Jakub Galgonek

21 papers B 4Journal 11Unranked 6
YearRankTypeTitle / Venue / Authors
2025 J jnl
SPARQL Federated Query Debugging Tool.
Semantic Web
Marek Moos, Jakub Galgonek
2024 — conf
CHIST-ERA Triple: improving data interoperability and federation across RDF knowledge graphs and Solid Pods.
SWAT4HCLS
Jerven T. Bolleman, Elias Crum, Iulian Dragan, Jakub Galgonek, Mark Ibberson, Tarcisio Mendes de Farias, Marek Moos, Marco Pagni, Ruben Taelman, Jirí Vondrásek, Ana Claudia Sima
2024 J jnl
The IDSM mass spectrometry extension: searching mass spectra using SPARQL.
Bioinform.
Jakub Galgonek, Jirí Vondrásek
2023 J jnl
A comparison of approaches to accessing existing biological and chemical relational databases via SPARQL.
J. Cheminformatics
Jakub Galgonek, Jirí Vondrásek
2021 J jnl
Amino Acid Interactions (INTAA) web server v2.0: a single service for computation of energetics and conservation in biomolecular 3D structures.
Nucleic Acids Res.
Jirí Vymetal, David Jakubec, Jakub Galgonek, Jirí Vondrásek
2021 J jnl
IDSM ChemWebRDF: SPARQLing small-molecule datasets.
J. Cheminformatics
Jakub Galgonek, Jirí Vondrásek
2020 J jnl
Correction to: Interoperable chemical structure search service.
J. Cheminformatics
Miroslav Kratochvíl, Jirí Vondrásek, Jakub Galgonek
2019 J jnl
Interoperable chemical structure search service.
J. Cheminformatics
Miroslav Kratochvíl, Jirí Vondrásek, Jakub Galgonek
2018 J jnl
Sachem: a chemical cartridge for high-performance substructure search.
J. Cheminformatics
Miroslav Kratochvíl, Jirí Vondrásek, Jakub Galgonek
2017 J jnl
Amino Acid Interaction (INTAA) web server.
Nucleic Acids Res.
Jakub Galgonek, Jirí Vymetal, David Jakubec, Jirí Vondrásek
2016 J jnl
Advanced SPARQL querying in small molecule databases.
J. Cheminformatics
Jakub Galgonek, Tomás Hurt, Vendula Michlíková, Petr Onderka, Jan Schwarz, Jirí Vondrásek
2014 J jnl
On InChI and evaluating the quality of cross-reference links.
J. Cheminformatics
Jakub Galgonek, Jirí Vondrásek
2012 — conf
On the Parallelization of the SProt Measure and the TM-Score Algorithm.
Euro-Par Workshops
Jakub Galgonek, Martin Krulis, David Hoksza
2012 — conf
P3S: Protein Structure Similarity Search.
Euro-Par Workshops
Jakub Galgonek, Tomás Skopal, David Hoksza
2012 B conf
SimTandem: Similarity Search in Tandem Mass Spectra.
SISAP
Jirí Novák, Jakub Galgonek, David Hoksza, Tomás Skopal
2011 B conf
On metric approximations of the SProt measure.
SISAP
Jakub Galgonek, David Hoksza
2011 B conf
Protein sequences identification using NM-tree.
SISAP
Jirí Novák, Tomás Skopal, David Hoksza, Jakub Lokoc, Jakub Galgonek
2010 — conf
SMILE - A Framework for Semantic Applications.
OTM Workshops
Jakub Galgonek, Tomás Knap, Martin Krulis, Martin Necaský
2010 — conf
SProt - from local to global protein structure similarity.
BIBM Workshops
Jakub Galgonek, David Hoksza
2009 B conf
On the Effectiveness of Distances Measuring Protein Structure Similarity.
SISAP
Jakub Galgonek, David Hoksza
2009 — conf
Tequila - a query language for the Semantic Web.
DATESO
Jakub Galgonek