Jaewoon Jung - RankMe

12 papers C 1Journal 11

Year	Rank	Type	Title / Venue / Authors
2025	J	`jnl`	ColBuilder: flexible structure generation of crosslinked collagen fibrils. Bioinform. Debora Monego, Matthias Brosz, Johanna Buck, Vsevolod Viliuga, Paulius Greicius, Jaewoon Jung, Torsten Stuehn, Matthias Schmies, Yuji Sugita, Frauke Gräter
2025	C	`conf`	Scaling molecular dynamics for large-scale simulation of biological systems on AMD CPU/GPU supercomputers: Lessons from LUMI: Optimizing GENESIS for maximizing the computational efficiency of CPU and GPU kernels on the LUMI supercomputer. HPC Asia Diego Ugarte La Torre, Jaewoon Jung, Yuji Sugita
2023	J	`jnl`	Acceleration of generalized replica exchange with solute tempering simulations of large biological systems on massively parallel supercomputer. J. Comput. Chem. Jaewoon Jung, Chigusa Kobayashi, Yuji Sugita
2022	J	`jnl`	Implementation of residue-level coarse-grained models in GENESIS for large-scale molecular dynamics simulations. PLoS Comput. Biol. Cheng Tan, Jaewoon Jung, Chigusa Kobayashi, Diego Ugarte La Torre, Shoji Takada, Yuji Sugita
2021	J	`jnl`	New parallel computing algorithm of molecular dynamics for extremely huge scale biological systems. J. Comput. Chem. Jaewoon Jung, Chigusa Kobayashi, Kento Kasahara, Cheng Tan, Akiyoshi Kuroda, Kazuo Minami, Shigeru Ishiduki, Tatsuo Nishiki, Hikaru Inoue, Yutaka Ishikawa, Michael Feig, Yuji Sugita
2019	J	`jnl`	Scaling molecular dynamics beyond 100, 000 processor cores for large-scale biophysical simulations. J. Comput. Chem. Jaewoon Jung, Wataru Nishima, Marcus Daniels, Gavin Bascom, Chigusa Kobayashi, Adetokunbo Adedoyin, Michael E. Wall, Anna Lappala, Dominic Phillips, William Fischer, Chang-Shung Tung, Tamar Schlick, Yuji Sugita, Karissa Y. Sanbonmatsu
2017	J	`jnl`	GENESIS 1.1: A hybrid-parallel molecular dynamics simulator with enhanced sampling algorithms on multiple computational platforms. J. Comput. Chem. Chigusa Kobayashi, Jaewoon Jung, Yasuhiro Matsunaga, Takaharu Mori, Tadashi Ando, Koichi Tamura, Motoshi Kamiya, Yuji Sugita
2017	J	`jnl`	Multiple program/multiple data molecular dynamics method with multiple time step integrator for large biological systems. J. Comput. Chem. Jaewoon Jung, Yuji Sugita
2016	J	`jnl`	Parallel implementation of 3D FFT with volumetric decomposition schemes for efficient molecular dynamics simulations. Comput. Phys. Commun. Jaewoon Jung, Chigusa Kobayashi, Toshiyuki Imamura, Yuji Sugita
2014	J	`jnl`	Midpoint cell method for hybrid (MPI+OpenMP) parallelization of molecular dynamics simulations. J. Comput. Chem. Jaewoon Jung, Takaharu Mori, Yuji Sugita
2013	J	`jnl`	Efficient lookup table using a linear function of inverse distance squared. J. Comput. Chem. Jaewoon Jung, Takaharu Mori, Yuji Sugita
2011	J	`jnl`	Geometrically associative yet electronically dissociative character in the transition state of enzymatic reversible phosphorylation. J. Comput. Chem. Suyong Re, Takashi Imai, Jaewoon Jung, Seiichiro Ten-no, Yuji Sugita