Jakub Beránek

25 papers A* 2A 3Misc 1Journal 14Unranked 5

Year	Rank	Type	Title / Venue / Authors
2024	A	`conf`	A System Development Kit for Big Data Applications on FPGA-based Clusters: The EVEREST Approach. DATE Christian Pilato, Subhadeep Banik, Jakub Beránek, Fabien Brocheton, Jerónimo Castrillón, Riccardo Cevasco, Radim Cmar, Serena Curzel, Fabrizio Ferrandi, Karl F. A. Friebel, Antonella Galizia, Matteo Grasso, Paulo Silva, Jan Martinovic, Gianluca Palermo, Michele Paolino, Andrea Parodi, Antonio Parodi, Fabio Pintus, Raphael Polig, David Poulet, Francesco Regazzoni, Burkhard Ringlein, Roberto Rocco, Katerina Slaninová, Tom Slooff, Stephanie Soldavini, Felix Suchert, Mattia Tibaldi, Beat Weiss, Christoph Hagleitner
2024	J	`jnl`	A System Development Kit for Big Data Applications on FPGA-based Clusters: The EVEREST Approach. CoRR Christian Pilato, Subhadeep Banik, Jakub Beránek, Fabien Brocheton, Jerónimo Castrillón, Riccardo Cevasco, Radim Cmar, Serena Curzel, Fabrizio Ferrandi, Karl F. A. Friebel, Antonella Galizia, Matteo Grasso, Paulo Silva, Jan Martinovic, Gianluca Palermo, Michele Paolino, Andrea Parodi, Antonio Parodi, Fabio Pintus, Raphael Polig, David Poulet, Francesco Regazzoni, Burkhard Ringlein, Roberto Rocco, Katerina Slaninová, Tom Slooff, Stephanie Soldavini, Felix Suchert, Mattia Tibaldi, Beat Weiss, Christoph Hagleitner
2024	J	`jnl`	HyperQueue: Efficient and ergonomic task graphs on HPC clusters. SoftwareX Jakub Beránek, Ada Böhm, Gianluca Palermo, Jan Martinovic, Branislav Jansik
2024	—	`conf`	LIGATE - LIgand Generator and portable drug discovery platform AT Exascale. CF (Companion) Gianluca Palermo, Gianmarco Accordi, Davide Gadioli, Yuedong Zhang, Emanuele Vitali, Bruno Guindani, Danilo Ardagna, Cristina Silvano, Andrea Rosario Beccari, Domenico Bonanni, Carmine Talarico, Filippo Lunghini, Akash Deep Biswas, Jan Martinovic, Martin Golasowski, Paulo Silva, Ada Böhm, Jakub Beránek, Jan Krenek, Branislav Jansik, Peter Thoman, Philip Salzmann, Thomas Fahringer, Torsten Schwede, Leila Tamara Alexander, Gerardo Tauriello, Janani Durairaj, Biagio Cosenza, Luigi Crisci, Andrew Emerson, Federico Ficarelli, Erik Lindahl, Sebastian Wingbermühle, Daniele Gregori, Silvano Coletti, Emanuele Sana, Philipp Gschwandtner
2023	—	`conf`	Tunable and Portable Extreme-Scale Drug Discovery Platform at Exascale: the LIGATE Approach. CF Gianluca Palermo, Gianmarco Accordi, Davide Gadioli, Emanuele Vitali, Cristina Silvano, Bruno Guindani, Danilo Ardagna, Andrea Rosario Beccari, Domenico Bonanni, Carmine Talarico, Filippo Lunghini, Jan Martinovic, Paulo Silva, Ada Bohm, Jakub Beránek, Jan Krenek, Branislav Jansik, Biagio Cosenza, Luigi Crisci, Peter Thoman, Philip Salzmann, Thomas Fahringer, Leila T. Alexander, Gerardo Tauriello, Torsten Schwede, Janani Durairaj, Andrew Emerson, Federico Ficarelli, Sebastian Wingbermühle, Erik Lindahl, Daniele Gregori, Emanuele Sana, Silvano Coletti, Philipp Gschwandtner
2023	J	`jnl`	Tunable and Portable Extreme-Scale Drug Discovery Platform at Exascale: the LIGATE Approach. CoRR Gianluca Palermo, Gianmarco Accordi, Davide Gadioli, Emanuele Vitali, Cristina Silvano, Bruno Guindani, Danilo Ardagna, Andrea Rosario Beccari, Domenico Bonanni, Carmine Talarico, Filippo Lunghini, Jan Martinovic, Paulo Silva, Ada Bohm, Jakub Beránek, Jan Krenek, Branislav Jansik, Luigi Crisci, Biagio Cosenza, Peter Thoman, Philip Salzmann, Thomas Fahringer, Leila T. Alexander, Gerardo Tauriello, Torsten Schwede, Janani Durairaj, Andrew Emerson, Federico Ficarelli, Sebastian Wingbermühle, Erik Lindahl, Daniele Gregori, Emanuele Sana, Silvano Coletti, Philipp Gschwandtner
2023	J	`jnl`	pyCaverDock: Python implementation of the popular tool for analysis of ligand transport with advanced caching and batch calculation support. Bioinform. Ondrej Vavra, Jakub Beránek, Jan Stourac, Martin Surkovský, Jiri Filipovic, Jirí Damborský, Jan Martinovic, David Bednar
2022	J	`jnl`	Analysis of Workflow Schedulers in Simulated Distributed Environments. CoRR Jakub Beránek, Stanislav Böhm, Vojtech Cima
2022	J	`jnl`	Analysis of workflow schedulers in simulated distributed environments. J. Supercomput. Jakub Beránek, Stanislav Böhm, Vojtech Cima
2021	A*	`conf`	A RISC-V in-network accelerator for flexible high-performance low-power packet processing. ISCA Salvatore Di Girolamo, Andreas Kurth, Alexandru Calotoiu, Thomas Benz, Timo Schneider, Jakub Beránek, Luca Benini, Torsten Hoefler
2021	J	`jnl`	GraphMineSuite: Enabling High-Performance and Programmable Graph Mining Algorithms with Set Algebra. CoRR Maciej Besta, Zur Vonarburg-Shmaria, Yannick Schaffner, Leonardo Schwarz, Grzegorz Kwasniewski, Lukas Gianinazzi, Jakub Beránek, Kacper Janda, Tobias Holenstein, Sebastian Leisinger, Peter Tatkowski, Esref Özdemir, Adrian Balla, Marcin Copik, Philipp Lindenberger, Pavel Kalvoda, Marek Konieczny, Onur Mutlu, Torsten Hoefler
2021	J	`jnl`	GraphMineSuite: Enabling High-Performance and Programmable Graph Mining Algorithms with Set Algebra. Proc. VLDB Endow. Maciej Besta, Zur Vonarburg-Shmaria, Yannick Schaffner, Leonardo Schwarz, Grzegorz Kwasniewski, Lukas Gianinazzi, Jakub Beránek, Kacper Janda, Tobias Holenstein, Sebastian Leisinger, Peter Tatkowski, Esref Özdemir, Adrian Balla, Marcin Copik, Philipp Lindenberger, Marek Konieczny, Onur Mutlu, Torsten Hoefler
2021	A*	`conf`	SISA: Set-Centric Instruction Set Architecture for Graph Mining on Processing-in-Memory Systems. MICRO Maciej Besta, Raghavendra Kanakagiri, Grzegorz Kwasniewski, Rachata Ausavarungnirun, Jakub Beránek, Konstantinos Kanellopoulos, Kacper Janda, Zur Vonarburg-Shmaria, Lukas Gianinazzi, Ioana Stefan, Juan Gómez-Luna, Jakub Golinowski, Marcin Copik, Lukas Kapp-Schwoerer, Salvatore Di Girolamo, Nils Blach, Marek Konieczny, Onur Mutlu, Torsten Hoefler
2021	J	`jnl`	SISA: Set-Centric Instruction Set Architecture for Graph Mining on Processing-in-Memory Systems. CoRR Maciej Besta, Raghavendra Kanakagiri, Grzegorz Kwasniewski, Rachata Ausavarungnirun, Jakub Beránek, Konstantinos Kanellopoulos, Kacper Janda, Zur Vonarburg-Shmaria, Lukas Gianinazzi, Ioana Stefan, Juan Gómez-Luna, Marcin Copik, Lukas Kapp-Schwoerer, Salvatore Di Girolamo, Marek Konieczny, Onur Mutlu, Torsten Hoefler
2020	J	`jnl`	PsPIN: A high-performance low-power architecture for flexible in-network compute. CoRR Salvatore Di Girolamo, Andreas Kurth, Alexandru Calotoiu, Thomas Benz, Timo Schneider, Jakub Beránek, Luca Benini, Torsten Hoefler
2020	—	`conf`	Runtime vs Scheduler: Analyzing Dask's Overheads. WORKS@SC Stanislav Böhm, Jakub Beránek
2020	J	`jnl`	Runtime vs Scheduler: Analyzing Dask's Overheads. CoRR Stanislav Böhm, Jakub Beránek
2019	Misc	`conf`	A Distributed Environment for Traffic Navigation Systems. CISIS Jan Martinovic, Martin Golasowski, Katerina Slaninová, Jakub Beránek, Martin Surkovský, Lukás Rapant, Daniela Szturcová, Radim Cmar
2019	—	`conf`	Alternative Paths Reordering Using Probabilistic Time-Dependent Routing. NBiS Martin Golasowski, Jakub Beránek, Martin Surkovský, Lukás Rapant, Daniela Szturcová, Jan Martinovic, Katerina Slaninová
2019	J	`jnl`	Haydi: Rapid Prototyping and Combinatorial Objects. CoRR Stanislav Böhm, Jakub Beránek, Martin Surkovský
2019	J	`jnl`	Network-Accelerated Non-Contiguous Memory Transfers. CoRR Salvatore Di Girolamo, Konstantin Taranov, Andreas Kurth, Michael Schaffner, Timo Schneider, Jakub Beránek, Maciej Besta, Luca Benini, Duncan Roweth, Torsten Hoefler
2019	A	`conf`	Network-accelerated non-contiguous memory transfers. SC Salvatore Di Girolamo, Konstantin Taranov, Andreas Kurth, Michael Schaffner, Timo Schneider, Jakub Beránek, Maciej Besta, Luca Benini, Duncan Roweth, Torsten Hoefler
2019	J	`jnl`	Streaming Message Interface: High-Performance Distributed Memory Programming on Reconfigurable Hardware. CoRR Tiziano De Matteis, Johannes de Fine Licht, Jakub Beránek, Torsten Hoefler
2019	A	`conf`	Streaming message interface: high-performance distributed memory programming on reconfigurable hardware. SC Tiziano De Matteis, Johannes de Fine Licht, Jakub Beránek, Torsten Hoefler
2018	—	`conf`	Haydi: Rapid Prototyping and Combinatorial Objects. FoIKS Stanislav Böhm, Jakub Beránek, Martin Surkovský