binary_data)
            assert abs(result - 1.0) < 0.01

    def test_calculate_entropy_string_data(self, elf_binary_path, mock_logger):
        """Test entropy calculation with string data."""
        from redb.extractors.basicproperties import BasicPropertiesExtractor

        with patch('redb.settings.ELASTIC_BINARIES_COLLECTION', 'test'):
            extractor = BasicPropertiesExtractor(elf_binary_path, mock_logger)
            # String with two equally distributed characters
            string_data = "ab" * 100
            result = extractor.calculate_entropy(string_data)
            assert abs(result - 1.0) < 0.01


class TestExtractorInitialization:
    """Tests for Extractor initialization."""

    def test_extractor_hashes_computed_on_init(self, elf_binary_path, mock_logger, known_hashes):
        """Test that hashes are computed during initialization."""
        from redb.extractors.basicproperties import BasicPropertiesExtractor

        with patch('redb.settings.ELASTIC_BINARIES_COLLECTION', 'test'):
            extractor = BasicPropertiesExtractor(elf_binary_path, mock_logger)

            assert extractor.md5 == known_hashes['md5']
            assert extractor.sha1 == known_hashes['sha1']
            assert extractor.sha256 == known_hashes['sha256']

    def test_extractor_hash_dataclass_created(self, elf_binary_path, mock_logger, known_hashes):
        """Test that Hash dataclass is created during initialization."""
        from redb.extractors.basicproperties import BasicPropertiesExtractor

        with patch('redb.settings.ELASTIC_BINARIES_COLLECTION', 'test'):
            extractor = BasicPropertiesExtractor(elf_binary_path, mock_logger)

            assert extractor.hash.md5 == known_hashes['md5']
            assert extractor.hash.sha1 == known_hashes['sha1']
            assert extractor.hash.sha256 == known_hashes['sha256']

    def test_extractor_binary_cached_property(self, elf_binary_path, mock_logger, elf_binary_content):
        """Test that binary content is loaded as cached property."""
        from redb.extractors.basicproperties import BasicPropertiesExtractor

        with patch('redb.settings.ELASTIC_BINARIES_COLLECTION', 'test'):
            extractor = BasicPropertiesExtractor(elf_binary_path, mock_logger)

            # Access binary property
            binary = extractor.binary
            assert binary == elf_binary_content

            # Second access should return cached value (same id)
            assert extractor.binary is binary

    def test_extractor_with_exporters(self, elf_binary_path, mock_logger, mock_print_exporter):
        """Test extractor initialization with exporters."""
        from redb.extractors.basicproperties import BasicPropertiesExtractor

        with patch('redb.settings.ELASTIC_BINARIES_COLLECTION', 'test'):
            extractor = BasicPropertiesExtractor(
                elf_binary_path,
                mock_logger,
                exporters=[mock_print_exporter]
            )

            assert len(extractor.exporters) == 1
            assert extractor.exporters[0] is mock_print_exporter

    def test_extractor_with_index_prefix(self, elf_binary_path, mock_logger):
        """Test extractor initialization with custom index prefix."""
        from redb.extractors.basicproperties import BasicPropertiesExtractor

        with patch('redb.settings.ELASTIC_BINARIES_COLLECTION', 'test'):
            extractor = BasicPropertiesExtractor(
                elf_binary_path,
                mock_logger,
                index_prefix="custom_prefix"
            )

            assert "custom_prefix" in extractor.elastic_index

    def test_extractor_known_benign_flag(self, elf_binary_path, mock_logger):
        """Test extractor with known_benign flag."""
        from redb.extractors.basicproperties import BasicPropertiesExtractor

        with patch('redb.settings.ELASTIC_BINARIES_COLLECTION', 'test'):
            extractor = BasicPropertiesExtractor(
                elf_binary_path,
                mock_logger,
                known_benign=True
            )

            assert extractor.known_benign is True
            assert extractor.known_malicious is False

    def test_extractor_known_malicious_flag(self, elf_binary_path, mock_logger):
        """Test extractor with known_malicious flag."""
        from redb.extractors.basicproperties import BasicPropertiesExtractor

        with patch('redb.settings.ELASTIC_BINARIES_COLLECTION', 'test'):
            extractor = BasicPropertiesExtractor(
                elf_binary_path,
                mock_logger,
                known_malicious=True
            )

            assert extractor.known_benign is False
            assert extractor.known_malicious is True


class TestExtractorExportData:
    """Tests for export_data method."""

    def test_export_data_with_print_exporter(self, elf_binary_path, mock_logger, mock_print_exporter, capsys):
        """Test export_data with PrintExporter."""
        from redb.extractors.basicproperties import BasicPropertiesExtractor

        with patch('redb.settings.ELASTIC_BINARIES_COLLECTION', 'test'):
            extractor = BasicPropertiesExtractor(
                elf_binary_path,
                mock_logger,
                exporters=[mock_print_exporter]
            )

            result = extractor.export_data()
            # Should succeed with PrintExporter
            assert result is True

    def test_export_data_no_exporters(self, elf_binary_path, mock_logger):
        """Test export_data with no exporters configured."""
        from redb.extractors.basicproperties import BasicPropertiesExtractor

        with patch('redb.settings.ELASTIC_BINARIES_COLLECTION', 'test'):
            extractor = BasicPropertiesExtractor(
                elf_binary_path,
                mock_logger,
                exporters=[]
            )

            result = extractor.export_data()
            # Should succeed with no exporters (nothing to export)
            assert result is True


class TestExtractorEdgeCases:
    """Tests for edge cases in Extractor class."""

    def test_extractor_with_nonexistent_file(self, mock_logger):
        """Test extractor with non-existent file."""
        from redb.extractors.basicproperties import BasicPropertiesExtractor

        with patch('redb.settings.ELASTIC_BINARIES_COLLECTION', 'test'):
            with pytest.raises(FileNotFoundError):
                BasicPropertiesExtractor("/nonexistent/file.bin", mock_logger)

    def test_entropy_none_data(self, elf_binary_path, mock_logger):
        """Test entropy calculation with None returns 0."""
        from redb.extractors.basicproperties import BasicPropertiesExtractor

        with patch('redb.settings.ELASTIC_BINARIES_COLLECTION', 'test'):
            extractor = BasicPropertiesExtractor(elf_binary_path, mock_logger)
            result = extractor.calculate_entropy(None)
            assert result == 0.0

    def test_process_binary_string_high_bytes(self):
        """Test processing binary string with high byte values."""
        from redb.extractors.extractor import Extractor

        # Characters above 126 are non-printable
        input_bytes = b"\x7f\x80\x81\xff"
        result = Extractor.process_binary_string(input_bytes)
        assert "\\x7f" in result
        assert "\\x80" in result
        assert "\\xff" in result