James C. Gee

291 papers A* 13A 8B 19C 1Misc 1Journal 105Unranked 123
YearRankTypeTitle / Venue / Authors
2026 J jnl
Factored Levenberg-Marquardt for Diffeomorphic Image Registration: An efficient optimizer for FireANTs.
CoRR
Rohit Jena, Pratik Chaudhari, James C. Gee
2026 — ed.
Medical Image Computing and Computer Assisted Intervention - MICCAI 2025 - 28th International Conference, Daejeon, South Korea, September 23-27, 2025, Proceedings, Part I
MICCAI (1)
James C. Gee, Daniel C. Alexander, Jaesung Hong, Juan Eugenio Iglesias, Carole H. Sudre, Archana Venkataraman, Polina Golland, Jong Hyo Kim, Jinah Park
2026 — ed.
Medical Image Computing and Computer Assisted Intervention - MICCAI 2025 - 28th International Conference, Daejeon, South Korea, September 23-27, 2025, Proceedings, Part II
MICCAI (2)
James C. Gee, Daniel C. Alexander, Jaesung Hong, Juan Eugenio Iglesias, Carole H. Sudre, Archana Venkataraman, Polina Golland, Jong Hyo Kim, Jinah Park
2026 — ed.
Medical Image Computing and Computer Assisted Intervention - MICCAI 2025 - 28th International Conference, Daejeon, South Korea, September 23-27, 2025, Proceedings, Part III
MICCAI (3)
James C. Gee, Daniel C. Alexander, Jaesung Hong, Juan Eugenio Iglesias, Carole H. Sudre, Archana Venkataraman, Polina Golland, Jong Hyo Kim, Jinah Park
2026 — ed.
Medical Image Computing and Computer Assisted Intervention - MICCAI 2025 - 28th International Conference, Daejeon, South Korea, September 23-27, 2025, Proceedings, Part IV
MICCAI (4)
James C. Gee, Daniel C. Alexander, Jaesung Hong, Juan Eugenio Iglesias, Carole H. Sudre, Archana Venkataraman, Polina Golland, Jong Hyo Kim, Jinah Park
2026 — ed.
Medical Image Computing and Computer Assisted Intervention - MICCAI 2025 - 28th International Conference, Daejeon, South Korea, September 23-27, 2025, Proceedings, Part IX
MICCAI (9)
James C. Gee, Daniel C. Alexander, Jaesung Hong, Juan Eugenio Iglesias, Carole H. Sudre, Archana Venkataraman, Polina Golland, Jong Hyo Kim, Jinah Park
2026 — ed.
Medical Image Computing and Computer Assisted Intervention - MICCAI 2025 - 28th International Conference, Daejeon, South Korea, September 23-27, 2025, Proceedings, Part V
MICCAI (5)
James C. Gee, Daniel C. Alexander, Jaesung Hong, Juan Eugenio Iglesias, Carole H. Sudre, Archana Venkataraman, Polina Golland, Jong Hyo Kim, Jinah Park
2026 — ed.
Medical Image Computing and Computer Assisted Intervention - MICCAI 2025 - 28th International Conference, Daejeon, South Korea, September 23-27, 2025, Proceedings, Part VI
MICCAI (6)
James C. Gee, Daniel C. Alexander, Jaesung Hong, Juan Eugenio Iglesias, Carole H. Sudre, Archana Venkataraman, Polina Golland, Jong Hyo Kim, Jinah Park
2026 — ed.
Medical Image Computing and Computer Assisted Intervention - MICCAI 2025 - 28th International Conference, Daejeon, South Korea, September 23-27, 2025, Proceedings, Part VII
MICCAI (7)
James C. Gee, Daniel C. Alexander, Jaesung Hong, Juan Eugenio Iglesias, Carole H. Sudre, Archana Venkataraman, Polina Golland, Jong Hyo Kim, Jinah Park
2026 — ed.
Medical Image Computing and Computer Assisted Intervention - MICCAI 2025 - 28th International Conference, Daejeon, South Korea, September 23-27, 2025, Proceedings, Part VIII
MICCAI (8)
James C. Gee, Daniel C. Alexander, Jaesung Hong, Juan Eugenio Iglesias, Carole H. Sudre, Archana Venkataraman, Polina Golland, Jong Hyo Kim, Jinah Park
2026 — ed.
Medical Image Computing and Computer Assisted Intervention - MICCAI 2025 - 28th International Conference, Daejeon, South Korea, September 23-27, 2025, Proceedings, Part X
MICCAI (10)
James C. Gee, Daniel C. Alexander, Jaesung Hong, Juan Eugenio Iglesias, Carole H. Sudre, Archana Venkataraman, Polina Golland, Jong Hyo Kim, Jinah Park
2026 — ed.
Medical Image Computing and Computer Assisted Intervention - MICCAI 2025 - 28th International Conference, Daejeon, South Korea, September 23-27, 2025, Proceedings, Part XI
MICCAI (11)
James C. Gee, Daniel C. Alexander, Jaesung Hong, Juan Eugenio Iglesias, Carole H. Sudre, Archana Venkataraman, Polina Golland, Jong Hyo Kim, Jinah Park
2026 — ed.
Medical Image Computing and Computer Assisted Intervention - MICCAI 2025 - 28th International Conference, Daejeon, South Korea, September 23-27, 2025, Proceedings, Part XII
MICCAI (12)
James C. Gee, Daniel C. Alexander, Jaesung Hong, Juan Eugenio Iglesias, Carole H. Sudre, Archana Venkataraman, Polina Golland, Jong Hyo Kim, Jinah Park
2026 — ed.
Medical Image Computing and Computer Assisted Intervention - MICCAI 2025 - 28th International Conference, Daejeon, South Korea, September 23-27, 2025, Proceedings, Part XIII
MICCAI (13)
James C. Gee, Daniel C. Alexander, Jaesung Hong, Juan Eugenio Iglesias, Carole H. Sudre, Archana Venkataraman, Polina Golland, Jong Hyo Kim, Jinah Park
2026 — ed.
Medical Image Computing and Computer Assisted Intervention - MICCAI 2025 - 28th International Conference, Daejeon, South Korea, September 23-27, 2025, Proceedings, Part XIV
MICCAI (14)
James C. Gee, Daniel C. Alexander, Jaesung Hong, Juan Eugenio Iglesias, Carole H. Sudre, Archana Venkataraman, Polina Golland, Jong Hyo Kim, Jinah Park
2026 — ed.
Medical Image Computing and Computer Assisted Intervention - MICCAI 2025 - 28th International Conference, Daejeon, South Korea, September 23-27, 2025, Proceedings, Part XV
MICCAI (15)
James C. Gee, Daniel C. Alexander, Jaesung Hong, Juan Eugenio Iglesias, Carole H. Sudre, Archana Venkataraman, Polina Golland, Jong Hyo Kim, Jinah Park
2026 — ed.
Medical Image Computing and Computer Assisted Intervention - MICCAI 2025 - 28th International Conference, Daejeon, South Korea, September 23-27, 2025, Proceedings, Part XVI
MICCAI (16)
James C. Gee, Daniel C. Alexander, Jaesung Hong, Juan Eugenio Iglesias, Carole H. Sudre, Archana Venkataraman, Polina Golland, Jong Hyo Kim, Jinah Park
2025 J jnl
A Cloud-Based System for Automated AI Image Analysis and Reporting.
J. Imaging Inform. Medicine
Neil Chatterjee, Jeffrey T. Duda, James C. Gee, Ameena Elahi, Kristen Martin, Van Doan, Hannah Liu, Matthew T. MacLean, Daniel J. Rader, Arijitt Borthakur, Charles E. Kahn Jr., Hersh Sagreiya, Walter R. Witschey
2025 J jnl
A Scalable Distributed Framework for Multimodal GigaVoxel Image Registration.
CoRR
Rohit Jena, Vedant Zope, Pratik Chaudhari, James C. Gee
2025 — conf
Adapting Vision-Language Models for 3D CT/MRI Understanding on PMBB via Slice Selection and Explanation Analysis.
ICCVW
Hongzhuo Chen, Rahul Shukla, Ruiming Wu, Shu Yang, Duy Duong-Tran, Duy Minh Ho Nguyen, Mathias Niepert, Cameron Beeche, James C. Gee, Jeffrey T. Duda, Rakesh Sharma, Christos Davatzikos, Walter R. Witschey, Bojian Hou, Li Shen
2025 J jnl
Automated Integration of AI Results into Radiology Reports Using Common Data Elements.
J. Imaging Inform. Medicine
Garv Mehdiratta, Jeffrey T. Duda, Ameena Elahi, Arijitt Borthakur, Neil Chatterjee, James C. Gee, Hersh Sagreiya, Walter R. Witschey, Charles E. Kahn
2025 J jnl
Deep implicit optimization enables robust learnable features for deformable image registration.
Medical Image Anal.
Rohit Jena, Pratik Chaudhari, James C. Gee
2025 A* conf
Diversity By Design: Leveraging Distribution Matching for Offline Model-Based Optimization.
ICML
Michael S. Yao, James C. Gee, Osbert Bastani
2025 J jnl
Diversity By Design: Leveraging Distribution Matching for Offline Model-Based Optimization.
CoRR
Michael S. Yao, James C. Gee, Osbert Bastani
2025 J jnl
The LUMirage: An independent evaluation of zero-shot performance in the LUMIR challenge.
CoRR
Rohit Jena, Pratik Chaudhari, James C. Gee
2025 J jnl
Toward a robust lesion detection model in breast DCE-MRI: adapting foundation models to high-risk women.
CoRR
Gabriel A. B. do Nascimento, Vincent Dong, Guilherme J. Cavalcante, Alex Nguyen, Thaís Gaudencio do Rêgo, Yuri Malheiros, Telmo de Menezes e Silva Filho, Carla R. Zeballos Torrez, James C. Gee, Annemarie McCarthy, Andrew D. A. Maidment, Bruno Barufaldi
2025 J jnl
Toward explainable AI approaches for breast imaging: adapting foundation models to diverse populations.
CoRR
Guilherme J. Cavalcante, José Gabriel A. Moreira, Gabriel A. B. do Nascimento, Vincent Dong, Alex Nguyen, Thaís Gaudencio do Rêgo, Yuri Malheiros, Telmo de Menezes e Silva Filho, Carla R. Zeballos Torrez, James C. Gee, Annemarie McCarthy, Andrew D. A. Maidment, Bruno Barufaldi
2024 J jnl
A Concept-based Interpretable Model for the Diagnosis of Choroid Neoplasias using Multimodal Data.
CoRR
Yifan Wu, Yang Liu, Yue Yang, Michael S. Yao, Wenli Yang, Xuehui Shi, Lihong Yang, Dongjun Li, Yueming Liu, James C. Gee, Xuan Yang, Wenbin Wei, Shi Gu
2024 A* conf
A Textbook Remedy for Domain Shifts: Knowledge Priors for Medical Image Analysis.
NeurIPS
Yue Yang, Mona Gandhi, Yufei Wang, Yifan Wu, Michael S. Yao, Chris Callison-Burch, James C. Gee, Mark Yatskar
2024 J jnl
A Textbook Remedy for Domain Shifts: Knowledge Priors for Medical Image Analysis.
CoRR
Yue Yang, Mona Gandhi, Yufei Wang, Yifan Wu, Michael S. Yao, Chris Callison-Burch, James C. Gee, Mark Yatskar
2024 J jnl
Deep Implicit Optimization for Robust and Flexible Image Registration.
CoRR
Rohit Jena, Pratik Chaudhari, James C. Gee
2024 A* conf
Deep Learning in Medical Image Registration: Magic or Mirage?
NeurIPS
Rohit Jena, Deeksha Sethi, Pratik Chaudhari, James C. Gee
2024 J jnl
Deep Learning in Medical Image Registration: Magic or Mirage?
CoRR
Rohit Jena, Deeksha Sethi, Pratik Chaudhari, James C. Gee
2024 J jnl
Evidence Is All You Need: Ordering Imaging Studies via Language Model Alignment with the ACR Appropriateness Criteria.
CoRR
Michael S. Yao, Allison Chae, Charles E. Kahn Jr., Walter R. Witschey, James C. Gee, Hersh Sagreiya, Osbert Bastani
2024 J jnl
FireANTs: Adaptive Riemannian Optimization for Multi-Scale Diffeomorphic Registration.
CoRR
Rohit Jena, Pratik Chaudhari, James C. Gee
2024 J jnl
Generative Adversarial Bayesian Optimization for Surrogate Objectives.
CoRR
Michael S. Yao, Yimeng Zeng, Hamsa Bastani, Jacob R. Gardner, James C. Gee, Osbert Bastani
2024 A* conf
Generative Adversarial Model-Based Optimization via Source Critic Regularization.
NeurIPS
Michael S. Yao, Yimeng Zeng, Hamsa Bastani, Jacob R. Gardner, James C. Gee, Osbert Bastani
2024 J jnl
Neural Ordinary Differential Equation based Sequential Image Registration for Dynamic Characterization.
CoRR
Yifan Wu, Mengjin Dong, Rohit Jena, Chen Qin, James C. Gee
2024 J jnl
TransMatch: A Transformer-Based Multilevel Dual-Stream Feature Matching Network for Unsupervised Deformable Image Registration.
IEEE Trans. Medical Imaging
Zeyuan Chen, Yuanjie Zheng, James C. Gee
2023 A* conf
Beyond mAP: Towards Better Evaluation of Instance Segmentation.
CVPR
Rohit Jena, Lukas Zhornyak, Nehal Doiphode, Pratik Chaudhari, Vivek Buch, James C. Gee, Jianbo Shi
2023 J jnl
Brain Decodes Deep Nets.
CoRR
Huzheng Yang, James C. Gee, Jianbo Shi
2023 — conf
Integrating color deconvolution thresholding and weakly supervised learning for automated segmentation of neurofibrillary tangle and neuropil threads.
Digital and Computational Pathology
Hyung S. Roh, David J. Irwin, Mónica Muñoz López, Maria Mercedes Iñiguez de Onzoño Martin, Ranjit Ittyerah, Sydney Lim, Madigan L. Bedard, John L. Robinson, Theresa Schuck, Emilio Artacho-Pérula, María del Mar Arroyo Jiménez, Maria del Pilar Marcos Rabal, Francisco Javier Molina Romero, Sandra Cebada Sánchez, José Carlos Delgado González, Carlos de la Rosa-Prieto, Marta Córcoles Parada, Edward B. Lee, Daniel T. Ohm, Laura E. M. Wisse, David A. Wolk, James C. Gee, Ricardo Insausti, Paul A. Yushkevich, Min Chen
2023 J jnl
Memory Encoding Model.
CoRR
Huzheng Yang, James C. Gee, Jianbo Shi
2023 J jnl
Mesh Strikes Back: Fast and Efficient Human Reconstruction from RGB videos.
CoRR
Rohit Jena, Pratik Chaudhari, James C. Gee, Ganesh Subramanian Iyer, Siddharth Choudhary, Brandon M. Smith
2023 J jnl
Retinotopy Inspired Brain Encoding Model and the All-for-One Training Recipe.
CoRR
Huzheng Yang, Jianbo Shi, James C. Gee
2023 J jnl
SplatArmor: Articulated Gaussian splatting for animatable humans from monocular RGB videos.
CoRR
Rohit Jena, Ganesh Subramanian Iyer, Siddharth Choudhary, Brandon M. Smith, Pratik Chaudhari, James C. Gee
2023 — conf
SynthA1c: Towards Clinically Interpretable Patient Representations for Diabetes Risk Stratification.
PRIME@MICCAI
Michael S. Yao, Allison Chae, Matthew T. MacLean, Anurag Verma, Jeffrey T. Duda, James C. Gee, Drew A. Torigian, Daniel J. Rader, Charles E. Kahn, Walter R. Witschey, Hersh Sagreiya
2023 J jnl
The Role of Chain-of-Thought in Complex Vision-Language Reasoning Task.
CoRR
Yifan Wu, Pengchuan Zhang, Wenhan Xiong, Barlas Oguz, James C. Gee, Yixin Nie
2023 J jnl
Towards Establishing Dense Correspondence on Multiview Coronary Angiography: From Point-to-Point to Curve-to-Curve Query Matching.
CoRR
Yifan Wu, Rohit Jena, Mehmet A. Gülsün, Vivek K. Singh, Puneet Sharma, James C. Gee
2022 J jnl
Beyond mAP: Re-evaluating and Improving Performance in Instance Segmentation with Semantic Sorting and Contrastive Flow.
CoRR
Rohit Jena, Lukas Zhornyak, Nehal Doiphode, Vivek Buch, James C. Gee, Jianbo Shi
2022 J jnl
Learning-Based Radiomic Prediction of Type 2 Diabetes Mellitus Using Image-Derived Phenotypes.
CoRR
Michael S. Yao, Allison Chae, Matthew T. MacLean, Anurag Verma, Jeffrey T. Duda, James C. Gee, Drew A. Torigian, Daniel J. Rader, Charles E. Kahn, Walter R. Witschey, Hersh Sagreiya
2022 A* conf
NODEO: A Neural Ordinary Differential Equation Based Optimization Framework for Deformable Image Registration.
CVPR
Yifan Wu, Tom Z. Jiahao, Jiancong Wang, Paul A. Yushkevich, M. Ani Hsieh, James C. Gee
2021 J jnl
Brain MRI Deep Learning and Bayesian Inference System Augments Radiology Resident Performance.
J. Digit. Imaging
Jeffrey D. Rudie, Jeffrey T. Duda, Michael Tran Duong, Po-Hao Chen, Long Xie, Robert Kurtz, Jeffrey B. Ware, Joshua Choi, Raghav R. Mattay, Emmanuel J. Botzolakis, James C. Gee, R. Nick Bryan, Tessa Sundaram Cook, Suyash Mohan, Ilya M. Nasrallah, Andreas M. Rauschecker
2021 J jnl
Deformable Image Registration using Neural ODEs.
CoRR
Yifan Wu, Tom Z. Jiahao, Jiancong Wang, Paul A. Yushkevich, James C. Gee, M. Ani Hsieh
2020 — conf
Automated Meshing of Anatomical Shapes for Deformable Medial Modeling: Application to the Placenta in 3D Ultrasound.
ISBI
Alison M. Pouch, Paul A. Yushkevich, Abdullah H. Aly, Alexander H. F. Woltersom, Edidiong Okon, Ahmed H. Aly, Natalie Yushkevich, Shobhana Parameshwaran, Jiancong Wang, Baris U. Oguz, James C. Gee, Ipek Oguz, Nadav Schwartz
2020 A conf
Enhanced generative adversarial network for 3D brain MRI super-resolution.
WACV
Jiancong Wang, Yuhua Chen, Yifan Wu, Jianbo Shi, James C. Gee
2020 — conf
Interpretable Identification of Interstitial Lung Disease (ILD) Associated Findings from CT.
MICCAI (6)
Yifan Wu, Jiancong Wang, William Lindsay, Tarmily Wen, Jianbo Shi, James C. Gee
2020 J jnl
Nested Scale Editing for Conditional Image Synthesis.
CoRR
Lingzhi Zhang, Jiancong Wang, Yinshuang Xu, Jie Min, Tarmily Wen, James C. Gee, Jianbo Shi
2020 A* conf
Nested Scale-Editing for Conditional Image Synthesis.
CVPR
Lingzhi Zhang, Jiancong Wang, Yinshuang Xu, Jie Min, Tarmily Wen, James C. Gee, Jianbo Shi
2020 — conf
Spatially Informed CNN for Automated Cone Detection in Adaptive Optics Retinal Images.
ISBI
Heng jin, Jessica I. W. Morgan, James C. Gee, Min Chen
2019 J jnl
Barnes-Hut Approximation for Point SetGeodesic Shooting.
CoRR
Jiancong Wang, Long Xie, Paul A. Yushkevich, James C. Gee
2019 — conf
Combining Cross Entropy Loss with Manually Defined Hard Example for Semantic Image Segmentation.
ICIG (1)
Zelu Deng, Jianbin Gao, Tao Huang, James C. Gee
2019 J jnl
Enhanced generative adversarial network for 3D brain MRI super-resolution.
CoRR
Jiancong Wang, Yuhua Chen, Yifan Wu, Jianbo Shi, James C. Gee
2019 — conf
Hybird Single-Multiple Frame Super-Resolution Reconstruction of Video Face Image.
ICIG (1)
Jianbin Gao, Huan Tang, James C. Gee
2019 — ed.
Information Processing in Medical Imaging - 26th International Conference, IPMI 2019, Hong Kong, China, June 2-7, 2019, Proceedings
IPMI
Albert C. S. Chung, James C. Gee, Paul A. Yushkevich, Siqi Bao
2019 — conf
Interpretable Multimodality Embedding of Cerebral Cortex Using Attention Graph Network for Identifying Bipolar Disorder.
MICCAI (3)
Huzheng Yang, Xiaoxiao Li, Yifan Wu, Siyi Li, Su Lu, James S. Duncan, James C. Gee, Shi Gu
2019 J jnl
Leveraging Label-Specific Discriminant Mapping Features for Multi-Label Learning.
ACM Trans. Knowl. Discov. Data
Yumeng Guo, Fulai Chung, Guozheng Li, Jiancong Wang, James C. Gee
2019 — conf
Shape Decomposition of Foveal Pit Morphology Using Scan Geometry Corrected OCT.
OMIA@MICCAI
Min Chen, James C. Gee, Jessica I. W. Morgan, Geoffrey Karl Aguirre
2018 — conf
2D Modeling and Correction of Fan-Beam Scan Geometry in OCT.
COMPAY/OMIA@MICCAI
Min Chen, James C. Gee, Jerry L. Prince, Geoffrey Karl Aguirre
2018 C conf
A Blockchain-based Architecture Framework for Secure Sharing of Personal Health Data.
HealthCom
Sandro Amofa, Emmanuel Boateng Sifah, Kwame Opuni-Boachie Obour Agyekum, Abla Smahi, Qi Xia, James C. Gee, Jianbin Gao
2018 J jnl
Chain-based big data access control infrastructure.
J. Supercomput.
Emmanuel Boateng Sifah, Qi Xia, Kwame Opuni-Boachie Obour Agyekum, Sandro Amofa, Jianbin Gao, Ruidong Chen, Hu Xia, James C. Gee, Xiaojiang Du, Mohsen Guizani
2018 — conf
Combining Deep Learning and Multi-atlas Label Fusion for Automated Placenta Segmentation from 3DUS.
DATRA/PIPPI@MICCAI
Baris U. Oguz, Jiancong Wang, Natalie Yushkevich, Alison M. Pouch, James C. Gee, Paul A. Yushkevich, Nadav Schwartz, Ipek Oguz
2018 — conf
Probabilistic Time Context Framework for Big Data Collaborative Recommendation.
ICCAI
Emelia Opoku Aboagye, James C. Gee, Jianbin Gao, Rajesh Kumar, Riaz Ullah Khan
2018 — conf
Transfer Learning Approach to Predict Biopsy-Confirmed Malignancy of Lung Nodules from Imaging Data: A Pilot Study.
RAMBO+BIA+TIA@MICCAI
William Lindsay, Jiancong Wang, Nicholas Sachs, Eduardo Barbosa, James C. Gee
2018 — conf
V-Chain: A Blockchain-Based Car Lease Platform.
iThings/GreenCom/CPSCom/SmartData
Kwame Opuni-Boachie Obour Agyekum, Qi Xia, Emmanuel Boateng Sifah, Sandro Amofa, Kingsley Nketia Acheampong, Jianbin Gao, Ruidong Chen, Hu Xia, James C. Gee, Xiaojiang Du, Mohsen Guizani
2017 — conf
Automated Segmentation of the Choroid in EDI-OCT Images with Retinal Pathology Using Convolution Neural Networks.
FIFI/OMIA@MICCAI
Min Chen, Jiancong Wang, Ipek Oguz, Brian L. Vanderbeek, James C. Gee
2017 J jnl
Multivariate modeling using quantitative CT metrics may improve accuracy of diagnosis of bronchiolitis obliterans syndrome after lung transplantation.
Comput. Biol. Medicine
Eduardo Barbosa Jr., Scott Simpson, James C. Lee, Nicholas J. Tustison, James C. Gee, Haochang Shou
2017 J jnl
Retinal Image Denoising via Bilateral Filter with a Spatial Kernel of Optimally Oriented Line Spread Function.
Comput. Math. Methods Medicine
Yunlong He, Yuanjie Zheng, Yanna Zhao, Yanju Ren, Jian Lian, James C. Gee
2016 — conf
Automatic segmentation of canine retinal OCT using adaptive gradient enhancement and region growing.
Biomedical Applications in Molecular, Structural, and Functional Imaging
Yufan He, Yankui Sun, Min Chen, Yuanjie Zheng, Hui Liu, Cecilia Leon, William Beltran, James C. Gee
2016 J jnl
The Power of Connecting Dots: Advanced Techniques to Evaluate Brain Functional Connectivity in Humans.
IEEE Trans. Biomed. Eng.
Fabio Babiloni, James C. Gee
2015 J jnl
Decomposing cerebral blood flow MRI into functional and structural components: A non-local approach based on prediction.
NeuroImage
Benjamin M. Kandel, Danny J. J. Wang, John A. Detre, James C. Gee, Brian B. Avants
2015 J jnl
Measuring sparse temporal-variation for accurate registration of dynamic contrast-enhanced breast MR images.
Comput. Medical Imaging Graph.
Yuanjie Zheng, Benzheng Wei, Hui Liu, Rui Xiao, James C. Gee
2015 J jnl
Optimal Symmetric Multimodal Templates and Concatenated Random Forests for Supervised Brain Tumor Segmentation (Simplified) with ANTsR.
Neuroinformatics
Nicholas J. Tustison, K. L. Shrinidhi, Max Wintermark, Christopher R. Durst, Benjamin M. Kandel, James C. Gee, Murray C. Grossman, Brian B. Avants
2015 J jnl
Searchable Public-Key Encryption with Data Sharing in Dynamic Groups for Mobile Cloud Storage.
J. Univers. Comput. Sci.
Qi Xia, Jianbing Ni, Ansuura John Bosco Aristotle Kanpogninge, James C. Gee
2014 — conf
Correlation between Topological Descriptors of the Breast Ductal Network from Clinical Galactograms and Texture Features of Corresponding Mammograms.
Digital Mammography / IWDM
Predrag R. Bakic, David D. Pokrajac, Mathew Thomas, Angeliki Skoura, Tatyana Nuzhnaya, Vasileios Megalooikonomou, Brad M. Keller, Yuanjie Zheng, Despina Kontos, James C. Gee, Gilda Cardenosa, Andrew D. A. Maidment
2014 — conf
Cortical parcellation for neonatal brains.
ISBI
Jue Wu, Manzar Ashtari, Laura M. Betancourt, Nancy L. Brodsky, Joan M. Giannetta, James C. Gee, Hallam Hurt, Brian B. Avants
2014 J jnl
Histology-derived volumetric annotation of the human hippocampal subfields in postmortem MRI.
NeuroImage
Daniel H. Adler, John Pluta, Salmon Kadivar, Caryne Craige, James C. Gee, Brian B. Avants, Paul A. Yushkevich
2014 J jnl
Landmark matching based retinal image alignment by enforcing sparsity in correspondence matrix.
Medical Image Anal.
Yuanjie Zheng, Ebenezer Daniel, Allan A. Hunter III, Rui Xiao, Jianbin Gao, Hongsheng Li, Maureen G. Maguire, David H. Brainard, James C. Gee
2014 J jnl
Large-scale evaluation of ANTs and FreeSurfer cortical thickness measurements.
NeuroImage
Nicholas J. Tustison, Philip A. Cook, Arno Klein, Gang Song, Sandhitsu R. Das, Jeffrey T. Duda, Benjamin M. Kandel, Niels van Strien, James R. Stone, James C. Gee, Brian B. Avants
2014 J jnl
Relating brain anatomy and cognitive ability using a multivariate multimodal framework.
NeuroImage
Philip A. Cook, Corey T. McMillan, Brian B. Avants, Jonathan E. Peelle, James C. Gee, Murray Grossman
2014 J jnl
Reproducibility of graph metrics of human brain structural networks.
Frontiers Neuroinformatics
Jeffrey T. Duda, Philip A. Cook, James C. Gee
2014 — conf
Single-Subject Structural Networks with Closed-Form Rotation Invariant Matching Improve Power in Developmental Studies of the Cortex.
MICCAI (3)
Benjamin M. Kandel, Danny J. J. Wang, James C. Gee, Brian B. Avants
2014 J jnl
Subject-specific functional parcellation via Prior Based Eigenanatomy.
NeuroImage
Paramveer S. Dhillon, David A. Wolk, Sandhitsu R. Das, Lyle H. Ungar, James C. Gee, Brian B. Avants
2014 J jnl
The Insight ToolKit image registration framework.
Frontiers Neuroinformatics
Brian B. Avants, Nicholas J. Tustison, James C. Gee, Gang Song, Baohua Wu, Michael Stauffer
2013 — conf
A Generative Model for OCT Retinal Layer Segmentation by Integrating Graph-Based Multi-surface Searching and Image Registration.
MICCAI (1)
Yuanjie Zheng, Rui Xiao, Yan Wang, James C. Gee
2013 — conf
A fully-automated software pipeline for integrating breast density and parenchymal texture analysis for digital mammograms: parameter optimization in a case-control breast cancer risk assessment study.
Computer-Aided Diagnosis
Yuanjie Zheng, Yan Wang, Brad M. Keller, Emily F. Conant, James C. Gee, Despina Kontos
2013 — conf
An automated drusen detection system for classifying age-related macular degeneration with color fundus photographs.
ISBI
Yuanjie Zheng, Brian Vanderbeek, Ebenezer Daniel, Dwight Stambolian, Maureen G. Maguire, David H. Brainard, James C. Gee
2013 — conf
Anatomically-Constrained PCA for Image Parcellation.
PRNI
Paramveer S. Dhillon, James C. Gee, Lyle H. Ungar, Brian B. Avants
2013 — conf
Fusing Functional Signals by Sparse Canonical Correlation Analysis Improves Network Reproducibility.
MICCAI (3)
Jeffrey T. Duda, John A. Detre, Junghoon Kim, James C. Gee, Brian B. Avants
2013 — ed.
Information Processing in Medical Imaging - 23rd International Conference, IPMI 2013, Asilomar, CA, USA, June 28-July 3, 2013. Proceedings
IPMI
James C. Gee, Sarang C. Joshi, Kilian M. Pohl, William M. Wells III, Lilla Zöllei
2013 — conf
Optic Disc and Cup Segmentation from Color Fundus Photograph Using Graph Cut with Priors.
MICCAI (2)
Yuanjie Zheng, Dwight Stambolian, Joan O'Brien, James C. Gee
2013 — conf
Predicting Cognitive Data from Medical Images Using Sparse Linear Regression.
IPMI
Benjamin M. Kandel, David A. Wolk, James C. Gee, Brian B. Avants
2013 J jnl
Single-Image Vignetting Correction from Gradient Distribution Symmetries.
IEEE Trans. Pattern Anal. Mach. Intell.
Yuanjie Zheng, Stephen Lin, Sing Bing Kang, Rui Xiao, James C. Gee, Chandra Kambhamettu
2013 — conf
Texture feature standardization in digital mammography for improving generalizability across devices.
Computer-Aided Diagnosis
Yan Wang, Brad M. Keller, Yuanjie Zheng, Raymond Joseph Acciavatti, James C. Gee, Andrew D. A. Maidment, Despina Kontos
2013 — conf
Using Region Trajectories to Construct an Accurate and Efficient Polyaffine Transform Model.
IPMI
Gang Song, Yang Liu, Baohua Wu, Brian B. Avants, James C. Gee
2012 — conf
A Phantom Study for Assessing the Effect of Different Digital Detectors on Mammographic Texture Features.
Digital Mammography / IWDM
Yan Wang, Brad M. Keller, Yuanjie Zheng, Raymond Joseph Acciavatti, James C. Gee, Andrew D. A. Maidment, Despina Kontos
2012 — conf
A Unified Image Registration Framework for ITK.
WBIR
Brian B. Avants, Nicholas J. Tustison, Gang Song, Baohua Wu, Michael Stauffer, Matthew McCormick, Hans J. Johnson, James C. Gee
2012 J jnl
A diffusion tensor brain template for Rhesus Macaques.
NeuroImage
Nagesh Adluru, Hui Zhang, Andrew S. Fox, Steven E. Shelton, Chad M. Ennis, Anne M. Bartosic, Jonathan A. Oler, Do P. M. Tromp, Elizabeth Zakszewski, James C. Gee, Ned H. Kalin, Andrew L. Alexander
2012 — conf
Agreement between the white matter connectivity based on the tensor-based morphometry and the volumetric white matter parcellations based on diffusion tensor imaging.
ISBI
Seung-Goo Kim, Brian B. Avants, Hyekyoung Lee, James C. Gee, Moo K. Chung, Richard J. Davidson, Jamie L. Hanson, Seth D. Pollak
2012 — conf
Eigenanatomy Improves Detection Power for Longitudinal Cortical Change.
MICCAI (3)
Brian B. Avants, Paramveer S. Dhillon, Benjamin M. Kandel, Philip A. Cook, Corey McMillan, Murray Grossman, James C. Gee
2012 — conf
Partial sparse canonical correlation analysis (PSCCA) for population studies in medical imaging.
ISBI
Paramveer S. Dhillon, Brian B. Avants, Lyle H. Ungar, James C. Gee
2012 — conf
Reconstruction of the human hippocampus in 3D from histology and high-resolution ex-vivo MRI.
ISBI
Daniel H. Adler, Alex Yang Liu, John Pluta, Salmon Kadivar, Sylvia Orozco, Hongzhi Wang, James C. Gee, Brian B. Avants, Paul A. Yushkevich
2012 — conf
Retrospective illumination correction of retinal fundus images from gradient distribution sparsity.
ISBI
Yuanjie Zheng, Brian Vanderbeek, Rui Xiao, Ebenezer Daniel, Dwight Stambolian, Maureen G. Maguire, Joan O'Brien, James C. Gee
2011 J jnl
A Nonconservative Lagrangian Framework for Statistical Fluid Registration - SAFIRA.
IEEE Trans. Medical Imaging
Caroline C. Brun, Natasha Leporé, Xavier Pennec, Yi-Yu Chou, Agatha D. Lee, Greig I. de Zubicaray, Katie McMahon, Margaret J. Wright, James C. Gee, Paul M. Thompson
2011 J jnl
A reproducible evaluation of ANTs similarity metric performance in brain image registration.
NeuroImage
Brian B. Avants, Nicholas J. Tustison, Gang Song, Philip A. Cook, Arno Klein, James C. Gee
2011 — conf
Adaptive Multi-cluster Fuzzy C-Means Segmentation of Breast Parenchymal Tissue in Digital Mammography.
MICCAI (3)
Brad M. Keller, Diane Nathan, Yan Wang, Yuanjie Zheng, James C. Gee, Emily F. Conant, Despina Kontos
2011 J jnl
An Open Source Multivariate Framework for n-Tissue Segmentation with Evaluation on Public Data.
Neuroinformatics
Brian B. Avants, Nicholas J. Tustison, Jue Wu, Philip A. Cook, James C. Gee
2011 — conf
Brain Parcellation Aids in Electrode Localization in Epileptic Patients.
AE-CAI
Jue Wu, Kathryn A. Davis, Allan Azarion, Yuanjie Zheng, Hongzhi Wang, Brian Litt, James C. Gee
2011 J jnl
Evaluation of Registration Methods on Thoracic CT: The EMPIRE10 Challenge.
IEEE Trans. Medical Imaging
Keelin Murphy, Bram van Ginneken, Joseph M. Reinhardt, Sven Kabus, Kai Ding, Xiang Deng, Kunlin Cao, Kaifang Du, Gary E. Christensen, Vincent Garcia, Tom Vercauteren, Nicholas Ayache, Olivier Commowick, Grégoire Malandain, Ben Glocker, Nikos Paragios, Nassir Navab, Vladlena Gorbunova, Jon Sporring, Marleen de Bruijne, Xiao Han, Mattias P. Heinrich, Julia A. Schnabel, Mark Jenkinson, Cristian Lorenz, Marc Modat, Jamie McClelland, Sébastien Ourselin, Sascha E. A. Muenzing, Max A. Viergever, Dante De Nigris, D. Louis Collins, Tal Arbel, Marta Peroni, Rui Li, Gregory C. Sharp, Alexander Schmidt-Richberg, Jan Ehrhardt, René Werner, Dirk Smeets, Dirk Loeckx, Gang Song, Nicholas J. Tustison, Brian B. Avants, James C. Gee, Marius Staring, Stefan Klein, Berend C. Stoel, Martin Urschler, Manuel Werlberger, Jef Vandemeulebroucke, Simon Rit, David Sarrut, Josien P. W. Pluim
2011 — conf
Landmark Matching Based Automatic Retinal Image Registration with Linear Programming and Self-similarities.
IPMI
Yuanjie Zheng, Allan A. Hunter III, Jue Wu, Hongzhi Wang, Jianbin Gao, Maureen G. Maguire, James C. Gee
2011 — conf
Multiscale analysis revisited: Detection of drusen and vessel in digital retinal images.
ISBI
Yuanjie Zheng, Hongzhi Wang, Jue Wu, Jianbin Gao, James C. Gee
2011 J jnl
Point Set Registration Using Havrda-Charvat-Tsallis Entropy Measures.
IEEE Trans. Medical Imaging
Nicholas J. Tustison, Suyash P. Awate, Gang Song, Tessa Sundaram Cook, James C. Gee
2011 — conf
Structural connectivity via the tensor-based morphometry.
ISBI
Seung-Goo Kim, Moo K. Chung, Jamie L. Hanson, Brian B. Avants, James C. Gee, Richard J. Davidson, Seth D. Pollak
2011 J jnl
Topological Well-Composedness and Glamorous Glue: A Digital Gluing Algorithm for Topologically Constrained Front Propagation.
IEEE Trans. Image Process.
Nicholas J. Tustison, Brian B. Avants, Marcelo Siqueira, James C. Gee
2010 — conf
A Computational White Matter Atlas for Aging with Surface-Based Representation of Fasciculi.
WBIR
Hui Zhang, Paul A. Yushkevich, Daniel Rueckert, James C. Gee
2010 J jnl
A tract-specific framework for white matter morphometry combining macroscopic and microscopic tract features.
Medical Image Anal.
Hui Zhang, Suyash P. Awate, Sandhitsu R. Das, John H. Woo, Elias R. Melhem, James C. Gee, Paul A. Yushkevich
2010 — conf
Accurate registration of dynamic contrast-enhanced breast MR images with robust estimation and linear programming.
ISBI
Yuanjie Zheng, Andrew D. A. Maidment, James C. Gee
2010 J jnl
Cerebral cortical folding analysis with multivariate modeling and testing: Studies on gender differences and neonatal development.
NeuroImage
Suyash P. Awate, Paul A. Yushkevich, Zhuang Song, Daniel J. Licht, James C. Gee
2010 J jnl
Cranio-maxillofacial surgery simulation based on pre-specified target face configurations.
J. Zhejiang Univ. Sci. C
Sheng-Zheng Wang, Jie Yang, James C. Gee
2010 J jnl
Dementia induces correlated reductions in white matter integrity and cortical thickness: A multivariate neuroimaging study with sparse canonical correlation analysis.
NeuroImage
Brian B. Avants, Philip A. Cook, Lyle H. Ungar, James C. Gee, Murray Grossman
2010 J jnl
Early parental care is important for hippocampal maturation: Evidence from brain morphology in humans.
NeuroImage
Hengyi Rao, Laura M. Betancourt, Joan M. Giannetta, Nancy L. Brodsky, Marc Korczykowski, Brian B. Avants, James C. Gee, Jiongjiong Wang, Hallam Hurt, John A. Detre, Martha J. Farah
2010 A* conf
Estimation of image bias field with sparsity constraints.
CVPR
Yuanjie Zheng, James C. Gee
2010 J jnl
Evaluation of volume-based and surface-based brain image registration methods.
NeuroImage
Arno Klein, Satrajit S. Ghosh, Brian B. Avants, B. T. Thomas Yeo, Bruce Fischl, Babak A. Ardekani, James C. Gee, J. John Mann, Ramin V. Parsey
2010 — conf
Massive Particles for Brain Tractography.
MICAI (1)
Ramón Aranda, Mariano Rivera, Alonso Ramirez-Manzanares, Manzar Ashtari, James C. Gee
2010 J jnl
N4ITK: Improved N3 Bias Correction.
IEEE Trans. Medical Imaging
Nicholas J. Tustison, Brian B. Avants, Philip A. Cook, Yuanjie Zheng, Alexander Egan, Paul A. Yushkevich, James C. Gee
2010 — conf
Relating Structural and Functional Connectivity to Performance in a Communication Task.
MICCAI (2)
Jeffrey T. Duda, Corey McMillan, Murray Grossman, James C. Gee
2010 — conf
Shape similarity analysis of regions of interest in medical images.
Computer-Aided Diagnosis
Qiang Wang, Amalia Charisi, Longin Jan Latecki, James C. Gee, Vasilis Megalooikonomou
2010 — conf
Sparse Unbiased Analysis of Anatomical Variance in Longitudinal Imaging.
MICCAI (1)
Brian B. Avants, Philip A. Cook, Corey McMillan, Murray Grossman, Nicholas J. Tustison, Yuanjie Zheng, James C. Gee
2010 J jnl
The optimal template effect in hippocampus studies of diseased populations.
NeuroImage
Brian B. Avants, Paul A. Yushkevich, John Pluta, David Minkoff, Marc Korczykowski, John A. Detre, James C. Gee
2009 — conf
A Framework for Craniofacial Surgery Simulation Based on Pre-Specified Target Face Configurations.
ISBI
Sheng-Zheng Wang, James C. Gee, Jie Yang
2009 — conf
A New Information-Theoretic Measure to Control the Robustness-Sensitivity Trade-Off for DMFFD Point-Set Registration.
IPMI
Nicholas J. Tustison, Suyash P. Awate, Gang Song, Tessa Sundaram Cook, James C. Gee
2009 — conf
A Tract-Specific Framework for White Matter Morphometry Combining Macroscopic and Microscopic Tract Features.
MICCAI (1)
Hui Zhang, Suyash P. Awate, Sandhitsu R. Das, John H. Woo, Elias R. Melhem, James C. Gee, Paul A. Yushkevich
2009 J jnl
A high-resolution computational atlas of the human hippocampus from postmortem magnetic resonance imaging at 9.4 T.
NeuroImage
Paul A. Yushkevich, Brian B. Avants, John Pluta, Sandhitsu R. Das, David Minkoff, Dawn Mechanic-Hamilton, Simon Glynn, Stephen Pickup, Weixia Liu, James C. Gee, Murray Grossman, John A. Detre
2009 — conf
Automatic Correction of Intensity Nonuniformity from Sparseness of Gradient Distribution in Medical Images.
MICCAI (1)
Yuanjie Zheng, Murray Grossman, Suyash P. Awate, James C. Gee
2009 — conf
Computational Analysis of HRCT Images for Characterization and Differentiation of ILD and COPD.
ISBI
Gang Song, Eduardo Barbosa Jr., Nicholas J. Tustison, James C. Gee, Warren B. Gefter, Maryl Kreider, Drew A. Torigian
2009 — conf
Denoising Intra-voxel Axon Fiber Orientations by Means of ECQMMF Method.
MICAI
Alonso Ramirez-Manzanares, Mariano Rivera, James C. Gee
2009 J jnl
Directly Manipulated Free-Form Deformation Image Registration.
IEEE Trans. Image Process.
Nicholas J. Tustison, Brian B. Avants, James C. Gee
2009 J jnl
Evaluation of 14 nonlinear deformation algorithms applied to human brain MRI registration.
NeuroImage
Arno Klein, Jesper L. R. Andersson, Babak A. Ardekani, John Ashburner, Brian B. Avants, Ming-Chang Chiang, Gary E. Christensen, D. Louis Collins, James C. Gee, Pierre Hellier, Joo Hyun Song, Mark Jenkinson, Claude Lepage, Daniel Rueckert, Paul M. Thompson, Tom Vercauteren, Roger P. Woods, J. John Mann, Ramin V. Parsey
2009 — conf
Gender Differences in Cerebral Cortical Folding: Multivariate Complexity-Shape Analysis with Insights into Handling Brain-Volume Differences.
MICCAI (1)
Suyash P. Awate, Paul A. Yushkevich, Daniel J. Licht, James C. Gee
2009 J jnl
Morphometric analysis of brain images with reduced number of statistical tests: A study on the gender-related differentiation of the corpus callosum.
Artif. Intell. Medicine
Despina Kontos, Vasileios Megalooikonomou, James C. Gee
2009 — conf
Multivariate High-Dimensional Cortical Folding Analysis, Combining Complexity and Shape, in Neonates with Congenital Heart Disease.
IPMI
Suyash P. Awate, Paul A. Yushkevich, Zhuang Song, Daniel J. Licht, James C. Gee
2009 J jnl
Registration based cortical thickness measurement.
NeuroImage
Sandhitsu R. Das, Brian B. Avants, Murray Grossman, James C. Gee
2009 — conf
Tensor-Based Morphometry of Fibrous Structures with Application to Human Brain White Matter.
MICCAI (1)
Hui Zhang, Paul A. Yushkevich, Daniel Rueckert, James C. Gee
2008 — conf
3D Cerebral Cortical Morphometry in Autism: Increased Folding in Children and Adolescents in Frontal, Parietal, and Temporal Lobes.
MICCAI (1)
Suyash P. Awate, Lawrence Win, Paul A. Yushkevich, Robert T. Schultz, James C. Gee
2008 — conf
A Comparison of Methods for Recovering Intra-voxel White Matter Fiber Architecture from Clinical Diffusion Imaging Scans.
MICCAI (1)
Alonso Ramirez-Manzanares, Philip A. Cook, James C. Gee
2008 — conf
Atlas-guided probabilistic diffusion-tensor fiber tractography.
ISBI
Philip A. Cook, Hui Zhang, Suyash P. Awate, James C. Gee
2008 — conf
Branching medial models for cardiac shape representation.
ISBI
Hui Sun, Brian B. Avants, Alejandro F. Frangi, Sebastián Ordas, James C. Gee, Paul A. Yushkevich
2008 — conf
Building an atlas of hippocampal subfields using postmortem MRI.
ISBI
Paul A. Yushkevich, Brian B. Avants, John Pluta, David Minkoff, Stephen Pickup, Weixia Liu, John A. Detre, Murray Grossman, James C. Gee
2008 — conf
Cardiac Medial Modeling and Time-Course Heart Wall Thickness Analysis.
MICCAI (2)
Hui Sun, Brian B. Avants, Alejandro F. Frangi, Federico Sukno, James C. Gee, Paul A. Yushkevich
2008 J jnl
Digital Brain Atlases for Biomedicine [Life Sciences].
IEEE Signal Process. Mag.
James C. Gee
2008 J jnl
Erratum to "Resolving sentence ambiguity with planning and working memory resources: Evidence from fMRI" [NeuroImage 37 (2007) 361-378].
NeuroImage
Susana Novais-Santos, James C. Gee, Maliha Shah, Vanessa Troiani, Melissa Work, Murray Grossman
2008 — conf
Multivariate analysis of thalamo-cortical connectivity loss in TBI.
CVPR Workshops
Jeffrey T. Duda, Brian B. Avants, Junghoon Kim, Hui Zhang, Sunil Patel, John Whyte, James C. Gee
2008 — conf
Multivariate segmentation of brain tissues by fusion of MRI and DTI data.
ISBI
Suyash P. Awate, Hui Zhang, Tony J. Simon, James C. Gee
2008 — conf
Nonparametric Markov priors for tissue segmentation.
ISBI
Zhuang Song, Suyash P. Awate, James C. Gee
2008 — conf
Point-set registration of tagged HE-3 images using a structurally-based Jensen-Shannon divergence measure within a deterministic annealing framework.
ISBI
Nicholas J. Tustison, Suyash P. Awate, Talissa A. Altes, James C. Gee, Jing Cai, G. Wilson Miller, Eduard E. de Lange, John P. Mugler III
2008 — conf
Robust regularization for the estimation of intra-voxel axon fiber orientations.
CVPR Workshops
Alonso Ramirez-Manzanares, Hui Zhang, Mariano Rivera, James C. Gee
2008 — conf
Shape-Based Alignment of Hippocampal Subfields: Evaluation in Postmortem MRI.
MICCAI (1)
Paul A. Yushkevich, Brian B. Avants, John Pluta, David Minkoff, John A. Detre, Murray Grossman, James C. Gee
2008 — conf
Spatial correspondence based asymmetry analysis in FMRI.
ISBI
Sandhitsu R. Das, Dawn Mechanic-Hamilton, Marc Korczykowski, Brian B. Avants, John A. Detre, James C. Gee, Paul A. Yushkevich
2008 J jnl
Structural consequences of diffuse traumatic brain injury: A large deformation tensor-based morphometry study.
NeuroImage
Junghoon Kim, Brian B. Avants, Sunil Patel, John Whyte, H. Branch Coslett, John Pluta, John A. Detre, James C. Gee
2008 J jnl
Structure-specific statistical mapping of white matter tracts.
NeuroImage
Paul A. Yushkevich, Hui Zhang, Tony J. Simon, James C. Gee
2008 — conf
Surface-based modeling of white matter fasciculi with orientation encoding.
ISBI
Hui Zhang, Paul A. Yushkevich, Tony J. Simon, James C. Gee
2008 J jnl
Symmetric diffeomorphic image registration with cross-correlation: Evaluating automated labeling of elderly and neurodegenerative brain.
Medical Image Anal.
Brian B. Avants, Charles L. Epstein, Murray Grossman, James C. Gee
2008 J jnl
Topological Repairing of 3D Digital Images.
J. Math. Imaging Vis.
Marcelo Siqueira, Longin Jan Latecki, Nicholas J. Tustison, Jean H. Gallier, James C. Gee
2007 — conf
A Fuzzy, Nonparametric Segmentation Framework for DTI and MRI Analysis.
IPMI
Suyash P. Awate, James C. Gee
2007 J jnl
A Fuzzy, Nonparametric Segmentation Framework for DTI and MRI Analysis: With Applications to DTI-Tract Extraction.
IEEE Trans. Medical Imaging
Suyash P. Awate, Hui Zhang, James C. Gee
2007 — conf
Clinical Neonatal Brain MRI Segmentation Using Adaptive Nonparametric Data Models and Intensity-Based Markov Priors.
MICCAI (1)
Zhuang Song, Suyash P. Awate, Daniel J. Licht, James C. Gee
2007 — conf
Evaluation of Shape-Based Normalization in the Corpus Callosum for White Matter Connectivity Analysis.
MICCAI (2)
Hui Sun, Paul A. Yushkevich, Hui Zhang, Philip A. Cook, Jeffrey T. Duda, Tony J. Simon, James C. Gee
2007 — conf
Fuzzy Nonparametric DTI Segmentation for Robust Cingulum-Tract Extraction.
MICCAI (1)
Suyash P. Awate, Hui Zhang, James C. Gee
2007 J jnl
Guest editorial: Special Issue on Computational Neuroanatomy.
IEEE Trans. Medical Imaging
James C. Gee, Paul M. Thompson
2007 J jnl
High-Dimensional Spatial Normalization of Diffusion Tensor Images Improves the Detection of White Matter Differences: An Example Study Using Amyotrophic Lateral Sclerosis.
IEEE Trans. Medical Imaging
Hui Zhang, Brian B. Avants, Paul A. Yushkevich, John H. Woo, Sumei Wang, L. F. McCluskey, L. B. Elman, Elias R. Melhem, James C. Gee
2007 J jnl
Hippocampus-specific fMRI group activation analysis using the continuous medial representation.
NeuroImage
Paul A. Yushkevich, John A. Detre, Dawn Mechanic-Hamilton, María A. Fernández-Seara, Kathy Z. Tang, Angela Hoang, Marc Korczykowski, Hui Zhang, James C. Gee
2007 — conf
How Do Registration Parameters Affect Quantitation of Lung Kinematics?
MICCAI (1)
Tessa Sundaram Cook, Nicholas J. Tustison, Jürgen Biederer, Ralf Tetzlaff, James C. Gee
2007 A* conf
Improved FFD B-Spline Image Registration.
ICCV
Nicholas J. Tustison, Brian B. Avants, James C. Gee
2007 A* conf
Measuring Cortical Thickness Using An Image Domain Local Surface Model And Topology Preserving Segmentation.
ICCV
Sandhitsu R. Das, Brian B. Avants, Murray Grossman, James C. Gee
2007 A* conf
Multi-start Method with Prior Learning for Image Registration.
ICCV
Gang Song, Brian B. Avants, James C. Gee
2007 — conf
Multivariate Normalization with Symmetric Diffeomorphisms for Multivariate Studies.
MICCAI (1)
Brian B. Avants, Jeffrey T. Duda, Hui Zhang, James C. Gee
2007 J jnl
Multivariate examination of brain abnormality using both structural and functional MRI.
NeuroImage
Yong Fan, Hengyi Rao, Hallam Hurt, Joan M. Giannetta, Marc Korczykowski, David Shera, Brian B. Avants, James C. Gee, Jiongjiong Wang, Dinggang Shen
2007 J jnl
Neuroinformatics for Genome-Wide 3-D Gene Expression Mapping in the Mouse Brain.
IEEE ACM Trans. Comput. Biol. Bioinform.
Lydia Ng, Sayan D. Pathak, Chihchau Kuan, Christopher Lau, Hong-wei Dong, Andrew Sodt, Chinh Dang, Brian B. Avants, Paul A. Yushkevich, James C. Gee, David R. Haynor, Ed S. Lein, Allan Jones, Michael Hawrylycz
2007 — conf
Non-Uniform Smoothing in Hippocampus-Specific Group Fmri Analysis.
ISBI
Paul A. Yushkevich, John A. Detre, James C. Gee
2007 — conf
Pulmonary Kinematics from Hyperpolarized Helium-3 Tagged Magnetic Resonance Imaging.
ISBI
Nicholas J. Tustison, Talissa A. Altes, James C. Gee, Jing Cai, Eduard E. de Lange, John P. Mugler III
2007 J jnl
Resolving sentence ambiguity with planning and working memory resources: Evidence from fMRI.
NeuroImage
Susana Novais-Santos, James C. Gee, Maliha Shah, Vanessa Troiani, Melissa Work, Murray Grossman
2007 J jnl
Shape-Based Normalization of the Corpus Callosum for DTI Connectivity Analysis.
IEEE Trans. Medical Imaging
Hui Sun, Paul A. Yushkevich, Hui Zhang, Philip A. Cook, Jeffrey T. Duda, Tony J. Simon, James C. Gee
2007 — conf
Spatiotemporal Normalization for Longitudinal Analysis of Gray Matter Atrophy in Frontotemporal Dementia.
MICCAI (2)
Brian B. Avants, Chivon Anderson, Murray Grossman, James C. Gee
2007 A* conf
Structure-Specific Statistical Mapping of White Matter Tracts using the Continuous Medial Representation.
ICCV
Paul A. Yushkevich, Hui Zhang, Tony J. Simon, James C. Gee
2007 — conf
Symmetric Shape Averaging in the Diffeomorphic Space.
ISBI
Brian B. Avants, Charles L. Epstein, James C. Gee
2007 — conf
Unbiased White Matter Atlas Construction Using Diffusion Tensor Images.
MICCAI (2)
Hui Zhang, Paul A. Yushkevich, Daniel Rueckert, James C. Gee
2006 — conf
3D Mouse Brain Reconstruction from Histology Using a Coarse-to-Fine Approach.
WBIR
Paul A. Yushkevich, Brian B. Avants, Lydia Ng, Michael Hawrylycz, Pablo D. Burstein, Hui Zhang, James C. Gee
2006 — conf
A Generalization of Free-Form Deformation Image Registration Within the ITK Finite Element Framework.
WBIR
Nicholas J. Tustison, Brian B. Avants, Tessa A. Sundaram, Jeffrey T. Duda, James C. Gee
2006 — conf
Adaptive graph cuts with tissue priors for brain MRI segmentation.
ISBI
Zhuang Song, Nicholas J. Tustison, Brian B. Avants, James C. Gee
2006 — conf
Analyzing Effects of Intra-Uterine Cocaine Exposure on Adolescent Brain Structure with Symmetric Diffeomorphisms.
CVPR Workshops
Brian B. Avants, Hallam Hurt, Joan M. Giannetta, Charles L. Epstein, Jiongjiong Wang, James C. Gee
2006 — ch.
Anatomy-Based Visualizations of Diffusion Tensor Images of Brain White Matter.
Visualization and Processing of Tensor Fields
James C. Gee, Hui Zhang, Abraham Dubb, Brian B. Avants, Paul A. Yushkevich, Jeffrey T. Duda
2006 J jnl
Continuous Medial Representation for Anatomical Structures.
IEEE Trans. Medical Imaging
Paul A. Yushkevich, Hui Zhang, James C. Gee
2006 J jnl
Deformable registration of diffusion tensor MR images with explicit orientation optimization.
Medical Image Anal.
Hui Zhang, Paul A. Yushkevich, Daniel C. Alexander, James C. Gee
2006 — ch.
Diffusion-Tensor Image Registration.
Visualization and Processing of Tensor Fields
James C. Gee, Daniel C. Alexander
2006 J jnl
Editorial.
Medical Image Anal.
J. B. Antoine Maintz, James C. Gee
2006 — conf
Efficient Generation of Shape-Based Reference Frames for the Corpus Callosum for DTI-based Connectivity Analysis.
CVPR Workshops
Hui Sun, Paul A. Yushkevich, Hui Zhang, James C. Gee, Tony J. Simon
2006 — conf
Generalized
MIAR
Nicholas J. Tustison, James C. Gee
2006 — conf
Geodesic Image Normalization and Temporal Parameterization in the Space of Diffeomorphisms.
MIAR
Brian B. Avants, Charles L. Epstein, James C. Gee
2006 — conf
Hippocampus-Specific fMRI Group Activation Analysis with Continuous M-Reps.
MICCAI (2)
Paul A. Yushkevich, John A. Detre, Kathy Z. Tang, Angela Hoang, Dawn Mechanic-Hamilton, María A. Fernández-Seara, Marc Korczykowski, Hui Zhang, James C. Gee
2006 — conf
Integrated Graph Cuts for Brain MRI Segmentation.
MICCAI (2)
Zhuang Song, Nicholas J. Tustison, Brian B. Avants, James C. Gee
2006 J jnl
Lagrangian frame diffeomorphic image registration: Morphometric comparison of human and chimpanzee cortex.
Medical Image Anal.
Brian B. Avants, P. Thomas Schoenemann, James C. Gee
2006 J jnl
Pulmonary nodule detection in CT images with quantized convergence index filter.
Medical Image Anal.
Sumiaki Matsumoto, Harold L. Kundel, James C. Gee, Warren B. Gefter, Hiroto Hatabu
2006 — conf
Symmetric Diffeomorphic Image Registration: Evaluating Automated Labeling of Elderly and Neurodegenerative Cortex and Frontal Lobe.
WBIR
Brian B. Avants, Murray Grossman, James C. Gee
2006 J jnl
User-guided 3D active contour segmentation of anatomical structures: Significantly improved efficiency and reliability.
NeuroImage
Paul A. Yushkevich, Joseph Piven, Heather Cody Hazlett, Rachel Gimpel Smith, Sean Ho, James C. Gee, Guido Gerig
2005 A conf
An Automated Approach to Connectivity-Based Partitioning of Brain Structures.
MICCAI
Philip A. Cook, Hui Zhang, Brian B. Avants, Paul A. Yushkevich, Daniel C. Alexander, James C. Gee, Olga Ciccarelli, Alan J. Thompson
2005 J jnl
Constrained quadrilateral meshes of bounded size.
Int. J. Comput. Geom. Appl.
Suneeta Ramaswami, Marcelo Siqueira, Tessa A. Sundaram, Jean H. Gallier, James C. Gee
2005 A conf
Deformable Registration of Diffusion Tensor MR Images with Explicit Orientation Optimization.
MICCAI
Hui Zhang, Paul A. Yushkevich, James C. Gee
2005 — conf
Geodesic Image Interpolation: Parameterizing and Interpolating Spatiotemporal Images.
VLSM
Brian B. Avants, Charles L. Epstein, James C. Gee
2005 — conf
Parametric Medial Shape Representation in 3-D via the Poisson Partial Differential Equation with Non-linear Boundary Conditions.
IPMI
Paul A. Yushkevich, Hui Zhang, James C. Gee
2005 B conf
Reducing the Computational Cost for Statistical Medical Image Analysis: An MRI Study on the Sexual Morphological Differentiation of the Corpus Callosum.
CBMS
Despina Kontos, Vasileios Megalooikonomou, James C. Gee
2005 — conf
Statistical Modeling of Shape and Appearance Using the Continuous Medial Representation.
MICCAI (2)
Paul A. Yushkevich, Hui Zhang, James C. Gee
2005 — conf
Towards a Dynamic Model of Pulmonary Parenchymal Deformation: Evaluation of Methods for Temporal Reparameterization of Lung Data.
MICCAI (2)
Tessa A. Sundaram, Brian B. Avants, James C. Gee
2005 J jnl
Towards a model of lung biomechanics: pulmonary kinematics via registration of serial lung images.
Medical Image Anal.
Tessa A. Sundaram, James C. Gee
2005 J jnl
Volumetric, connective, and morphologic changes in the brains of children with chromosome 22q11.2 deletion syndrome: an integrative study.
NeuroImage
Tony J. Simon, Lijun Ding, Joel P. Bish, Donna M. McDonald-McGinn, Elaine H. Zackai, James C. Gee
2004 — conf
A Dynamic Model of Average Lung Deformation Using Capacity-Based Reparameterization and Shape Averaging of Lung MR Images.
MICCAI (2)
Tessa A. Sundaram, Brian B. Avants, James C. Gee
2004 — conf
Regional Structural Characterization of the Brain of Schizophrenia Patients.
MICCAI (2)
Abraham Dubb, Paul A. Yushkevich, Zhiyong Xie, Ruben C. Gur, Raquel E. Gur, James C. Gee
2004 — conf
Registration of Diffusion Tensor Images.
CVPR (1)
Hui Zhang, Paul A. Yushkevich, James C. Gee
2004 — conf
Shape Averaging with Diffeomorphic Flows for Atlas Creation.
ISBI
Brian B. Avants, James C. Gee
2004 J jnl
Structural shape characterization via exploratory factor analysis.
Artif. Intell. Medicine
Alexei Manso Corrêa Machado, James C. Gee, Mario Fernando Montenegro Campos
2004 — conf
Symmetric Geodesic Shape Averaging and Shape Interpolation.
ECCV Workshops CVAMIA and MMBIA
Brian B. Avants, James C. Gee
2004 — conf
Towards Diffusion Profile Image Registration.
ISBI
Hui Zhang, Paul A. Yushkevich, James C. Gee
2004 A conf
Two--level MRF Models for Image Restoration and Segmentation.
BMVC
Mariano Rivera, James C. Gee
2004 J jnl
Visual data mining for modeling prior distributions in morphometry.
IEEE Signal Process. Mag.
Alexei Manso Corrêa Machado, James C. Gee, Mario Fernando Montenegro Campos
2003 — conf
A New Algorithm for Generating Quadrilateral Meshes and its Application to FE-Based Image Registration.
IMR
Suneeta Ramaswami, Marcelo Siqueira, Tessa A. Sundaram, Jean H. Gallier, James C. Gee
2003 B conf
A method for non-rigid registration of diffusion tensor magnetic resonance images.
Image Processing
Jeffrey T. Duda, Mariano Rivera, Daniel C. Alexander, James C. Gee
2003 J jnl
Bayesian model for intensity mapping in magnetic resonance image registration.
J. Electronic Imaging
Alexei Manso Corrêa Machado, Mario Fernando Montenegro Campos, James C. Gee
2003 — ed.
Biomedical Image Registration, Second International Workshop, WBIR 2003, Philadelphia, PA, USA, June 23-24, 2003, Revised Papers
WBIR
James C. Gee, J. B. Antoine Maintz, Michael W. Vannier
2003 — conf
Characterization of Brain Plasticity in Schizophrenia Using Template Deformation.
MICCAI (2)
Abraham Dubb, Zhiyong Xie, Ruben C. Gur, Raquel E. Gur, James C. Gee
2003 J jnl
Characterization of sexual dimorphism in the human corpus callosum.
NeuroImage
Abraham Dubb, Ruben C. Gur, Brian B. Avants, James C. Gee
2003 — conf
Continuous Curve Matching with Scale-Space Curvature and Extrema-Based Scale Selection.
Scale-Space
Brian B. Avants, James C. Gee
2003 — conf
Formulation and Evaluation of Variational Curve Matching with Prior Constraints.
WBIR
Brian B. Avants, James C. Gee
2003 J jnl
Guest Editorial: Special Section on Model-based Medical Image Processing and Analysis.
J. Electronic Imaging
James C. Gee, Mostafa Analoui
2003 J jnl
Point similarity measures for non-rigid registration of multi-modal data.
Comput. Vis. Image Underst.
Peter Rogelj, Stanislav Kovacic, James C. Gee
2003 B conf
Tensor scale-based image registration.
Image Processing
Punam K. Saha, Hui Zhang, Jayaram K. Udupa, James C. Gee
2003 — conf
The Shape Operator for Differential Analysis of Images.
IPMI
Brian B. Avants, James C. Gee
2003 B conf
Two algorithms for non-rigid image registration and their evaluation.
Image Processing
Zhiyong Xie, Lydia Ng, James C. Gee
2002 J jnl
Age-Related Changes in Working Memory during Sentence Comprehension: An fMRI Study.
NeuroImage
Murray Grossman, Ayanna Cooke, Christian Devita, David C. Alsop, John A. Detre, Willis Chen, James C. Gee
2002 — conf
Characterization of Regional Pulmonary Mechanics from Serial MRI Data.
MICCAI (1)
James C. Gee, Tessa A. Sundaram, Ichiro Hasegawa, Hidemasa Uematsu, Hiroto Hatabu
2002 — conf
Efficient Partial Volume Tissue Classification in MRI Scans.
MICCAI (1)
Aljaz Noe, James C. Gee
2002 — conf
Image Segmentation by Flexible Models Based on Robust Regularized Networks.
ECCV (3)
Mariano Rivera, James C. Gee
2002 B conf
Method for quantitative assessment of atherosclerotic lesion burden on the basis of high-resolution black-blood MRI.
Image Processing
Jeffrey T. Duda, Hee Kwon Song, Ronald Wolf, Alex C. Wright, James C. Gee, Felix W. Wehrli
2002 — conf
Non-rigid registration of diffusion tensor MR images.
ISBI
James C. Gee, Daniel C. Alexander, Mariano Rivera, Jeffrey T. Duda
2002 B conf
Novel spatial interaction prior for Bayesian image segmentation and restoration.
Image Processing
Mariano Rivera, James C. Gee
2002 — conf
Registration patterns: the generic framework for image registration of the insight toolkit.
ISBI
Luis Ibáñez, Lydia Ng, James C. Gee, Stephen R. Aylward
2002 — conf
Robust rotations between anatomical curves.
ISBI
Brian B. Avants, James C. Gee
2002 J jnl
Sexual Dimorphism in the Corpus Callosum: A Characterization of Local Size Variations and a Classification Driven Approach to Morphometry.
NeuroImage
David J. Pettey, James C. Gee
2002 Misc conf
Shape Characterization of the Corpus Callosum in Schizophrenia Using Template Deformation.
AMIA
Abraham Dubb, Brian B. Avants, Ruben C. Gur, James C. Gee
2002 — conf
Shape Characterization of the Corpus Callosum in Schizophrenia Using Template Deformation.
MICCAI (2)
Abraham Dubb, Brian B. Avants, Ruben C. Gur, James C. Gee
2002 B conf
Soft parametric curve matching in scale-space.
Image Processing
Brian B. Avants, James C. Gee
2002 — conf
Substructural Segmentation Based on Regional Shape Differences.
SIBGRAPI
Alexei Manso Corrêa Machado, James C. Gee, Mario Fernando Montenegro Campos
2002 J jnl
The Neural Basis for Category-Specific Knowledge: An fMRI Study.
NeuroImage
Murray Grossman, Phyllis Koenig, Christian Devita, Guila Glosser, David C. Alsop, John A. Detre, James C. Gee
2002 — conf
Using Voxel-Based Morphometry to Examine Atrophy-Behavior Correlates in Alzheimer's Disease and Frontotemporal Dementia.
MICCAI (1)
Michael P. Lin, Christian Devita, James C. Gee, Murray Grossman
2002 B conf
Validation of a nonrigid registration algorithm for multimodal data.
Image Processing
Peter Rogelj, Stanislav Kovacic, James C. Gee
2001 B conf
Characterizing populations and searching for diagnostics via elastic registration of MRI images.
Image Processing
David J. Pettey, James C. Gee
2001 A conf
Computing Match Functions for Curves in R
MICCAI
Brian B. Avants, Marcelo Siqueira, James C. Gee
2001 B conf
Factor analysis of high-dimensional heterogeneous data for structural characterization.
Image Processing
Alexei Manso Corrêa Machado, James C. Gee, Mario F. M. Campos
2001 — conf
Partial Volume Segmentation of Cerebral MRI Scans with Mixture Model Clustering.
IPMI
Aljaz Noe, James C. Gee
2001 B conf
Segmentation of cerebral MRI scans using a partial volume model, shading correction, and an anatomical prior.
Image Processing
Aljaz Noe, Stanislav Kovacic, James C. Gee
2001 J jnl
Spatial Transformations of Diffusion Tensor Magnetic Resonance Images.
IEEE Trans. Medical Imaging
Daniel C. Alexander, Carlo Pierpaoli, Peter J. Basser, James C. Gee
2001 — conf
Using a Linear Diagnostic Function and Non-rigid Registration to Search for Morphological Differences Between Populations: An Example Involving the Male and Female Corpus Callosum.
IPMI
David J. Pettey, James C. Gee
2001 B conf
Validation of brain segmentation and tissue classification algorithm for T1-weighted MR images.
Image Processing
Vikram Chalana, Lydia Ng, Larry R. Rystrom, James C. Gee, David R. Haynor
2000 J jnl
Elastic Matching of Diffusion Tensor Images.
Comput. Vis. Image Underst.
Daniel C. Alexander, James C. Gee
2000 B conf
Exploratory and confirmatory factor analysis in morphometry.
Image Processing
Alexei Manso Corrêa Machado, James C. Gee, Mario F. M. Campos
2000 B conf
Performance evaluation of medical image processing algorithms.
Image Processing
James C. Gee
2000 — conf
Probabilistic Intensity Mapping in MRI Image Registration.
SIBGRAPI
Alexei Manso Corrêa Machado, Mario Fernando Montenegro Campos, James C. Gee
2000 B conf
Techniques for spatial normalization of diffusion tensor images.
Image Processing
Daniel C. Alexander, Carlo Pierpaoli, Peter J. Basser, James C. Gee
1999 A* conf
Elastic Matching of Diffusion Tensor MRIs.
CVPR
Daniel C. Alexander, James C. Gee, Ruzena Bajcsy
1999 A conf
Exploratory Factor Analysis in Morphometry.
MICCAI
Alexei Manso Corrêa Machado, James C. Gee, Mario Fernando Montenegro Campos
1999 B conf
Likelihood estimation in image warping.
Image Processing
Alexei Manso Corrêa Machado, Mario F. M. Campos, James C. Gee
1999 — conf
Method for Estimating the Intensity Mapping between MRI Images.
IPMI
Alexei Manso Corrêa Machado, Mario Fernando Montenegro Campos, James C. Gee
1999 B conf
New experimental results in atlas-based brain morphometry.
Image Processing
James C. Gee, Brian A. Fabella, Siddharth E. Fernandes, Bruce I. Turetsky, Ruben C. Gur, Raquel E. Gur
1999 J jnl
On matching brain volumes.
Pattern Recognit.
James C. Gee
1999 A conf
Similarity Measures for Matching Diffusion Tensor Images.
BMVC
Daniel C. Alexander, James C. Gee, Ruzena Bajcsy
1999 A conf
Strategies for Data Reorientation during Non-rigid Warps of Diffusion Tensor Images.
MICCAI
Daniel C. Alexander, James C. Gee, Ruzena Bajcsy
1998 B conf
Atlas warping for brain morphometry.
Image Processing
Alexei Manso Corrêa Machado, James C. Gee
1998 — conf
Density estimation for MR image elastic matching.
SIBGRAPI
Alexei M. C. Machado, James C. Gee, Mario F. M. Campos
1997 — conf
Advances in elastic matching theory and its implementation.
CVRMed
James C. Gee, David R. Haynor, Lionel Le Briquer, Ruzena Bajcsy
1997 — conf
Design of a Statistical Model of Brain Shape.
IPMI
Lionel Le Briquer, James C. Gee
1996 B conf
Rapid coarse-to-fine matching using scale-specific priors.
Image Processing
James C. Gee, David R. Haynor
1994 — conf
Matching structural images of the human brain using statistical and geometrical image features.
VBC
James C. Gee, Christian Barillot, Lionel Le Briquer, David R. Haynor, Ruzena Bajcsy
1993 J jnl
User Interface Design for Medical Imaging Workstations: Image Display and Processing.
Interact. Comput.
James C. Gee, Woodrow Barfield, David R. Haynor, Yongmin Kim