Jadwiga R. Bienkowska

17 papers B 3C 1Misc 2Journal 9Unranked 2
YearRankTypeTitle / Venue / Authors
2023 — conf
Single-cell gene expression prediction using H&E images based on spatial transcriptomics.
Digital and Computational Pathology
Chao-Hui Huang, Yoson Park, Jincheng Pang, Jadwiga R. Bienkowska
2019 — conf
Detecting somatic mutations with high accuracy in plasma cell-free DNA with TNER2.
BIBM
Shibing Deng, Joy Hsu, Jadwiga R. Bienkowska, Paul A. Rejto, Tao Xie
2018 J jnl
TNER: a novel background error suppression method for mutation detection in circulating tumor DNA.
BMC Bioinform.
Shibing Deng, Maruja Lira, Donghui Huang, Kai Wang, Crystal Valdez, Jennifer Kinong, Paul A. Rejto, Jadwiga R. Bienkowska, James Hardwick, Tao Xie
2015 J jnl
Discovering What Dimensionality Reduction Really Tells Us About RNA-Seq Data.
J. Comput. Biol.
Sean Simmons, Jian Peng, Jadwiga R. Bienkowska, Bonnie Berger
2014 J jnl
ProbeSelect: selecting differentially expressed probes in transcriptional profile data.
Bioinform.
Raghavendra Hosur, Suzanne Szak, Alice Thai, Norm Allaire, Jadwiga R. Bienkowska
2011 J jnl
Causal Modeling Using Network Ensemble Simulations of Genetic and Gene Expression Data Predicts Genes Involved in Rheumatoid Arthritis.
PLoS Comput. Biol.
Heming Xing, Paul D. McDonagh, Jadwiga R. Bienkowska, Tanya Cashorali, Karl Runge, Robert E. Miller, Dave DeCaprio, Bruce Church, Ronenn Roubenoff, Iya G. Khalil, John Carulli
2008 J jnl
Optimal contact map alignment of protein-protein interfaces.
Bioinform.
Vinay Pulim, Bonnie Berger, Jadwiga R. Bienkowska
2007 Misc conf
Lthreader: Prediction of Ligand-Receptor Interactions Using Localized Threading.
Pacific Symposium on Biocomputing
Vinay Pulim, Jadwiga R. Bienkowska, Bonnie Berger
2007 C conf
PANP - a New Method of Gene Detection on Oligonucleotide Expression Arrays.
BIBE
Peter Warren, Deanne M. Taylor, Paolo G. V. Martini, Jennifer Jackson, Jadwiga R. Bienkowska
2005 Misc conf
GOTrees: Predicting GO Associations from Protein Domain Composition Using Decision Trees.
Pacific Symposium on Biocomputing
Boris Hayete, Jadwiga R. Bienkowska
2002 J jnl
Using fold recognition to search for useful proteins: Bayesian approach to fold recognition.
Briefings Bioinform.
Jadwiga R. Bienkowska
2001 J jnl
Automatic Pattern Embedding in Protein Structure Models.
IEEE Intell. Syst.
Jadwiga R. Bienkowska, Hongxian He, Temple F. Smith
2000 B conf
Comprehensive statistical method for protein fold recognition.
RECOMB
Jadwiga R. Bienkowska, Lihua Yu, Sophia Zarakhovich, Robert G. Rogers, Temple F. Smith
1999 B conf
A method for optimal design of a threading scoring function.
RECOMB
Jadwiga R. Bienkowska, Robert G. Rogers, Temple F. Smith
1999 J jnl
Performance of Threading Scoring Functions Designed Using New Optimization Method.
J. Comput. Biol.
Jadwiga R. Bienkowska, Robert G. Rogers, Temple F. Smith
1997 J jnl
Current Limitations to Protein Threading Approaches.
J. Comput. Biol.
Temple F. Smith, Loredana Lo Conte, Jadwiga R. Bienkowska, Chrysanthe Gaitatzes, Robert G. Rogers, Richard H. Lathrop
1997 B conf
The threading approach to the inverse protein folding problem.
RECOMB
Temple F. Smith, Loredana Lo Conte, Jadwiga R. Bienkowska, Robert G. Rogers, Chrysanthe Gaitatzes, Richard H. Lathrop