Jacques Rougemont

13 papers Journal 12Unranked 1
YearRankTypeTitle / Venue / Authors
2019 J jnl
Bioinform.
Rachel Jeitziner, Mathieu Carrière, Jacques Rougemont, Steve Oudot, Kathryn Hess, Cathrin Brisken
2017 J jnl
Nucleic Acids Res.
Fabrice P. A. David, Jacques Rougemont, Bart Deplancke
2014 J jnl
Nucleic Acids Res.
Heinz Stockinger, Adrian M. Altenhoff, Konstantin Arnold, Amos Bairoch, Frederic B. Bastian, Sven Bergmann, Lydie Bougueleret, Philipp Bucher, Mauro Delorenzi, Lydie Lane, Philippe Le Mercier, Frédérique Lisacek, Olivier Michielin, Patricia M. Palagi, Jacques Rougemont, Torsten Schwede, Christian von Mering, Erik van Nimwegen, Daniel Walther, Ioannis Xenarios, Mihaela Zavolan, Evgeny M. Zdobnov, Vincent Zoete, Ron D. Appel
2013 conf
WPES
Erman Ayday, Jean Louis Raisaro, Jean-Pierre Hubaux, Jacques Rougemont
2011 J jnl
Database J. Biol. Databases Curation
Carine Gubelmann, Alexandre Gattiker, Andreas Massouras, Korneel Hens, Fabrice P. A. David, Frederik Decouttere, Jacques Rougemont, Bart Deplancke
2010 J jnl
Biosyst.
Gautier Stoll, Mirko Bischofberger, Jacques Rougemont, Felix Naef
2009 J jnl
BMC Bioinform.
Alexandre Gattiker, Leandro Hermida, Robin Liechti, Ioannis Xenarios, Olivier Collin, Jacques Rougemont, Michael Primig
2009 J jnl
Nucleic Acids Res.
Alexandre Gattiker, Christophe Dessimoz, Adrian Schneider, Ioannis Xenarios, Marco Pagni, Jacques Rougemont
2008 J jnl
BMC Bioinform.
Jacques Rougemont, Arnaud Amzallag, Christian Iseli, Laurent Farinelli, Ioannis Xenarios, Felix Naef
2006 J jnl
Bioinform.
Gautier Stoll, Jacques Rougemont, Felix Naef
2006 J jnl
Bioinform.
Frédéric Guillaume, Jacques Rougemont
2003 J jnl
BMC Bioinform.
Jacques Rougemont, Pascal Hingamp
2002 J jnl
SIAM J. Numer. Anal.
Gabriel J. Lord, Jacques Rougemont
tests/unit/test_apk_apktool_wrapper.py
← Index tests/unit/test_apk_apktool_wrapper.py python
"""
Unit tests for apktool wrapper subprocess management and smali directory detection.

All subprocess calls are mocked — no apktool/Java installation required.
"""
import os
import tempfile

import pytest
from unittest.mock import MagicMock, patch

pytestmark = [pytest.mark.unit, pytest.mark.apk, pytest.mark.decompile]


class TestApktoolDisassembler:
    """Tests for ApktoolDisassembler subprocess wrapper."""

    @patch.dict(os.environ, {}, clear=False)
    def test_init_defaults(self):
        os.environ.pop("APKTOOL_PATH", None)
        from redb.extractors.decompiler.apk.apktool_wrapper import ApktoolDisassembler
        a = ApktoolDisassembler()
        assert a.apktool_path == "apktool"
        assert a.timeout == 120

    def test_init_custom(self):
        from redb.extractors.decompiler.apk.apktool_wrapper import ApktoolDisassembler
        a = ApktoolDisassembler(apktool_path="/opt/apktool", timeout=120)
        assert a.apktool_path == "/opt/apktool"
        assert a.timeout == 120

    def test_init_from_env(self):
        from redb.extractors.decompiler.apk.apktool_wrapper import ApktoolDisassembler
        with patch.dict(os.environ, {"APKTOOL_PATH": "/usr/bin/apktool", "APKTOOL_TIMEOUT": "90"}):
            a = ApktoolDisassembler()
            assert a.apktool_path == "/usr/bin/apktool"
            assert a.timeout == 90

    @patch("subprocess.Popen")
    def test_disassemble_success(self, mock_popen):
        from redb.extractors.decompiler.apk.apktool_wrapper import ApktoolDisassembler
        mock_proc = MagicMock()
        mock_proc.communicate.return_value = ("output", "")
        mock_proc.returncode = 0
        mock_popen.return_value = mock_proc

        a = ApktoolDisassembler()
        result = a.disassemble("/test.apk", "/output")
        assert result is True

    @patch("subprocess.Popen")
    def test_disassemble_failure(self, mock_popen):
        from redb.extractors.decompiler.apk.apktool_wrapper import ApktoolDisassembler
        mock_proc = MagicMock()
        mock_proc.communicate.return_value = ("", "error")
        mock_proc.returncode = 1
        mock_popen.return_value = mock_proc

        a = ApktoolDisassembler(log=MagicMock())
        result = a.disassemble("/test.apk", "/output")
        assert result is False

    @patch("subprocess.Popen")
    def test_disassemble_timeout(self, mock_popen):
        from redb.extractors.decompiler.apk.apktool_wrapper import ApktoolDisassembler
        import subprocess
        mock_proc = MagicMock()
        mock_proc.communicate.side_effect = subprocess.TimeoutExpired(cmd="apktool", timeout=10)
        mock_proc.pid = 12345
        mock_popen.return_value = mock_proc

        with patch("os.getpgid", return_value=12345), \
             patch("os.killpg"):
            a = ApktoolDisassembler(timeout=10, log=MagicMock())
            result = a.disassemble("/test.apk", "/output")
            assert result is False

    @patch("subprocess.Popen", side_effect=FileNotFoundError)
    def test_disassemble_not_found(self, mock_popen):
        from redb.extractors.decompiler.apk.apktool_wrapper import ApktoolDisassembler
        a = ApktoolDisassembler(log=MagicMock())
        result = a.disassemble("/test.apk", "/output")
        assert result is False

    @patch("subprocess.Popen")
    def test_disassemble_command_args(self, mock_popen):
        from redb.extractors.decompiler.apk.apktool_wrapper import ApktoolDisassembler
        mock_proc = MagicMock()
        mock_proc.communicate.return_value = ("", "")
        mock_proc.returncode = 0
        mock_popen.return_value = mock_proc

        a = ApktoolDisassembler(apktool_path="/opt/apktool")
        a.disassemble("/test.apk", "/output")

        cmd = mock_popen.call_args[0][0]
        assert cmd[0] == "/opt/apktool"
        assert "d" in cmd
        assert "--no-res" in cmd
        assert "--force" in cmd
        assert "/test.apk" in cmd

    def test_get_smali_directories_single_dex(self):
        from redb.extractors.decompiler.apk.apktool_wrapper import ApktoolDisassembler
        with tempfile.TemporaryDirectory() as tmpdir:
            os.makedirs(os.path.join(tmpdir, "smali"))
            a = ApktoolDisassembler()
            dirs = a.get_smali_directories(tmpdir)
            assert len(dirs) == 1
            assert dirs[0].endswith("smali")

    def test_get_smali_directories_multi_dex(self):
        from redb.extractors.decompiler.apk.apktool_wrapper import ApktoolDisassembler
        with tempfile.TemporaryDirectory() as tmpdir:
            os.makedirs(os.path.join(tmpdir, "smali"))
            os.makedirs(os.path.join(tmpdir, "smali_classes2"))
            os.makedirs(os.path.join(tmpdir, "smali_classes3"))
            # Should not be included
            os.makedirs(os.path.join(tmpdir, "res"))
            os.makedirs(os.path.join(tmpdir, "original"))

            a = ApktoolDisassembler()
            dirs = a.get_smali_directories(tmpdir)
            assert len(dirs) == 3

    def test_get_smali_directories_empty(self):
        from redb.extractors.decompiler.apk.apktool_wrapper import ApktoolDisassembler
        with tempfile.TemporaryDirectory() as tmpdir:
            a = ApktoolDisassembler()
            dirs = a.get_smali_directories(tmpdir)
            assert dirs == []

    def test_get_smali_directories_nonexistent(self):
        from redb.extractors.decompiler.apk.apktool_wrapper import ApktoolDisassembler
        a = ApktoolDisassembler()
        dirs = a.get_smali_directories("/nonexistent/path")
        assert dirs == []