James C. Whisstock

19 papers A 1Misc 1Journal 14Unranked 3
YearRankTypeTitle / Venue / Authors
2022 J jnl
Juno: a Python-based graphical package for optical system design.
CoRR
David Dierickx, Patrick Cleeve, Sergey Gorelick, James C. Whisstock, Alex De Marco
2022 J jnl
Mining folded proteomes in the era of accurate structure prediction.
PLoS Comput. Biol.
Charles Bayly-Jones, James C. Whisstock
2020 — conf
PhosTransfer: A Deep Transfer Learning Framework for Kinase-Specific Phosphorylation Site Prediction in Hierarchy.
PAKDD (2)
Ying Xu, Campbell Wilson, André Leier, Tatiana T. Marquez-Lago, James C. Whisstock, Jiangning Song
2020 Misc conf
Prediction of secondary structure population and intrinsic disorder of proteins using multitask deep learning.
AMIA
Ying Xu, André Leier, Tatiana T. Marquez-Lago, Jue Xie, Antonio Jimeno-Yepes, James C. Whisstock, Campbell Wilson, Jiangning Song
2019 J jnl
Twenty years of bioinformatics research for protease-specific substrate and cleavage site prediction: a comprehensive revisit and benchmarking of existing methods.
Briefings Bioinform.
Fuyi Li, Yanan Wang, Chen Li, Tatiana T. Marquez-Lago, André Leier, Neil D. Rawlings, Gholamreza Haffari, Jerico Nico De Leon Revote, Tatsuya Akutsu, Kuo-Chen Chou, Anthony W. Purcell, Robert N. Pike, Geoffrey I. Webb, Alexander Ian Smith, Trevor Lithgow, Roger J. Daly, James C. Whisstock, Jiangning Song
2015 J jnl
GlycoMine: a machine learning-based approach for predicting N-, C- and O-linked glycosylation in the human proteome.
Bioinform.
Fuyi Li, Chen Li, Mingjun Wang, Geoffrey I. Webb, Yang Zhang, James C. Whisstock, Jiangning Song
2014 J jnl
A New Model for Pore Formation by Cholesterol-Dependent Cytolysins.
PLoS Comput. Biol.
Cyril F. Reboul, James C. Whisstock, Michelle A. Dunstone
2014 J jnl
Cascleave 2.0, a new approach for predicting caspase and granzyme cleavage targets.
Bioinform.
Mingjun Wang, Xing-Ming Zhao, Hao Tan, Tatsuya Akutsu, James C. Whisstock, Jiangning Song
2012 J jnl
Predicting giant transmembrane β-barrel architecture.
Bioinform.
Cyril F. Reboul, Khalid Mahmood, James C. Whisstock, Michelle A. Dunstone
2011 J jnl
Automatic generation of protein structure cartoons with Pro-origami.
Bioinform.
Alex D. Stivala, Michael Wybrow, Anthony Wirth, James C. Whisstock, Peter J. Stuckey
2011 J jnl
Bioinformatic Approaches for Predicting substrates of Proteases.
J. Bioinform. Comput. Biol.
Jiangning Song, Hao Tan, Sarah E. Boyd, Hong-Bin Shen, Khalid Mahmood, Geoffrey I. Webb, Tatsuya Akutsu, James C. Whisstock, Robert N. Pike
2010 J jnl
Cascleave: towards more accurate prediction of caspase substrate cleavage sites.
Bioinform.
Jiangning Song, Hao Tan, Hong-Bin Shen, Khalid Mahmood, Sarah E. Boyd, Geoffrey I. Webb, Tatsuya Akutsu, James C. Whisstock
2010 J jnl
EGM: encapsulated gene-by-gene matching to identify gene orthologs and homologous segments in genomes.
Bioinform.
Khalid Mahmood, Arun Siddharth Konagurthu, Jiangning Song, Ashley M. Buckle, Geoffrey I. Webb, James C. Whisstock
2009 A conf
High-throughput protein structure determination using grid computing.
IPDPS
Jason W. Schmidberger, Blair Bethwaite, Colin Enticott, Mark A. Bate, Steve G. Androulakis, Noel G. Faux, Cyril F. Reboul, Jennifer M. N. Phan, James C. Whisstock, Wojtek Goscinski, Slavisa Garic, David Abramson, Ashley M. Buckle
2007 — conf
eResearch Solutions for High Throughput Structural Biology.
eScience
Noel G. Faux, Anthony Beitz, Mark A. Bate, Abdullah A. Amin, Ian Atkinson, Colin Enticott, Khalid Mahmood, Matthew Swift, Andrew E. Treloar, David Abramson, James C. Whisstock, Ashley M. Buckle
2006 J jnl
The REFOLD database: a tool for the optimization of protein expression and refolding.
Nucleic Acids Res.
Michelle K. M. Chow, Abdullah A. Amin, Kate F. Fulton, Thushan Fernando, Lawrence Kamau, Chris Batty, Michael Louca, Storm Ho, James C. Whisstock, Stephen P. Bottomley, Ashley M. Buckle
2005 J jnl
Pops: a Computational Tool for Modeling and Predicting Protease Specificity.
J. Bioinform. Comput. Biol.
Sarah E. Boyd, Robert N. Pike, George B. Rudy, James C. Whisstock, Maria J. García de la Banda
2004 — conf
PoPS: A Computational Tool for Modeling and Predicting Protease Specificity.
CSB
Sarah E. Boyd, Maria J. García de la Banda, Robert N. Pike, James C. Whisstock, George B. Rudy
2004 J jnl
Progressive Multiple Alignment Using Sequence Triplet Optimizations and Three-residue Exchange Costs.
J. Bioinform. Comput. Biol.
Arun Siddharth Konagurthu, James C. Whisstock, Peter J. Stuckey