Jae-Yoon Jung

35 papers A 2B 3C 1Misc 3Journal 20Unranked 4
YearRankTypeTitle / Venue / Authors
2022 J jnl
CoRR
Peter Washington, Cezmi Mutlu, Aaron Kline, Cathy Hou, Kaitlyn Dunlap, Jack Kent, Arman Husic, Nate Tyler Stockham, Brianna Sierra Chrisman, Kelley M. Paskov, Jae-Yoon Jung, Dennis P. Wall
2021 J jnl
BioData Min.
Maya Varma, Kelley M. Paskov, Brianna Sierra Chrisman, Min Woo Sun, Jae-Yoon Jung, Nate Tyler Stockham, Peter Washington, Dennis P. Wall
2021 J jnl
BioData Min.
Kelley M. Paskov, Jae-Yoon Jung, Brianna Sierra Chrisman, Nate Tyler Stockham, Peter Washington, Maya Varma, Min Woo Sun, Dennis P. Wall
2021 J jnl
BMC Bioinform.
Brianna Sierra Chrisman, Kelley M. Paskov, Nate Tyler Stockham, Jae-Yoon Jung, Maya Varma, Peter Washington, Christine A. Tataru, Shoko Iwai, Todd Z. DeSantis, Maude M. David, Dennis P. Wall
2021 J jnl
BioData Min.
Brianna Sierra Chrisman, Kelley M. Paskov, Nate Tyler Stockham, Kevin Tabatabaei, Jae-Yoon Jung, Peter Washington, Maya Varma, Min Woo Sun, Sepideh Maleki, Dennis P. Wall
2021 Misc conf
PSB
Peter Washington, Émilie Leblanc, Kaitlyn Dunlap, Yordan Penev, Maya Varma, Jae-Yoon Jung, Brianna Sierra Chrisman, Min Woo Sun, Nate Tyler Stockham, Kelley Marie Paskov, Haik Kalantarian, Catalin Voss, Nick Haber, Dennis P. Wall
2021 J jnl
Cogn. Comput.
Peter Washington, Haik Kalantarian, Jack Kent, Arman Husic, Aaron Kline, Émilie Leblanc, Cathy Hou, Cezmi Mutlu, Kaitlyn Dunlap, Yordan Penev, Nate Tyler Stockham, Brianna Sierra Chrisman, Kelley Marie Paskov, Jae-Yoon Jung, Catalin Voss, Nick Haber, Dennis P. Wall
2020 J jnl
BMC Bioinform.
Min Woo Sun, Stefano Moretti, Kelley M. Paskov, Nate Tyler Stockham, Maya Varma, Brianna Sierra Chrisman, Peter Yigitcan Washington, Jae-Yoon Jung, Dennis P. Wall
2020 J jnl
CoRR
Peter Washington, Haik Kalantarian, Jack Kent, Arman Husic, Aaron Kline, Émilie Leblanc, Cathy Hou, Cezmi Mutlu, Kaitlyn Dunlap, Yordan Penev, Maya Varma, Nate Tyler Stockham, Brianna Sierra Chrisman, Kelley M. Paskov, Min Woo Sun, Jae-Yoon Jung, Catalin Voss, Nick Haber, Dennis P. Wall
2019 J jnl
CoRR
Heesun Choi, Junmo An, Jin-Gyun Kim, Jae-Yoon Jung, Juhwan Choi, Grzegorz Orzechowski, Aki Mikkola, Jin-Hwan Choi
2019 Misc conf
PSB
Maya Varma, Kelley Marie Paskov, Jae-Yoon Jung, Brianna Sierra Chrisman, Nate Tyler Stockham, Peter Yigitcan Washington, Dennis Paul Wall
2018 conf
BIBM
Brianna Sierra Chrisman, Maya Varma, Peter Washington, Kelley M. Paskov, Nate Tyler Stockham, Jae-Yoon Jung, Dennis P. Wall
2018 Misc conf
PSB
Anika Gupta, Min Woo Sun, Kelley M. Paskov, Nate Tyler Stockham, Jae-Yoon Jung, Dennis P. Wall
2015 J jnl
BMC Bioinform.
Yassine Souilmi, Jae-Yoon Jung, Alex Lancaster, Erik Gafni, Saaid Amzazi, Hassan Ghazal, Dennis P. Wall, Peter J. Tonellato
2014 J jnl
J. Am. Medical Informatics Assoc.
Jae-Yoon Jung, Todd F. DeLuca, Tristan H. Nelson, Dennis P. Wall
2014 ed.
AP-BPM
Chun Ouyang, Jae-Yoon Jung
2014 J jnl
Bioinform.
Erik Gafni, Lovelace J. Luquette, Alex Lancaster, Jared B. Hawkins, Jae-Yoon Jung, Yassine Souilmi, Dennis P. Wall, Peter J. Tonellato
2012 J jnl
Bioinform.
Todd F. DeLuca, Jike Cui, Jae-Yoon Jung, Kristian Che St. Gabriel, Dennis P. Wall
2011 J jnl
Inf. Process. Lett.
Jae-Yoon Jung, Chang-Ho Chin, Jorge Cardoso
2011 J jnl
Bioinform.
Jike Cui, Todd F. DeLuca, Jae-Yoon Jung, Dennis P. Wall
2011 J jnl
BMC Bioinform.
Jike Cui, Todd F. DeLuca, Jae-Yoon Jung, Dennis P. Wall
2009 J jnl
Comput. Ind. Eng.
Jaehyun Kong, Jae-Yoon Jung, Jinwoo Park
2009 A conf
GECCO
Jae-Yoon Jung, James A. Reggia
2009 J jnl
BMC Bioinform.
Phil Hyoun Lee, Jae-Yoon Jung, Hagit Shatkay
2009 conf
ITNG
Jae-Yoon Jung
2008 B conf
IJCNN
Jae-Yoon Jung, Janice I. Glasgow, Stephen H. Scott
2008 C conf
BIBE
Jae-Yoon Jung, Janice I. Glasgow, Stephen H. Scott
2008 A conf
GECCO
Jae-Yoon Jung, James A. Reggia
2008 B conf
IJCNN
Jae-Yoon Jung, Janice I. Glasgow, Stephen H. Scott
2007
Jae-Yoon Jung
2007 conf
MUE
Jae-Yoon Jung, Yoo Suk Hong, Tae-Wan Kim, Jinwoo Park
2006 B conf
IJCNN
Jae-Yoon Jung, Phil Hyoun Lee
2006 J jnl
IEEE Trans. Evol. Comput.
Jae-Yoon Jung, James A. Reggia
2004 conf
GECCO (2)
Jae-Yoon Jung, James A. Reggia
2004 J jnl
Int. J. Fuzzy Log. Intell. Syst.
Seongwon Cho, Jaemin Kim, Jae-Yoon Jung, Cheol-Su Lim
redb/extractors/macho_extractors/macho_features.py
← Index redb/extractors/macho_extractors/macho_features.py python
import inspect
import json
from datetime import datetime, timezone
from typing import Any

from redb.extractors.enum import Tag
from redb.extractors.macho_extractor import MachOExtractor
from redb.models.dataclasses import MachO


class MachOFeaturesExtractor(MachOExtractor):

    def __init__(
        self,
        filepath,
        log,
        exporters=None,
        index_prefix=None,
        elastic_index=None,
        known_benign=False,
        known_malicious=False,
        macho=None,
    ):
        super().__init__(
            filepath,
            log,
            exporters,
            index_prefix,
            elastic_index,
            known_benign,
            known_malicious,
            macho,
        )
        self.elastic_index = self.index_prefix + "-macho_features"
        self.log.debug(inspect.currentframe().f_code.co_name)

    def tag(self):
        return Tag.MACHO_FEATURES.value

    def _extract_macho_features_for_arch(self, arch_name):
        """Extract basic MachO features for a specific architecture."""
        self.log.debug(inspect.currentframe().f_code.co_name)

        if not self.macho:
            return None

        try:
            # Get general info using new API
            general_info = self.macho.get_general_info()
            if not general_info:
                return None

            # Get header info for this specific architecture
            header_raw = self.macho.get_macho_header(arch=arch_name)
            header_formatted = self.macho.get_macho_header(arch=arch_name, formatted=True)

            if not header_raw or not header_formatted:
                return None

            # Get entry point using new API
            entry_point = None
            try:
                entry_point_info = self.macho.get_entry_point(arch=arch_name)
                if entry_point_info:
                    if isinstance(entry_point_info, dict):
                        entry_point = entry_point_info.get('entryoff') or entry_point_info.get('entry_address')
                    else:
                        entry_point = entry_point_info
            except Exception as e:
                self.log.debug(f"No entry point found: {e}")

            # Get UUID using new API
            uuid = None
            try:
                uuid_info = self.macho.get_uuid(arch=arch_name)
                if uuid_info:
                    uuid = str(uuid_info)
            except Exception as e:
                self.log.debug(f"No UUID found: {e}")

            # Get version info using new API with formatting
            version_info = None
            version_info_str = None
            try:
                version_info = self.macho.get_version_info(arch=arch_name)
                version_info_str = self.macho.get_version_info(arch=arch_name, formatted=True)
            except Exception as e:
                self.log.debug(f"No version info found: {e}")

            # Get segments using new API
            segments = self.macho.get_segments(arch=arch_name)
            number_of_segments = len(segments) if segments else 0

            # Get dylib info using new API
            dylib_names = self.macho.get_dylib_names(arch=arch_name)
            number_of_dylibs = len(dylib_names) if dylib_names else 0

            # Count imports using new API
            imported_functions = self.macho.get_imported_functions(arch=arch_name)
            number_of_imports = sum(len(funcs) for funcs in imported_functions.values()) if imported_functions else 0

            # Count exports using new API
            exported_symbols = self.macho.get_exported_symbols(arch=arch_name)
            number_of_exports = sum(len(symbols) for symbols in exported_symbols.values()) if exported_symbols else 0

            # Get unique load command types using new API
            load_commands_set = self.macho.get_load_commands_set(arch=arch_name, formatted=True)
            if isinstance(load_commands_set, set):
                load_commands_set = sorted(list(load_commands_set))

            # Get architectures for listing purposes
            architectures = self.macho.get_architectures()

            # Determine binary properties
            is_64bit = header_raw.get('magic') in [0xFEEDFACF, 0xCFFAEDFE]  # MH_MAGIC_64, MH_CIGAM_64
            is_signed = self._is_signed()
            
            # Create MachO dataclass
            macho_features = MachO(
                # Raw values from new API
                magic=header_raw.get('magic', 0),
                cputype=header_raw.get('cputype', 0),
                cpusubtype=header_raw.get('cpusubtype', 0),
                filetype=header_raw.get('filetype', 0),
                ncmds=header_raw.get('ncmds', 0),
                sizeofcmds=header_raw.get('sizeofcmds', 0),
                flags=header_raw.get('flags', 0),
                architecture=header_raw.get('cputype', 0),  # Use cputype as architecture
                architectures=[arch_info.get('cputype', 0) for arch_info in [self.macho.get_macho_header(arch=arch) for arch in architectures] if arch_info],
                # Human-readable values from formatted API
                magic_str=header_formatted.get('magic', ''),
                cputype_str=header_formatted.get('cputype', ''),
                cpusubtype_str=header_formatted.get('cpusubtype', ''),
                filetype_str=header_formatted.get('filetype', ''),
                flags_str=header_formatted.get('flags', '').split(', ') if header_formatted.get('flags') else [],
                architecture_str=header_formatted.get('cputype', ''),
                architectures_str=[arch_info.get('cputype', '') for arch_info in [self.macho.get_macho_header(arch=arch, formatted=True) for arch in architectures] if arch_info],
                # Additional properties
                is_64bit=is_64bit,
                is_signed=is_signed,
                number_of_load_commands=header_raw.get('ncmds', 0),
                load_commands_set=load_commands_set,
                number_of_segments=number_of_segments,
                number_of_dylibs=number_of_dylibs,
                number_of_imports=number_of_imports,
                number_of_exports=number_of_exports,
                entry_point=entry_point,
                uuid=uuid,
                version_info=version_info,
                version_info_str=version_info_str
            )
            
            return macho_features
            
        except Exception as e:
            self.log.error(f"Error extracting MachO features: {e}")
            return None

    def extract(self):
        self.log.debug(inspect.currentframe().f_code.co_name)
        try:
            if not self.macho:
                return None
            architectures = self.macho.get_architectures()
            if not architectures:
                return None

            # For FAT binaries, return features for all architectures
            # For single arch, return just the single result
            if len(architectures) > 1:
                # FAT binary - return list of features for each architecture
                results = []
                for arch_name in architectures:
                    features = self._extract_macho_features_for_arch(arch_name)
                    if features:
                        # Add architecture identifier to the result
                        if hasattr(features, '__dict__'):
                            # If it's a dataclass, we can access its dict
                            features.arch_identifier = arch_name
                        results.append(features)
                return results
            else:
                # Single architecture - return single result
                return self._extract_macho_features_for_arch(architectures[0])
        except Exception as e:
            self.log.error(f"Error extracting MachO features: {e}")
            return None

    def prepare_export_data(self, exporter_type: str) -> Any:
        if exporter_type == "ElasticsearchExporter":
            return self.extract()
        elif exporter_type == "ClickHouseExporter":
            if not self.macho:
                return None

            # Get architectures (macho is already parsed in __init__)
            try:
                architectures = self.macho.get_architectures()
            except Exception as e:
                self.log.error(f"Could not get architectures: {e}")
                return None

            data = []
            current_time = datetime.now(timezone.utc)

            # Loop through each architecture (1 for single, multiple for FAT)
            for arch_name in architectures:
                # Extract features for this specific architecture
                macho_features = self._extract_macho_features_for_arch(arch_name)
                if not macho_features:
                    continue

                # Get architecture-specific sha256
                try:
                    arch_general_info = self.macho.get_general_info(arch=arch_name)
                    arch_sha256 = arch_general_info.get('SHA256', self.sha256)
                except Exception as e:
                    self.log.warning(f"Could not get arch-specific hash for {arch_name}: {e}")
                    arch_sha256 = self.sha256

                # Architecture field (kept in features table for ORDER BY)
                architecture = macho_features.cputype    # Raw CPU type value

                data.append([
                    arch_sha256,                          # sha256 (architecture-specific)
                    architecture,                         # architecture (raw CPU type)
                    # Raw values
                    macho_features.magic,                 # magic
                    macho_features.cputype,               # cputype
                    macho_features.cpusubtype,            # cpusubtype
                    macho_features.filetype,              # filetype
                    macho_features.ncmds,                 # ncmds
                    macho_features.sizeofcmds,            # sizeofcmds
                    macho_features.flags,                 # flags
                    # Human-readable values
                    macho_features.magic_str,             # magic_str
                    macho_features.cputype_str,           # cputype_str
                    macho_features.cpusubtype_str,        # cpusubtype_str
                    macho_features.filetype_str,          # filetype_str
                    macho_features.flags_str,             # flags_str
                    # Other fields
                    macho_features.is_64bit,              # is_64bit
                    macho_features.is_signed,             # is_signed
                    macho_features.entry_point if macho_features.entry_point else None,           # entry_point
                    macho_features.uuid if macho_features.uuid else None,  # uuid
                    json.dumps(macho_features.version_info) if macho_features.version_info else "{}",  # version_info
                    json.dumps(macho_features.version_info_str) if macho_features.version_info_str else "{}",  # version_info_str
                    macho_features.load_commands_set,     # load_commands_set
                    macho_features.number_of_segments,    # number_of_segments
                    macho_features.number_of_dylibs,      # number_of_dylibs
                    macho_features.number_of_imports,     # number_of_imports
                    macho_features.number_of_exports,     # number_of_exports
                    current_time,                         # analysis_date
                ])

            column_names = [
                'sha256', 'architecture',
                # Raw values
                'magic', 'cputype', 'cpusubtype', 'filetype', 'ncmds', 'sizeofcmds', 'flags',
                # Human-readable values
                'magic_str', 'cputype_str', 'cpusubtype_str', 'filetype_str', 'flags_str',
                # Other fields
                'is_64bit', 'is_signed',
                'entry_point', 'uuid', 'version_info', 'version_info_str', 'load_commands_set',
                'number_of_segments', 'number_of_dylibs', 'number_of_imports', 'number_of_exports',
                'analysis_date'
            ]

            if not data:
                return None

            column_type_names = [
                'FixedString(64)', 'Nullable(UInt32)',
                # Raw values
                'UInt32', 'UInt32', 'UInt32', 'UInt32', 'UInt32', 'UInt32', 'UInt32',
                # Human-readable values
                'LowCardinality(String)', 'LowCardinality(String)', 'LowCardinality(String)', 'LowCardinality(String)', 'Array(LowCardinality(String))',
                # Other fields
                'UInt8', 'UInt8',
                'Nullable(UInt64)', 'Nullable(String)', 'JSON', 'JSON', 'Array(Nullable(String))',
                'UInt32', 'UInt32', 'UInt32', 'UInt32', 'DateTime64(3, \'UTC\')'
            ]

            return (data, column_names, column_type_names)
        
        return None

    def get_clickhouse_table(self) -> str:
        return "redb_macho_features"