James A. White

24 papers B 1Journal 8Unranked 15
YearRankTypeTitle / Venue / Authors
2025 J jnl
npj Digit. Medicine
Steven Dykstra, Matthew MacDonald, Rhys Beaudry, Dina Labib, Melanie King, Yuanchao Feng, Jacqueline Flewitt, Jeff Bakal, Bing Lee, Stafford Dean, Marina L. Gavrilova, Paul W. M. Fedak, James A. White
2025 J jnl
npj Digit. Medicine
Fereshteh Hasanzadeh, Colin Bruce Josephson, Gabriella Waters, Demilade Adedinsewo, Zahra Azizi, James A. White
2025 J jnl
npj Digit. Medicine
Peyman Ghasemi, Matthew Greenberg, Danielle A. Southern, Bing Li, James A. White, Joon Lee
2025 J jnl
BMC Medical Imaging
Shirin Aliabadi, Dina Labib, Sandra Rivest, James A. White, Julio Garcia
2022 conf
Biomedical Applications in Molecular, Structural, and Functional Imaging
Nadia A. Farrag, Sathvik Bhagavan, David Sebben, Poojani Ruwanpura, James A. White, Eranga Ukwatta
2022 J jnl
IEEE J. Biomed. Health Informatics
Mingquan Lin, Mingjie Jiang, Mingbo Zhao, Eranga Ukwatta, James A. White, Bernard Chiu
2019 conf
Computer-Aided Diagnosis
Fatemeh Zabihollahy, James A. White, Eranga Ukwatta
2019 conf
Biomedical Applications in Molecular, Structural, and Functional Imaging
Nadia A. Farrag, James A. White, Eranga Ukwatta
2018 conf
Biomedical Applications in Molecular, Structural, and Functional Imaging
Fatma Usta, Wail Gueaieb, James A. White, Eranga Ukwatta
2018 conf
Biomedical Applications in Molecular, Structural, and Functional Imaging
Fatma Usta, Wail Gueaieb, James A. White, Conor McKeen, Eranga Ukwatta
2018 conf
Computer-Aided Diagnosis
Fatemeh Zabihollahy, James A. White, Eranga Ukwatta
2015 B conf
Image Processing
Eranga Ukwatta, Martin Rajchl, James A. White, Farhad Pashakhanloo, Daniel A. Herzka, Elliot R. McVeigh, Albert C. Lardo, Natalia A. Trayanova, Fijoy Vadakkumpadan
2015 conf
Biomedical Applications in Molecular, Structural, and Functional Imaging
Seyyed M. H. Haddad, Maria Drangova, James A. White, Abbas Samani
2015 J jnl
IEEE Trans. Medical Imaging
Feng P. Li, Martin Rajchl, James A. White, Aashish Goela, Terry M. Peters
2014 conf
Image-Guided Procedures
Martin Rajchl, Kamyar Abhari, John Stirrat, Eranga Ukwatta, Diego Cantor, Feng P. Li, Terry M. Peters, James A. White
2014 J jnl
IEEE Trans. Medical Imaging
Martin Rajchl, Jing Yuan, James A. White, Eranga Ukwatta, John Stirrat, Cyrus M. S. Nambakhsh, Feng P. Li, Terry M. Peters
2014 conf
Image-Guided Procedures
Jiro Inoue, Allan C. Skanes, James A. White, Martin Rajchl, Maria Drangova
2013 conf
IPCAI
Feng Li, Martin Rajchl, James A. White, Aashish Goela, Terry M. Peters
2013 conf
AE-CAI
Feng P. Li, Martin Rajchl, James A. White, Aashish Goela, Terry M. Peters
2012 conf
MICCAI (2)
Abraam S. Soliman, Jing Yuan, James A. White, Terry M. Peters, Charles A. McKenzie
2012 conf
MICCAI (1)
Martin Rajchl, Jing Yuan, James A. White, Cyrus M. S. Nambakhsh, Eranga Ukwatta, Feng Li, John Stirrat, Terry M. Peters
2012 conf
AE-CAI
Feng Li, James A. White, Martin Rajchl, Aashish Goela, Terry M. Peters
2009 conf
ISBI
Qi Zhang, Roy Eagleson, Terry M. Peters, James A. White
2009 J jnl
Internet High. Educ.
Marie A. Tapanes, Glenn Gordon Smith, James A. White
redb/extractors/decompiler/apk/jadx_wrapper.py
← Index redb/extractors/decompiler/apk/jadx_wrapper.py python
"""JADX decompiler subprocess wrapper.

Manages JADX subprocess execution for Java decompilation,
following the CAPA extractor subprocess pattern.
"""

import os
import re
import signal
import subprocess
from typing import Dict, Optional


class JADXDecompiler:
    """Subprocess wrapper for JADX Java decompilation."""

    def __init__(self, jadx_path: str = None, timeout: int = None, log=None):
        self.jadx_path = jadx_path or os.getenv("JADX_PATH", "jadx")
        self.timeout = timeout or int(os.getenv("JADX_TIMEOUT", "300"))
        self.log = log

    def decompile(self, apk_path: str, output_dir: str) -> bool:
        """Run JADX decompilation on an APK file.

        Returns True on success, False on failure.
        """
        cmd = [
            self.jadx_path,
            "--no-res",
            "--no-imports",
            "--threads-count", "2",
            "--output-dir", output_dir,
            apk_path,
        ]

        try:
            process = subprocess.Popen(
                cmd,
                stdout=subprocess.PIPE,
                stderr=subprocess.PIPE,
                text=True,
                preexec_fn=os.setsid,
            )

            try:
                stdout, stderr = process.communicate(timeout=self.timeout)
                if process.returncode != 0:
                    if self.log:
                        self.log.warning(
                            f"JADX returned non-zero exit code {process.returncode}: "
                            f"{stderr[:500] if stderr else 'no stderr'}"
                        )
                    # JADX may still produce partial output on non-zero exit
                    return os.path.isdir(os.path.join(output_dir, "sources"))
                return True

            except subprocess.TimeoutExpired:
                if self.log:
                    self.log.error(
                        f"JADX timed out after {self.timeout}s"
                    )
                # Kill the process group
                try:
                    os.killpg(os.getpgid(process.pid), signal.SIGTERM)
                    process.wait(timeout=3)
                except (ProcessLookupError, subprocess.TimeoutExpired):
                    try:
                        os.killpg(os.getpgid(process.pid), signal.SIGKILL)
                    except ProcessLookupError:
                        pass
                return False

        except FileNotFoundError:
            if self.log:
                self.log.error(
                    f"JADX not found at '{self.jadx_path}'. "
                    "Install JADX or set JADX_PATH env var."
                )
            return False
        except Exception as e:
            if self.log:
                self.log.error(f"JADX execution error: {e}")
            return False

    def parse_java_methods(self, output_dir: str) -> Dict[str, str]:
        """Parse JADX output into per-method Java source.

        Returns dict keyed by 'package.ClassName.methodName(ParamType1, ParamType2)'.
        """
        sources_dir = os.path.join(output_dir, "sources")
        if not os.path.isdir(sources_dir):
            return {}

        methods = {}
        for root, _dirs, files in os.walk(sources_dir):
            for fname in files:
                if not fname.endswith(".java"):
                    continue
                fpath = os.path.join(root, fname)
                try:
                    with open(fpath, "r", encoding="utf-8", errors="replace") as f:
                        content = f.read()

                    # Derive the fully qualified class name from file path
                    rel_path = os.path.relpath(fpath, sources_dir)
                    class_fqn = rel_path.replace(os.sep, ".").replace("/", ".")
                    if class_fqn.endswith(".java"):
                        class_fqn = class_fqn[:-5]

                    file_methods = self._extract_methods_from_java(
                        content, class_fqn
                    )
                    methods.update(file_methods)

                except Exception:
                    continue

        return methods

    def _extract_methods_from_java(
        self, source: str, class_fqn: str
    ) -> Dict[str, str]:
        """Extract individual methods from a Java source file.

        Uses brace-depth tracking to find method boundaries.
        """
        methods = {}
        lines = source.split("\n")
        i = 0

        while i < len(lines):
            line = lines[i]
            match = self._is_method_declaration(line)
            if match:
                method_name, param_types = match
                # Track brace depth to find method end
                start_line = i
                brace_depth = 0
                found_open = False

                for j in range(i, len(lines)):
                    for ch in lines[j]:
                        if ch == "{":
                            brace_depth += 1
                            found_open = True
                        elif ch == "}":
                            brace_depth -= 1

                    if found_open and brace_depth == 0:
                        method_body = "\n".join(lines[start_line : j + 1])
                        key = f"{class_fqn}.{method_name}({param_types})"
                        methods[key] = method_body
                        i = j + 1
                        break
                else:
                    i += 1
            else:
                i += 1

        return methods

    # Regex for method declarations (not constructors, not class/interface decl)
    _METHOD_DECL_RE = re.compile(
        r"^\s*(?:(?:public|private|protected|static|final|synchronized|"
        r"native|abstract|strictfp)\s+)*"
        r"(?:[\w<>\[\]?.]+\s+)"  # return type
        r"(\w+)"  # method name
        r"\s*\(([^)]*)\)"  # parameters
        r"(?:\s*throws\s+[\w.,\s]+)?"
        r"\s*\{"
    )

    def _is_method_declaration(self, line: str) -> Optional[tuple]:
        """Check if a line is a method declaration.

        Returns (method_name, param_types_str) or None.
        """
        m = self._METHOD_DECL_RE.match(line)
        if not m:
            return None

        method_name = m.group(1)
        params_raw = m.group(2).strip()

        # Skip class-level blocks
        if method_name in ("if", "for", "while", "switch", "try", "catch"):
            return None

        # Extract just the type names from parameters
        if not params_raw:
            return (method_name, "")

        param_types = []
        for param in params_raw.split(","):
            param = param.strip()
            if not param:
                continue
            parts = param.split()
            # Last non-annotation token before the variable name is the type
            # Simple heuristic: type is second-to-last, name is last
            if len(parts) >= 2:
                param_types.append(parts[-2])
            elif len(parts) == 1:
                param_types.append(parts[0])

        return (method_name, ", ".join(param_types))