Jahmunah Vicnesh

12 papers Journal 12
YearRankTypeTitle / Venue / Authors
2025 J jnl
IEEE Access
Jahmunah Vicnesh, Massimo Salvi, Yuki Hagiwara, Hah Yan Yee, Hasan Saeed Mir, Prabal Datta Barua, Subrata Chakraborty, Filippo Molinari, U. Rajendra Acharya
2024 J jnl
Expert Syst. J. Knowl. Eng.
Joel Koh En Wei, Venkatesan Rajinikanth, Jahmunah Vicnesh, The-Hanh Pham, Shu Lih Oh, Chai Hong Yeong, Meena Sankaranarayanan, Aditya P. Kamath, Giliyar Muralidhar Bairy, Prabal Datta Barua, Kang Hao Cheong
2024 J jnl
IEEE Access
Anjan Gudigar, U. Raghavendra, M. Maithri, Jyothi Samanth, Mahesh Anil Inamdar, Vidhya V., Jahmunah Vicnesh, Mukund A. Prabhu, Ru-San Tan, Chai Hong Yeong, Filippo Molinari, U. Rajendra Acharya
2023 J jnl
Comput. Biol. Medicine
Silvia Seoni, Jahmunah Vicnesh, Massimo Salvi, Prabal Datta Barua, Filippo Molinari, U. Rajendra Acharya
2022 J jnl
Comput. Biol. Medicine
Joel E. W. Koh, Ooi Chui Ping, Nikki S. J. Lim-Ashworth, Jahmunah Vicnesh, Hui Tian Tor, Shu Lih Oh, Ru-San Tan, U. Rajendra Acharya, Daniel Shuen Sheng Fung
2021 J jnl
Int. J. Imaging Syst. Technol.
Jahmunah Vicnesh, K. Vidya Sudarshan, Shu Lih Oh, Raj Gururajan, Rashmi Gururajan, Xujuan Zhou, Xiaohui Tao, Oliver Faust, Edward J. Ciaccio, Kwan Hoong Ng, U. Rajendra Acharya
2020 J jnl
Pattern Recognit. Lett.
Joel Koh En Wei, Jahmunah Vicnesh, The-Hanh Pham, Shu Lih Oh, Edward J. Ciaccio, U. Rajendra Acharya, Chai Hong Yeong, Mohd Kamil Bin Mohd Fabell, Kartini Rahmat, Anushya Vijayananthan, Norlisah Ramli
2020 J jnl
Int. J. Imaging Syst. Technol.
U. Rajendra Acharya, Kristen M. Meiburger, Joel E. W. Koh, Edward J. Ciaccio, Jahmunah Vicnesh, Sock Keow Tan, Jeannie Hsiu Ding Wong, Raja Rizal Azman Raja Aman, Kwan Hoong Ng
2020 J jnl
Comput. Methods Programs Biomed.
Shu Lih Oh, Jahmunah Vicnesh, Ooi Chui Ping, Ru-San Tan, Edward J. Ciaccio, Toshitaka Yamakawa, Masayuki Tanabe, Makiko Kobayashi, U. Rajendra Acharya
2020 J jnl
Artif. Intell. Medicine
Shu Lih Oh, Jahmunah Vicnesh, Ru-San Tan, Edward J. Ciaccio, Toshitaka Yamakawa, Masayuki Tanabe, Makiko Kobayashi, Oliver Faust, U. Rajendra Acharya
2019 J jnl
J. Medical Syst.
Jahmunah Vicnesh, Joel Koh En Wei, Edward J. Ciaccio, Shu Lih Oh, Govind Bhagat, Suzanne K. Lewis, Peter H. R. Green, U. Rajendra Acharya
2019 J jnl
Artif. Intell. Medicine
U. Rajendra Acharya, Kristen M. Meiburger, Joel E. W. Koh, Jahmunah Vicnesh, Edward J. Ciaccio, Shu Lih Oh, Sock Keow Tan, Raja Rizal Azman Raja Aman, Filippo Molinari, Kwan Hoong Ng
redb/s3_utils.py
← Index redb/s3_utils.py python
"""
S3 and file utility functions for REDB.

Contains MinIO/S3 client creation, S3 key generation,
file download, and archive extraction helpers.
"""
import os
import tempfile
from typing import Optional, List

from minio import Minio
from minio.error import S3Error


def get_minio_client():
    """Create and return a Minio client using credentials from .env file"""
    return Minio(
        endpoint=os.getenv("S3_ENDPOINT"),
        access_key=os.getenv("S3_ACCESS_KEY"),
        secret_key=os.getenv("S3_SECRET_KEY"),
        secure=os.getenv("S3_SECURE", "false").lower() == "true"
    )


def generate_s3_key_from_hash(sample_hash: str) -> str:
    """
    Generate S3 key from hash using sharding structure.
    Example: 09f7d02a3c2382199458c98a62b045145ee54ab6aba86166aecf3d10c3c1444c
    becomes: 09/f7/09f7d02a3c2382199458c98a62b045145ee54ab6aba86166aecf3d10c3c1444c.zip
    """
    if len(sample_hash) < 4:
        raise ValueError(f"Hash too short for sharding: {sample_hash}")

    # Create sharded path: first 2 chars / next 2 chars / full_hash.zip
    return f"{sample_hash[:2]}/{sample_hash[2:4]}/{sample_hash}.zip"


def download_s3_object(s3_bucket: str, s3_key: str, temp_dir: str, logger=None) -> Optional[str]:
    """
    Download an object from S3 to a local temporary directory and return the local path.
    If the .zip file is not found, automatically tries .7z as a fallback for legacy uploads.
    """
    try:
        minio_client = get_minio_client()
        local_path = os.path.join(temp_dir, os.path.basename(s3_key))

        # Download the file
        minio_client.fget_object(s3_bucket, s3_key, local_path)

        return local_path
    except S3Error as e:
        # If .zip not found and error is NoSuchKey, try .7z fallback
        if e.code == 'NoSuchKey' and s3_key.endswith('.zip'):
            s3_key_7z = s3_key[:-4] + '.7z'  # Replace .zip with .7z
            if logger:
                logger.info(f".zip not found, trying .7z fallback: {s3_key_7z}")
            try:
                local_path_7z = os.path.join(temp_dir, os.path.basename(s3_key_7z))
                minio_client.fget_object(s3_bucket, s3_key_7z, local_path_7z)
                if logger:
                    logger.info(f"Successfully downloaded .7z fallback: {s3_key_7z}")
                return local_path_7z
            except S3Error as e2:
                if logger:
                    logger.error(f"Failed to download S3 object {s3_key} (tried both .zip and .7z): {e2}")
                else:
                    print(f"[ERROR] Failed to download S3 object {s3_key} (tried both .zip and .7z): {e2}")
                return None
        else:
            if logger:
                logger.error(f"Failed to download S3 object {s3_key}: {e}")
            else:
                print(f"[ERROR] Failed to download S3 object {s3_key}: {e}")
            return None


def extract_fat_slices(macho, output_dir: str, logger) -> List[tuple]:
    """
    Extract slices from FAT Mach-O binary using machofile's dump_slices() API.

    Args:
        macho: Parsed machofile.UniversalMachO object
        output_dir: Directory to write slice files
        logger: Logger instance

    Returns:
        List of (arch_name, slice_path, slice_sha256, slice_md5, slice_sha1) tuples
    """
    result = []
    try:
        # Use machofile's dump_slices API (v2026.2.5+)
        slices = macho.dump_slices(output_dir=output_dir)
        logger.debug(f"Extracted {len(slices)} slices from FAT binary")

        for arch_name, slice_path in slices:
            # Get hash info for this slice from machofile
            general_info = macho.get_general_info(arch=arch_name)
            slice_sha256 = general_info.get('SHA256')
            slice_md5 = general_info.get('MD5')
            slice_sha1 = general_info.get('SHA1')
            result.append((arch_name, slice_path, slice_sha256, slice_md5, slice_sha1))
            logger.debug(f"Slice {arch_name}: {slice_sha256}")

    except Exception as e:
        logger.error(f"Error extracting FAT slices: {e}")

    return result