James F. Brinkley

79 papers A* 1B 3Misc 43Journal 26Unranked 6

Year	Rank	Type	Title / Venue / Authors
2017	Misc	`conf`	Cross-species Mapping of Human and Mouse Craniofacial Structures. AMIA José L. V. Mejino Jr., Landon T. Detwiler, Timothy C. Cox, James F. Brinkley
2016	J	`jnl`	From frames to OWL2: Converting the Foundational Model of Anatomy. Artif. Intell. Medicine Landon T. Detwiler, José L. V. Mejino Jr., James F. Brinkley
2016	—	`conf`	Multi-species Ontologies of the Craniofacial Musculoskeletal System. ICBO/BioCreative José Leonardo Villaraza Mejino Jr., James F. Brinkley, Timothy C. Cox, Landon Detwiler
2015	Misc	`conf`	Converting the Foundational Model of Anatomy to OWL2. AMIA Landon T. Detwiler, José L. V. Mejino Jr., James F. Brinkley
2014	J	`jnl`	Neuroanatomical domain of the foundational model of anatomy ontology. J. Biomed. Semant. B. Nolan Nichols, José L. V. Mejino Jr., Landon Detwiler, Trond T. Nilsen, Maryann E. Martone, Jessica A. Turner, Daniel L. Rubin, James F. Brinkley
2013	—	`conf`	Human Development Domain of the Ontology of Craniofacial Development and Malformation. ICBO José L. V. Mejino Jr., Ravensara S. Travillian, Timothy C. Cox, Linda G. Shapiro, James F. Brinkley
2012	B	`conf`	A Dataflow Graph Transformation Language and Query Rewriting System for RDF Ontologies. SSDBM Marianne Shaw, Landon Detwiler, James F. Brinkley, Dan Suciu
2012	J	`jnl`	A Query Integrator and Manager for the Query Web. J. Biomed. Informatics James F. Brinkley, Landon Detwiler
2012	J	`jnl`	Ontological labels for automated location of anatomical shape differences. J. Biomed. Informatics Shane Steinert-Threlkeld, Siamak Ardekani, José L. V. Mejino Jr., Landon Detwiler, James F. Brinkley, Michael Halle, Ron Kikinis, Raimond L. Winslow, Michael I. Miller, J. Tilak Ratnanather
2012	Misc	`conf`	Ontology-Based Federated Data Access to Human Studies Information. AMIA Ida Sim, Simona Carini, Samson W. Tu, Landon Detwiler, James F. Brinkley, Shamin Mollah, Karl Burke, Harold P. Lehmann, Swati Chakraborty, Knut M. Wittkowski, Brad Pollock, Thomas Johnson, Vojtech Huser
2011	J	`jnl`	A partnership approach for Electronic Data Capture in small-scale clinical trials. J. Biomed. Informatics Joshua D. Franklin, Alicia F. Guidry, James F. Brinkley
2011	—	`conf`	Ontological Labels for Automated Location of Left Ventricular Remodeling. ICSC Shane Steinert-Threlkeld, Siamak Ardekani, José L. V. Mejino Jr., Landon Detwiler, James F. Brinkley, Michael Halle, Ron Kikinis, Raimond L. Winslow, Michael I. Miller, J. Tilak Ratnanather
2011	—	`conf`	The Foundational Model of Neuroanatomy Ontology: An Ontology Framework to Support Neuroanatomical Data Integration. ICBO B. Nolan Nichols, José L. V. Mejino Jr., James F. Brinkley
2011	J	`jnl`	vSPARQL: A view definition language for the semantic web. J. Biomed. Informatics Marianne Shaw, Landon Fridman Detwiler, Natalya Fridman Noy, James F. Brinkley, Dan Suciu
2010	J	`jnl`	Application of neuroanatomical ontologies for neuroimaging data annotation. Frontiers Neuroinformatics Jessica A. Turner, José L. V. Mejino Jr., James F. Brinkley, Landon T. Detwiler, Hyo Jong Lee, Maryann E. Martone, Daniel L. Rubin
2009	B	`conf`	A similarity retrieval method for functional magnetic resonance imaging (fMRI) statistical maps. Image Processing Rosalia F. Tungaraza, J. Guan, S. M. Rolfe, Indriyati Atmosukarto, Andrew V. Poliakov, Natalia M. Kleinhans, Elizabeth H. Aylward, Jeffrey G. Ojemann, James F. Brinkley, Linda G. Shapiro
2009	B	`conf`	An independent component analysis based tool for exploring functional connections in the brain. Image Processing S. M. Rolfe, L. Finney, Rosalia F. Tungaraza, J. Guan, Linda G. Shapiro, James F. Brinkley, Andrew V. Poliakov, Natalia M. Kleinhans, E. Alyward
2009	J	`jnl`	Content-specific auditing of a large scale anatomy ontology. J. Biomed. Informatics Ira J. Kalet, José L. V. Mejino Jr., Vania Wang, Mark Whipple, James F. Brinkley
2009	J	`jnl`	Distributed XQuery-based integration and visualization of multimodality brain mapping data. Frontiers Neuroinformatics Landon T. Detwiler, Dan Suciu, Joshua D. Franklin, Eider B. Moore, Andrew V. Poliakov, Eunjung Lee, David P. Corina, George A. Ojemann, James F. Brinkley
2008	Misc	`conf`	FMA-RadLex: An Application Ontology of Radiological Anatomy derived from the Foundational Model of Anatomy Reference Ontology. AMIA José L. V. Mejino Jr., Daniel L. Rubin, James F. Brinkley
2008	Misc	`conf`	Generating Application Ontologies from Reference Ontologies. AMIA Marianne Shaw, Landon Detwiler, James F. Brinkley, Dan Suciu
2008	Misc	`conf`	Regular Paths in SparQL: Querying the NCI Thesaurus. AMIA Landon Detwiler, Dan Suciu, James F. Brinkley
2007	Misc	`conf`	A Model Browser for Biosimulation. AMIA Gary Yngve, James F. Brinkley, Daniel L. Cook, Linda G. Shapiro
2007	J	`jnl`	MindSeer: a portable and extensible tool for visualization of structural and functional neuroimaging data. BMC Bioinform. Eider B. Moore, Andrew V. Poliakov, Peter Lincoln, James F. Brinkley
2007	J	`jnl`	Research Paper: Issues in Biomedical Research Data Management and Analysis: Needs and Barriers. J. Am. Medical Informatics Assoc. Nicholas R. Anderson, E. Sally Lee, J. Scott Brockenbrough, Mark E. Minie, Sherrilynne S. Fuller, James F. Brinkley, Peter Tarczy-Hornoch
2007	J	`jnl`	Unobtrusive integration of data management with fMRI analysis. Neuroinformatics Andrew V. Poliakov, Xenia Hertzenberg, Eider B. Moore, David P. Corina, George A. Ojemann, James F. Brinkley
2007	Misc	`conf`	XGI: A Graphical Interface for XQuery Creation. AMIA Xiang Li, John H. Gennari, James F. Brinkley
2006	Misc	`conf`	A framework for using reference ontologies as a foundation for the semantic web. AMIA James F. Brinkley, Dan Suciu, Landon Detwiler, John H. Gennari, Cornelius Rosse
2006	Misc	`conf`	Custom Views of Reference Ontologies. AMIA Landon Detwiler, James F. Brinkley
2006	Misc	`conf`	Customizable Electronic Laboratory Online (CELO): A Web-based Data Management System Builder for Biomedical Research Laboratories. AMIA Christine Fong, James F. Brinkley
2006	Misc	`conf`	Intelligent Web-based Whole Body Visualization for Anatomy Education. AMIA Wayne Warren, Augusto V. Agoncillo, Joshua D. Franklin, James F. Brinkley
2006	Misc	`conf`	Model Driven Laboratory Information Management Systems. AMIA Hao Li, John H. Gennari, James F. Brinkley
2005	—	`conf`	A Framework for XML-Based Integration of Data, Visualization and Analysis in a Biomedical Domain. XSym Nathan Bales, James F. Brinkley, E. Sally Lee, Shobhit Mathur, Christopher Ré, Dan Suciu
2005	Misc	`conf`	A Pilot Bridging Data Integration and Analytics: BioMediator and R? AMIA Sophia Jeng, Kelan Wang, Janos Barbero, James F. Brinkley, Peter Tarczy-Hornoch
2005	J	`jnl`	Application of Information Technology: Processes and Problems in the Formative Evaluation of an Interface to the Foundational Model of Anatomy Knowledge Base. J. Am. Medical Informatics Assoc. Linda G. Shapiro, Emily Chung, Landon Detwiler, José L. V. Mejino Jr., Augusto V. Agoncillo, James F. Brinkley, Cornelius Rosse
2005	J	`jnl`	Application of Information Technology: Server-based Approach to Web Visualization of Integrated Three-dimensional Brain Imaging Data. J. Am. Medical Informatics Assoc. Andrew V. Poliakov, Evan Albright, Kevin P. Hinshaw, David P. Corina, George A. Ojemann, Richard F. Martin, James F. Brinkley
2005	Misc	`conf`	Automatic XQuery Generation and Generalized Visualization for an XML Interface to a Relational Database. AMIA E. Sally Lee, Dan Suciu, James F. Brinkley
2005	Misc	`conf`	BioMediator Data Integration: Beyond Genomics to Neuroscience Data. AMIA Kelan Wang, Peter Tarczy-Hornoch, Ron Shaker, Peter Mork, James F. Brinkley
2005	Misc	`conf`	Knowledge-Based, Interactive, Custom Anatomical Scene Creation for Medical Education: The Biolucida System. AMIA Wayne Warren, James F. Brinkley
2004	—	`conf`	A Relation-Centric Query Engine for the Foundational Model of Anatomy. MedInfo Landon T. Detwiler, Emily Chung, Ann Li, José L. V. Mejino Jr., Augusto V. Agoncillo, James F. Brinkley, Cornelius Rosse, Linda G. Shapiro
2003	Misc	`conf`	A Prototype Natural Language Interface to a Large Complex Knowledge Base, the Foundational Model of Anatomy. AMIA Gregory Distelhorst, Vishrut Srivastava, Cornelius Rosse, James F. Brinkley
2003	Misc	`conf`	Dynamic XML-Based Exchange of Relational Data: Application to the Human Brain Project. AMIA Zhengming Tang, Yana Kadiyska, Hao Li, Dan Suciu, James F. Brinkley
2003	Misc	`conf`	Efficient Web-Based Navigation of the Foundational Model of Anatomy. AMIA Landon T. Detwiler, José L. V. Mejino Jr., Cornelius Rosse, James F. Brinkley
2003	J	`jnl`	OQAFMA Querying Agent for the Foundational Model of Anatomy: a prototype for providing flexible and efficient access to large semantic networks. J. Biomed. Informatics Peter Mork, James F. Brinkley, Cornelius Rosse
2003	Misc	`conf`	The Evolving Neuroanatomical Component of the Foundational Model of Anatomy. AMIA Richard F. Martin, Kurt L. Rickard, José L. V. Mejino Jr., Augusto V. Agoncillo, James F. Brinkley, Cornelius Rosse
2003	J	`jnl`	Towards effective and rewarding data sharing. Neuroinformatics Daniel Gardner, Arthur W. Toga, Giorgio A. Ascoli, Jackson T. Beatty, James F. Brinkley, Anders M. Dale, Peter T. Fox, Esther P. Gardner, John S. George, Nigel H. Goddard, Kristen M. Harris, Edward Herskovits, Michael L. Hines, Gwen A. Jacobs, Russell E. Jacobs, Edward G. Jones, David N. Kennedy, Daniel Y. Kimberg, John C. Mazziotta, Perry L. Miller, Susumu Mori, David C. Mountain, Allan L. Reiss, Glenn D. Rosen, David A. Rottenberg, Gordon M. Shepherd, Neil R. Smalheiser, Kenneth P. Smith, Tom Strachan, David C. Van Essen, Robert W. Williams, Stephen T. C. Wong
2002	Misc	`conf`	A Declarative Query Interface for Large Semantic Networks. AMIA Peter Mork, Dan Suciu, James F. Brinkley, Cornelius Rosse
2002	Misc	`conf`	An Online Image Management System for Anatomy Teaching. AMIA James F. Brinkley, Rex M. Jakobovits, Cornelius Rosse
2002	J	`jnl`	Application of Information Technology: WIRM: An Open Source Toolkit for Building Biomedical Web Applications. J. Am. Medical Informatics Assoc. Rex M. Jakobovits, Cornelius Rosse, James F. Brinkley
2002	J	`jnl`	Shape-Based Cortical Surface Segmentation for Visualization Brain Mapping. NeuroImage Kevin P. Hinshaw, Andrew V. Poliakov, Eider B. Moore, Richard F. Martin, Linda G. Shapiro, James F. Brinkley
2001	Misc	`conf`	Enabling clinicians, researchers, and educators to build custom web-based biomedical information systems. AMIA Rex M. Jakobovits, James F. Brinkley, Cornelius Rosse, Ed Weinberger
2001	Misc	`conf`	Foundational model of neuroanatomy: implications for the Human Brain Project. AMIA Richard F. Martin, José L. V. Mejino Jr., Douglas M. Bowden, James F. Brinkley, Cornelius Rosse
2001	Misc	`conf`	Representation of Structural Relationships in the Foundational Model of Anatomy. AMIA José L. V. Mejino Jr., Natalya Fridman Noy, Mark A. Musen, James F. Brinkley, Cornelius Rosse
2001	Misc	`conf`	Server-based approach to web visualization of integrated 3-D medical image data. AMIA Andrew V. Poliakov, Evan Albright, David P. Corina, George A. Ojemann, Richard F. Martin, James F. Brinkley
2000	Misc	`conf`	A Personal Annotated Image Server. AMIA William B. Lober, James F. Brinkley
2000	Misc	`conf`	Requirements of a Web-based experiment management system. AMIA Rex M. Jakobovits, Stephen Soderland, Ricky K. Taira, James F. Brinkley
1999	Misc	`conf`	A Portable Image Annotation Tool for Web-based Anatomy Atlases. AMIA William B. Lober, James F. Brinkley
1999	Misc	`conf`	Anatomical information in radiation treatment planning. AMIA Ira J. Kalet, Jonn Wu, Matthew Lease, Mary M. Austin-Seymour, James F. Brinkley, Cornelius Rosse
1999	Misc	`conf`	Design features of on-line anatomy information resources: a comparison with the Digital Anatomist. AMIA Sara Kim, James F. Brinkley, Cornelius Rosse
1999	J	`jnl`	Design of an Anatomy Information System. IEEE Computer Graphics and Applications James F. Brinkley, Benjamin A. Wong, Kevin P. Hinshaw, Cornelius Rosse
1999	Misc	`conf`	Integration and visualization of multimodality brain data for language mapping. AMIA Andrew V. Poliakov, Kevin P. Hinshaw, Cornelius Rosse, James F. Brinkley
1999	Misc	`conf`	Representing the Digital Anatomist Foundational Model as a Protege Ontology. AMIA Jin S. Hahn, Elizabeth S. Burnside, James F. Brinkley, Cornelius Rosse, Mark A. Musen
1999	Misc	`conf`	Semi-automatic scene generation using the Digital Anatomist Foundational Model. AMIA Benjamin A. Wong, Cornelius Rosse, James F. Brinkley
1998	Misc	`conf`	Dynamic 3-D Scene Navigation in Web-Based Anatomy Atlases. AMIA Benjamin A. Wong, James F. Brinkley
1998	Misc	`conf`	Incorporating constraint-based shape models into an interactive system for functional brain mapping. AMIA Kevin P. Hinshaw, James F. Brinkley
1998	Misc	`conf`	Query-by-Context: A Framework for Modeling and Navigating Multimedia Research. AMIA Rex M. Jakobovits, James F. Brinkley
1998	Misc	`conf`	Requirements for an on-line knowledge-based anatomy information system. AMIA James F. Brinkley, Cornelius Rosse
1998	J	`jnl`	Research Paper: Motivation and Organizational Principles for Anatomical Knowledge Representation: The Digital Anatomist Symbolic Knowledge Base. J. Am. Medical Informatics Assoc. Cornelius Rosse, José L. V. Mejino Jr., Bharath R. Modayur, Rex M. Jakobovits, Kevin P. Hinshaw, James F. Brinkley
1998	Misc	`conf`	The digital anatomist foundational model: principles for defining and structuring its concept domain. AMIA Cornelius Rosse, Linda G. Shapiro, James F. Brinkley
1997	Misc	`conf`	Evaluation of a visualization-based approach to functional brain mapping. AMIA Bharath R. Modayur, Rex M. Jakobovits, Kenneth Maravilla, George A. Ojemann, James F. Brinkley
1997	Misc	`conf`	Managing medical research data with a Web-Interfacing Repository Manager. AMIA Rex M. Jakobovits, James F. Brinkley
1997	J	`jnl`	Slisp: A Flexible Software Toolkit for Hybrid, Embedded and Distributed Applications. Softw. Pract. Exp. James F. Brinkley, Jeffrey S. Prothero
1997	J	`jnl`	Synthesis of Research: The Digital Anatomist Distributed Framework and Its Applications to Knowledge-based Medical Imaging. J. Am. Medical Informatics Assoc. James F. Brinkley, Cornelius Rosse
1997	Misc	`conf`	Using 3-D shape models to guide segmentation of MR brain images. AMIA Kevin P. Hinshaw, James F. Brinkley
1996	J	`jnl`	A Visual Database Environment for Scientific Research. J. Vis. Lang. Comput. Rex M. Jakobovits, Lara M. Lewis, James P. Ahrens, Linda G. Shapiro, Steven L. Tanimoto, James F. Brinkley
1996	J	`jnl`	A metric for quantifying response time in a browser application. IEEE Trans. Syst. Man Cybern. Part A D. J. Dailey, James F. Brinkley
1988	J	`jnl`	Heuristic refinement method for the derivation of protein solution structures: validation on cytochrome b562. J. Chem. Inf. Comput. Sci. James F. Brinkley, Russ B. Altman, Bruce S. Duncan, Bruce G. Buchanan, Oleg Jardetzky
1986	A*	`conf`	PROTEAN: Deriving Protein Structure from Constraints. AAAI Barbara Hayes-Roth, Bruce G. Buchanan, Olivier Lichtarge, Mike Hewitt, Russ B. Altman, James F. Brinkley, Craig Cornelius, Bruce S. Duncan, Oleg Jardetzky
1985	J	`jnl`	Knowledge-Driven Ultrasonic Three-Dimensional Organ Modeling. IEEE Trans. Pattern Anal. Mach. Intell. James F. Brinkley