James C. Costello

15 papers A 1C 1Misc 2Journal 8Unranked 3
YearRankTypeTitle / Venue / Authors
2025 J jnl
GRACKLE: an interpretable matrix factorization approach for biomedical representation learning.
Bioinform.
Lucas A. Gillenwater, Lawrence E. Hunter, James C. Costello
2025 J jnl
The life cycle of challenges and benchmarks.
J. Data-centric Mach. Learn. Res.
Gustavo Stolovitzky, Julio Saez-Rodriguez, Julie Bletz, Jake Albrecht, Gaia Andreoletti, James C. Costello, Paul C. Boutros
2023 J jnl
AI Competitions and Benchmarks: The life cycle of challenges and benchmarks.
CoRR
Gustavo Stolovitzky, Julio Saez-Rodriguez, Julie Bletz, Jacob Albrecht, Gaia Andreoletti, James C. Costello, Paul C. Boutros
2022 J jnl
SOPHIE: Generative Neural Networks Separate Common and Specific Transcriptional Responses.
Genom. Proteom. Bioinform.
Alexandra J. Lee, Dallas L. Mould, Jake Crawford, Dongbo Hu, Rani K. Powers, Georgia Doing, James C. Costello, Deborah A. Hogan, Casey S. Greene
2018 J jnl
GSEA-InContext: identifying novel and common patterns in expression experiments.
Bioinform.
Rani K. Powers, Andrew Goodspeed, Harrison Pielke-Lombardo, Aik Choon Tan, James C. Costello
2018 J jnl
Simulating heterogeneous populations using Boolean models.
BMC Syst. Biol.
Brian C. Ross, Mayla Boguslav, Holly Weeks, James C. Costello
2017 Misc conf
A Spatiotemporal Model to Simulate Chemotherapy Regimens for Heterogeneous Bladder Cancer Metastases to the Lung.
PSB
Kimberly R. Kanigel Winner, James C. Costello
2015 J jnl
DREAMTools: a Python package for scoring collaborative challenges.
F1000Research
Thomas Cokelaer, Mukesh Bansal, Christopher Bare, Erhan Bilal, Brian M. Bot, Elias Chaibub Neto, Federica Eduati, Mehmet Gönen, Steven M. Hill, Bruce R. Hoff, Jonathan R. Karr, Robert Küffner, Michael P. Menden, Pablo Meyer, Raquel Norel, Abhishek Pratap, Robert J. Prill, Matthew T. Weirauch, James C. Costello, Gustavo Stolovitzky, Julio Saez-Rodriguez
2009 J jnl
All Human-Specific Gene Losses Are Present in the Genome as Pseudogenes.
J. Comput. Biol.
Daniel R. Schrider, James C. Costello, Matthew W. Hahn
2009 Misc conf
Data-Driven Ontologies.
Pacific Symposium on Biocomputing
James C. Costello, Daniel R. Schrider, Jeff Gehlhausen, Mehmet M. Dalkilic
2008 — conf
Limitations of Pseudogenes in Identifying Gene Losses.
RECOMB-CG
James C. Costello, Mira V. Han, Matthew W. Hahn
2007 C conf
Using Drosophila melanogaster Data to Discover Disease-Related Protein Interactions in Humans.
CIBCB
James C. Costello, Jade E. Buchanan-Carter, Mehmet M. Dalkilic, Justen Andrews
2006 A conf
Using Compression to Identify Classes of Inauthentic Texts.
SDM
Mehmet M. Dalkilic, Wyatt T. Clark, James C. Costello, Predrag Radivojac
2004 — conf
Semantic thumbnails: a novel method for summarizing document collections.
SIGDOC
Arijit Sengupta, Mehmet M. Dalkilic, James C. Costello
2004 — conf
TREC 2004 Genomics Track Experiments at IUB.
TREC
Kazuhiro Seki, James C. Costello, Vasanth R. Singan, Javed Mostafa