Jacques Gautrais

18 papers Journal 12Unranked 6
YearRankTypeTitle / Venue / Authors
2026 J jnl
PLoS Comput. Biol.
Anaïs Vallet, Stéphane Blanco, Coline Chevallier, Francis Eustache, Jacques Gautrais, Jean-Yves Grandpeix, Jean-Louis Joly, Shailendra Segobin, Pierre Gagnepain
2024 J jnl
Comput. Phys. Commun.
Léa Penazzi, Stéphane Blanco, C. Caliot, Christophe Coustet, Mouna El Hafi, Richard Fournier, Jacques Gautrais, Anna Golijanek-Jedrzejczyk, M. Sans
2023 J jnl
ACM Trans. Graph.
Mégane Bati, Stéphane Blanco, Christophe Coustet, Vincent Eymet, Vincent Forest, Richard Fournier, Jacques Gautrais, Nicolas Mellado, Mathias Paulin, Benjamin Piaud
2023 J jnl
PLoS Comput. Biol.
Ana Morán, Mathieu Lihoreau, Alfonso Pérez-Escudero, Jacques Gautrais
2021 J jnl
PLoS Comput. Biol.
Thibault Dubois, Cristian Pasquaretta, Andrew B. Barron, Jacques Gautrais, Mathieu Lihoreau
2016 J jnl
J. Comput. Phys.
Sebastian Weitz, Stéphane Blanco, Julien Charon, Jérémi Dauchet, Mouna El Hafi, Vincent Eymet, Olivier Farges, Richard Fournier, Jacques Gautrais
2012 J jnl
PLoS Comput. Biol.
Jacques Gautrais, Francesco Ginelli, Richard Fournier, Stéphane Blanco, Marc Soria, Hugues Chaté, Guy Theraulaz
2011 conf
ECAL
Anaïs Khuong, Guy Theraulaz, Christian Jost, Andrea Perna, Jacques Gautrais
2009 J jnl
Adapt. Behav.
Simon Garnier, Jacques Gautrais, Masoud Asadpour, Christian Jost, Guy Theraulaz
2008 J jnl
Artif. Life
Simon Garnier, Christian Jost, Jacques Gautrais, Masoud Asadpour, Gilles Caprari, Raphaël Jeanson, Anne Grimal, Guy Theraulaz
2007 conf
BIOWIRE
Andrea Perna, Christian Jost, Sergi Valverde, Jacques Gautrais, Guy Theraulaz, Pascale Kuntz
2007 J jnl
Swarm Intell.
Simon Garnier, Jacques Gautrais, Guy Theraulaz
2006 J jnl
IEEE Intell. Syst.
Sergi Valverde, Guy Theraulaz, Jacques Gautrais, Vincent Fourcassié, Ricard V. Solé
2005 conf
ECAL
Simon Garnier, Christian Jost, Raphaël Jeanson, Jacques Gautrais, Masoud Asadpour, Gilles Caprari, Guy Theraulaz
2005 conf
SIS
Simon Garnier, Christian Jost, Raphaël Jeanson, Jacques Gautrais, Masoud Asadpour, Gilles Caprari, Guy Theraulaz
2004 conf
ANTS Workshop
Karla Vittori, Jacques Gautrais, Aluízio F. R. Araújo, Vincent Fourcassié, Guy Theraulaz
1999 J jnl
Neurocomputing
Arnaud Delorme, Jacques Gautrais, Rufin Van Rullen, Simon J. Thorpe
1996 conf
NIPS
Simon J. Thorpe, Jacques Gautrais
redb/extractors/elf_extractors/elf_relocations.py
← Index redb/extractors/elf_extractors/elf_relocations.py python
import inspect
from datetime import datetime, timezone
from typing import Any, List, Dict

from elftools.elf.elffile import ELFFile
from elftools.common.exceptions import ELFError

from redb.extractors.enum import Tag
from redb.extractors.elf_extractor import ELFExtractor
from redb.models.dataclasses import ELFRelocation


class ELFRelocationExtractor(ELFExtractor):

    def __init__(
        self,
        filepath,
        log,
        exporters=None,
        index_prefix=None,
        elastic_index=None,
        known_benign=False,
        known_malicious=False,
        elf=None,
    ):
        super().__init__(
            filepath,
            log,
            exporters,
            index_prefix,
            elastic_index,
            known_benign,
            known_malicious,
            elf,
        )
        self.elf_relocations = []
        self.elastic_index = self.index_prefix + "-elf_relocations"
        self.log.debug(inspect.currentframe().f_code.co_name)

    def _get_relocation_type_string(self, reloc_type: int, machine_arch: str) -> str:
        """Convert relocation type number to human-readable string based on architecture."""
        # This is a simplified mapping - real implementation would need comprehensive
        # architecture-specific relocation type mappings

        common_types = {
            0: "R_NONE",
            1: "R_DIRECT",
            2: "R_PC_RELATIVE",
            3: "R_GOT",
            4: "R_PLT",
            5: "R_COPY",
            6: "R_GLOB_DAT",
            7: "R_JMP_SLOT",
            8: "R_RELATIVE"
        }

        # Architecture-specific mappings could be added here
        if machine_arch == "x86_64":
            x86_64_types = {
                1: "R_X86_64_64",
                2: "R_X86_64_PC32",
                3: "R_X86_64_GOT32",
                4: "R_X86_64_PLT32",
                5: "R_X86_64_COPY",
                6: "R_X86_64_GLOB_DAT",
                7: "R_X86_64_JUMP_SLOT",
                8: "R_X86_64_RELATIVE"
            }
            return x86_64_types.get(reloc_type, f"R_X86_64_{reloc_type}")
        elif machine_arch == "x86":
            i386_types = {
                1: "R_386_32",
                2: "R_386_PC32",
                3: "R_386_GOT32",
                4: "R_386_PLT32",
                5: "R_386_COPY",
                6: "R_386_GLOB_DAT",
                7: "R_386_JMP_SLOT",
                8: "R_386_RELATIVE"
            }
            return i386_types.get(reloc_type, f"R_386_{reloc_type}")

        return common_types.get(reloc_type, f"R_UNKNOWN_{reloc_type}")

    def _extract_relocation_data(self, relocation, section_name: str, machine_arch: str) -> Dict:
        """Extract data from a single relocation entry."""
        try:
            # Get relocation offset
            relocation_offset = relocation.entry.get('r_offset', 0)

            # Get relocation type
            relocation_type = relocation.entry.get('r_info_type', 0)

            # Get symbol index
            relocation_symbol_index = relocation.entry.get('r_info_sym', 0)

            # Get addend (only present in RELA sections)
            relocation_addend = None
            if hasattr(relocation.entry, 'r_addend'):
                relocation_addend = relocation.entry.get('r_addend', 0)

            # Get symbol name if available
            relocation_symbol_name = ""
            if hasattr(relocation, 'symbol') and relocation.symbol:
                relocation_symbol_name = relocation.symbol.name or f"<symbol_{relocation_symbol_index}>"
            else:
                relocation_symbol_name = f"<symbol_{relocation_symbol_index}>"

            # Get type string mapping
            relocation_type_str = self._get_relocation_type_string(relocation_type, machine_arch)

            return ELFRelocation(
                relocation_offset=relocation_offset,
                relocation_type=relocation_type,
                relocation_type_str=relocation_type_str,
                relocation_symbol_index=relocation_symbol_index,
                relocation_symbol_name=relocation_symbol_name,
                relocation_section=section_name,
                relocation_addend=relocation_addend
            )

        except Exception as e:
            self.log.error(f"Error extracting relocation data: {e}")
            return None

    def _extract_relocations_from_section(self, section, machine_arch: str) -> List[Dict]:
        """Extract all relocations from a relocation section."""
        relocations = []

        try:
            if not hasattr(section, 'iter_relocations'):
                return relocations

            section_name = section.name or f"<unnamed_section>"

            for relocation in section.iter_relocations():
                reloc_data = self._extract_relocation_data(relocation, section_name, machine_arch)
                if reloc_data:
                    relocations.append(reloc_data)

        except Exception as e:
            self.log.error(f"Error extracting relocations from section {section.name}: {e}")

        return relocations

    def tag(self):
        return Tag.ELF_RELOCATIONS.value if hasattr(Tag, 'ELF_RELOCATIONS') else "elf_relocations"

    def extract(self):
        try:
            self.log.debug(inspect.currentframe().f_code.co_name)

            def extract_data(elf):
                # Get architecture for relocation type mapping
                machine_arch = self._get_architecture()
                all_relocations = []

                # Iterate through all sections looking for relocation sections with per-section error handling
                for section_index, section in enumerate(elf.iter_sections()):
                    try:
                        # Check if this is a relocation section (.rel or .rela)
                        if (section.name and
                            (section.name.startswith('.rel') or section.name.startswith('.rela')) and
                            hasattr(section, 'iter_relocations')):

                            section_relocations = self._extract_relocations_from_section(section, machine_arch)
                            all_relocations.extend(section_relocations)
                            self.log.debug(f"Extracted {len(section_relocations)} relocations from section {section.name}")
                    except Exception as e:
                        section_name = getattr(section, 'name', f'section_{section_index}')
                        self.log.warning(f"Error processing relocation section {section_name}: {e}")
                        # Continue processing other sections

                return all_relocations

            if not self._is_elf_file():
                return None

            result = self._with_elf_file(extract_data)
            if result is None:
                return None

            self.elf_relocations = result
            return self.elf_relocations

        except Exception as e:
            self.log.error(f"Error extracting ELF relocations {self.hash.sha256}: {e}")
            return None

    def prepare_export_data(self, exporter_type: str) -> Any:
        self.log.debug(inspect.currentframe().f_code.co_name)

        if exporter_type == "ElasticsearchExporter":
            return self.elf_relocations
        elif exporter_type == "ClickHouseExporter":
            try:
                # Return valid empty structure if no relocations (e.g., statically linked binary)
                # None is reserved for actual errors

                # Prepare data arrays for all relocations
                data = []
                current_time = datetime.now(timezone.utc)
                for reloc in self.elf_relocations:
                    row = [
                        self.sha256,
                        self.md5,
                        self.sha1,
                        reloc.relocation_offset,
                        reloc.relocation_type,
                        reloc.relocation_type_str,
                        reloc.relocation_symbol_index,
                        reloc.relocation_symbol_name,
                        reloc.relocation_addend,
                        reloc.relocation_section,
                        current_time
                    ]
                    data.append(row)

                column_names = [
                    'sha256', 'md5', 'sha1',
                    'relocation_offset', 'relocation_type', 'relocation_type_str',
                    'relocation_symbol_index', 'relocation_symbol_name',
                    'relocation_addend', 'relocation_section',
                    'analysis_date'
                ]

                if not data:
                    return None

                column_type_names = [
                    'FixedString(64)', 'FixedString(32)', 'FixedString(40)',
                    'UInt64', 'UInt32', 'LowCardinality(String)',
                    'UInt32', 'LowCardinality(String)',
                    'Nullable(Int64)', 'LowCardinality(String)',
                    'DateTime64(3, \'UTC\')'
                ]

                return (data, column_names, column_type_names)

            except Exception as e:
                self.log.error(f"Error preparing export data: {e}")
                raise

    def get_clickhouse_table(self) -> str:
        return "redb_elf_relocations"