Jake Yue Chen

38 papers Misc 8Journal 18Unranked 7
YearRankTypeTitle / Venue / Authors
2025 J jnl
Decoding Patterns of Data Generation Teams for Clinical and Scientific Success: Insights from the Bridge2AI Talent Knowledge Graph.
CoRR
Jiawei Xu, Qingnan Xie, Meijun Liu, Zhandos Sembay, Swathi Thaker, Pamela Payne-Foster, Jake Yue Chen, Ying Ding
2025 J jnl
Demo: Interactive Visualization of Semantic Relationships in a Biomedical Project's Talent Knowledge Graph.
CoRR
Jiawei Xu, Zhandos Sembay, Swathi Thaker, Pamela Payne-Foster, Jake Yue Chen, Ying Ding
2023 — conf
Designing Helicobacter pylori as an Anticancer Bacterial Vector.
BCB
Selina Zhang, Jake Yue Chen
2022 J jnl
DEMA: a distance-bounded energy-field minimization algorithm to model and layout biomolecular networks with quantitative features.
Bioinform.
Zhenyu Weng, Zongliang Yue, Yuesheng Zhu, Jake Yue Chen
2015 J jnl
PAGER: constructing PAGs and new PAG-PAG relationships for network biology.
Bioinform.
Zongliang Yue, Madhura M. Kshirsagar, Thanh Nguyen, Chayaporn Suphavilai, Michael T. Neylon, Liugen Zhu, Timothy Ratliff, Jake Yue Chen
2015 — conf
Predictive and preventive models for diabetes prevention using clinical information in electronic health record.
BIBM
Ni Cao, Sisi Zeng, Feixia Shen, Chuandi Pan, Chengshui Chen, Thanh Nguyen, Jake Yue Chen
2015 — ed.
Proceedings of the Eighth International C* Conference on Computer Science & Software Engineering, Yokohama, Japan, July 13-15, 2015
C3S2E
Jake Yue Chen, Mohammed J. Zaki, Tamer Kahveci, Saeed Salem, Mehmet Koyutürk
2014 — ch.
Computational Biomarker Discovery.
Approaches in Integrative Bioinformatics
Fan Zhang, Xiaogang Wu, Jake Yue Chen
2014 J jnl
SLDR: a computational technique to identify novel genetic regulatory relationships.
BMC Bioinform.
Zongliang Yue, Ping Wan, Hui Huang, Zhan Xie, Jake Yue Chen
2013 — ed.
Proceedings of the 12th International Workshop on Data Mining in Bioinformatics, BIOKDD 2013, Chicago, IL, USA, August 11, 2013
BIOKDD
Gaurav Pandey, Huzefa Rangwala, George Karypis, Jake Yue Chen, Mohammed Javeed Zaki
2012 J jnl
Biological knowledge discovery and data mining.
Sci. Program.
Mohammad Al Hasan, Jun Huan, Jake Yue Chen, Mohammed J. Zaki
2012 — ed.
Proceedings of the 11th International Workshop on Data Mining in Bioinformatics, BIOKDD 2012, Beijing, China, August 12, 2012
BIOKDD
Tamer Kahveci, Saeed Salem, Mehmet Koyutürk, Jake Yue Chen, Mohammed J. Zaki
2011 — conf
A Network Biology Approach to Predicting Drug Cardiotoxicity.
BIBM
Liang-Chin Huang, Jake Yue Chen
2011 — ed.
Proceedings of the Tenth International Workshop on Data Mining in Bioinformatics, BIOKDD '11, San Diego, California, USA, August 21, 2011
BIOKDD
Mohammed J. Zaki, Jake Yue Chen, Mohammad Al Hasan, Jun Huan
2010 J jnl
Data Mining in Bioinformatics: Selected Papers from BIOKDD.
IEEE ACM Trans. Comput. Biol. Bioinform.
Stefano Lonardi, Jake Yue Chen
2010 J jnl
Discovering breast cancer drug candidates from biomedical literature.
Int. J. Data Min. Bioinform.
Jiao Li, Xiaoyan Zhu, Jake Yue Chen
2010 J jnl
GeneTerrain: Visual exploration of differential gene expression profiles organized in native biomolecular interaction networks.
Inf. Vis.
Qian You, Shiaofen Fang, Jake Yue Chen
2009 J jnl
Building Disease-Specific Drug-Protein Connectivity Maps from Molecular Interaction Networks and PubMed Abstracts.
PLoS Comput. Biol.
Jiao Li, Xiaoyan Zhu, Jake Yue Chen
2009 Misc conf
Construct anticancer drug-drug correlation network.
SAC
Jiao Li, Pamela Crowell, Jake Yue Chen
2009 J jnl
Semantic web for integrated network analysis in biomedicine.
Briefings Bioinform.
Huajun Chen, Li Ding, Zhaohui Wu, Tong Yu, Lavanya Dhanapalan, Jake Yue Chen
2009 — conf
Visualizing a Correlative Multi-level Graph of Biology Entity Interactions.
NBiS
Qian You, Shiaofen Fang, Snehasis Mukhopadhyay, Harsha Gopal Goud Vaka, Jake Yue Chen
2008 Misc conf
Mining disease-specific molecular association profiles from biomedical literature: a case study.
SAC
Jiao Li, Xiaoyan Zhu, Jake Yue Chen
2008 J jnl
ProteoLens: a visual analytic tool for multi-scale database-driven biological network data mining.
BMC Bioinform.
Tianxiao Huan, Andrey Y. Sivachenko, Scott H. Harrison, Jake Yue Chen
2008 Misc conf
Towards an integrative human pathway database for systems biology applications.
SAC
Harini N. Kasamsetty, Xiaogang Wu, Jake Yue Chen
2007 J jnl
A Systems Biology Approach to the Study of cisplatin Drug Resistance in Ovarian cancers.
J. Bioinform. Comput. Biol.
Jake Yue Chen, Zhong Yan, Changyu Shen, Dawn P. G. Fitzpatrick, Mu Wang
2007 J jnl
A case study of integrating protein interaction data using semantic web technology.
Int. J. Bioinform. Res. Appl.
Lavanya Dhanapalan, Jake Yue Chen
2007 J jnl
DisProt: the Database of Disordered Proteins.
Nucleic Acids Res.
Megan Sickmeier, Justin A. Hamilton, Tanguy LeGall, Vladimir Vacic, Marc S. Cortese, Ágnes Tantos, Beáta Szabó, Peter Tompa, Jake Yue Chen, Vladimir N. Uversky, Zoran Obradovic, A. Keith Dunker
2006 Misc conf
An integrated computational proteomics method to extract protein targets for Fanconi Anemia studies.
SAC
Jake Yue Chen, Sarah L. Pinkerton, Changyu Shen, Mu Wang
2006 Misc conf
Mining Alzheimer Disease Relevant Proteins from Integrated Protein Interactome Data.
Pacific Symposium on Biocomputing
Jake Yue Chen, Changyu Shen, Andrey Y. Sivachenko
2005 Misc conf
A complex biological database querying method.
SAC
Jake Yue Chen, John V. Carlis, Ning Gao
2005 — conf
Discover True Association Rates in Multi-protein Complex Proteomics Data Sets.
CSB
Changyu Shen, Lang Li, Jake Yue Chen
2005 J jnl
Oracle Database 10
Nucleic Acids Res.
Susie Stephens, Jake Yue Chen, Marcel G. Davidson, Shiby Thomas, Barry M. Trute
2004 Misc conf
Editorial message: special track on bioinformatics.
SAC
Warren T. Jones, Mathew J. Palakal, Jake Yue Chen
2004 — conf
High-throughput Protein Interactome Data: Minable or Not?
BIOKDD
Jake Yue Chen, Andrey Y. Sivachenko, Lang Li
2004 J jnl
ODM BLAST: Sequence Homology Search in the RDBMS.
IEEE Data Eng. Bull.
Susie Stephens, Jake Yue Chen, Shiby Thomas
2003 J jnl
Genomic data modeling.
Inf. Syst.
Jake Yue Chen, John V. Carlis
2003 — conf
Initial Large-scale Exploration of Protein-protein Interactions in Human Brain.
CSB
Jake Yue Chen, Andrey Y. Sivachenko, Russell Bell, Cornelia Kurschner, Irene Ota, Sudhir Sahasrabudhe
2003 Misc conf
Similar_Join: Extending DBMS with a Bio-specific Operator.
SAC
Jake Yue Chen, John V. Carlis