Jakob Hull Havgaard

11 papers C 1Journal 9Unranked 1
YearRankTypeTitle / Venue / Authors
2020 J jnl
Using GPU to accelerate the pairwise structural RNA alignment with base pair probabilities.
Concurr. Comput. Pract. Exp.
Daniel Sundfeld, George Teodoro, Jakob Hull Havgaard, Jan Gorodkin, Alba C. M. A. Melo
2017 C conf
CUDA-Sankoff: Using GPU to Accelerate the Pairwise Structural RNA Alignment.
PDP
Daniel Sundfeld, Jakob Hull Havgaard, Jan Gorodkin, Alba Cristina Magalhaes Alves de Melo
2017 J jnl
RNAscClust: clustering RNA sequences using structure conservation and graph based motifs.
Bioinform.
Milad Miladi, Alexander Junge, Fabrizio Costa, Stefan E. Seemann, Jakob Hull Havgaard, Jan Gorodkin, Rolf Backofen
2016 J jnl
Foldalign 2.5: multithreaded implementation for pairwise structural RNA alignment.
Bioinform.
Daniel Sundfeld, Jakob Hull Havgaard, Alba Cristina Magalhaes Alves de Melo, Jan Gorodkin
2009 J jnl
Structural profiles of human miRNA families from pairwise clustering.
Bioinform.
Bogumil Kaczkowski, Elfar Torarinsson, Kristin Reiche, Jakob Hull Havgaard, Peter F. Stadler, Jan Gorodkin
2007 J jnl
Fast Pairwise Structural RNA Alignments by Pruning of the Dynamical Programming Matrix.
PLoS Comput. Biol.
Jakob Hull Havgaard, Elfar Torarinsson, Jan Gorodkin
2007 J jnl
Multiple structural alignment and clustering of RNA sequences.
Bioinform.
Elfar Torarinsson, Jakob Hull Havgaard, Jan Gorodkin
2007 — conf
SNP mining porcine ESTs with MAVIANT, a novel tool for SNP evaluation and annotation.
ISMB/ECCB (Supplement of Bioinformatics)
Frank Panitz, Henrik Stengaard, Henrik Hornshøj, Jan Gorodkin, Jakob Hedegaard, Susanna Cirera, Bo Thomsen, Lone B. Madsen, Anette Høj, Rikke K. Vingborg, Bujie Zahn, Xuegang Wang, Xuefei Wang, Rasmus Wernersson, Claus B. Jørgensen, Karsten Scheibye-Knudsen, Troels Arvin, Steen Lumholdt, Milena Sawera, Trine Green, Bente J. Nielsen, Jakob Hull Havgaard, Søren Brunak, Merete Fredholm, Christian Bendixen
2006 J jnl
MicroRNA sequence motifs reveal asymmetry between the stem arms.
Comput. Biol. Chem.
Jan Gorodkin, Jakob Hull Havgaard, Milena Ensterö, Milena Sawera, Peter Jensen, M. Öhman, Merete Fredholm
2005 J jnl
Pairwise local structural alignment of RNA sequences with sequence similarity less than 40%.
Bioinform.
Jakob Hull Havgaard, Rune B. Lyngsø, Gary D. Stormo, Jan Gorodkin
2005 J jnl
The FOLDALIGN web server for pairwise structural RNA alignment and mutual motif search.
Nucleic Acids Res.
Jakob Hull Havgaard, Rune B. Lyngsø, Jan Gorodkin