Jacques Fellay

21 papers A* 1Misc 1Journal 13Unranked 6
YearRankTypeTitle / Venue / Authors
2025 J jnl
HIV-phyloTSI: subtype-independent estimation of time since HIV-1 infection for cross-sectional measures of population incidence using deep sequence data.
BMC Bioinform.
Tanya Golubchik, Lucie Abeler-Dörner, Matthew Hall, Chris Wymant, David G. Bonsall, George Macintyre-Cockett, Laura Thomson, Jared M. Baeten, Connie L. Celum, Ronald Galiwango, Barry Kosloff, Mohammed Limbada, Andrew Mujugira, Nelly R. Mugo, Astrid Gall, François Blanquart, Margreet Bakker, Daniela Bezemer, Swee Hoe Ong, Jan Albert, Norbert Bannert, Jacques Fellay, Barbara Gunsenheimer-Bartmeyer, Huldrych F. Günthard, Pia Kivelä, Roger D. Kouyos, Laurence Meyer, Kholoud Porter, Ard van Sighem, Mark van der Valk, Ben Berkhout, Paul Kellam, Marion Cornelissen, Peter Reiss, Helen Ayles, David N. Burns, Sarah Fidler, Mary Kate Grabowski, Richard J. Hayes, Joshua T. Herbeck, Joseph Kagaayi, Pontiano Kaleebu, Jairam R. Lingappa, Deogratius Ssemwanga, Susan H. Eshleman, Myron S. Cohen, Oliver Ratmann, Oliver Laeyendecker, Christophe Fraser
2025 J jnl
HIVMedQA: Benchmarking large language models for HIV medical decision support.
CoRR
Gonzalo Cardenal-Antolin, Jacques Fellay, Bashkim Jaha, Roger D. Kouyos, Niko Beerenwinkel, Diane Duroux
2022 J jnl
Using population-specific add-on polymorphisms to improve genotype imputation in underrepresented populations.
PLoS Comput. Biol.
Zhi Ming Xu, Sina Rüeger, Michaela Zwyer, Daniela Brites, Hellen Hiza, Miriam Reinhard, Liliana K. Rutaihwa, Sonia Borrell, Faima Isihaka, Hosiana Temba, Thomas Maroa, Rastard Naftari, Jerry Hella, Mohamed Sasamalo, Klaus Reither, Damien Portevin, Sebastien Gagneux, Jacques Fellay
2021 J jnl
Citizen-centered, auditable and privacy-preserving population genomics.
Nat. Comput. Sci.
Dennis Grishin, Jean Louis Raisaro, Juan Ramón Troncoso-Pastoriza, Kamal Obbad, Kevin Quinn, Mickaël Misbach, Jared Gollhardt, João Sá Sousa, Jacques Fellay, George M. Church, Jean-Pierre Hubaux
2020 Misc conf
GenoShare: Supporting Privacy-Informed Decisions for Sharing Individual-Level Genetic Data.
AMIA
Jean Louis Raisaro, Juan Ramón Troncoso-Pastoriza, Yamane El-Zein, Mathias Humbert, Jacques Fellay, Carmela Troncoso, Jean-Pierre Hubaux
2020 — conf
GenoShare: Supporting Privacy-Informed Decisions for Sharing Individual-Level Genetic Data.
MIE
Jean Louis Raisaro, Juan Ramón Troncoso-Pastoriza, Yamane El-Zein, Mathias Humbert, Carmela Troncoso, Jacques Fellay, Jean-Pierre Hubaux
2020 J jnl
Revolutionizing Medical Data Sharing Using Advanced Privacy Enhancing Technologies: Technical, Legal and Ethical Synthesis.
CoRR
James Scheibner, Jean Louis Raisaro, Juan Ramón Troncoso-Pastoriza, Marcello Ienca, Jacques Fellay, Effy Vayena, Jean-Pierre Hubaux
2020 — conf
SPHN/PHRT - MedCo in Action: Empowering the Swiss Molecular Tumor Board with Privacy-Preserving and Real-Time Patient Discovery.
MIE
Jean Louis Raisaro, Juan Ramón Troncoso-Pastoriza, Sylvain Pradervand, Michel A. Cuendet, Mickaël Misbach, João Sá Sousa, Francesco Marino, Nicolas Freundler, Nicolas Rosat, David Cavin, Alexander B. Leichtle, Jacques Fellay, Olivier Michielin, Jean-Pierre Hubaux
2018 J jnl
Are privacy-enhancing technologies for genomic data ready for the clinic? A survey of medical experts of the Swiss HIV Cohort Study.
J. Biomed. Informatics
Jean Louis Raisaro, Paul J. McLaren, Jacques Fellay, Matthias Cavassini, Catherine Klersy, Jean-Pierre Hubaux
2018 — conf
Sequence Alignment Through the Looking Glass.
IPDPS Workshops
Raja Appuswamy, Jacques Fellay, Nimisha Chaturvedi
2017 J jnl
Estimating the Respective Contributions of Human and Viral Genetic Variation to HIV Control.
PLoS Comput. Biol.
István Bartha, Paul J. McLaren, Chanson J. Brumme, P. Richard Harrigan, Amalio Telenti, Jacques Fellay
2017 J jnl
SQC: secure quality control for meta-analysis of genome-wide association studies.
Bioinform.
Zhicong Huang, Huang Lin, Jacques Fellay, Zoltán Kutalik, Jean-Pierre Hubaux
2015 A* conf
GenoGuard: Protecting Genomic Data against Brute-Force Attacks.
IEEE Symposium on Security and Privacy
Zhicong Huang, Erman Ayday, Jacques Fellay, Jean-Pierre Hubaux, Ari Juels
2015 J jnl
Privacy in the Genomic Era.
ACM Comput. Surv.
Muhammad Naveed, Erman Ayday, Ellen Wright Clayton, Jacques Fellay, Carl A. Gunter, Jean-Pierre Hubaux, Bradley A. Malin, Xiaofeng Wang
2015 J jnl
Privacy in the Genomic Era.
IACR Cryptol. ePrint Arch.
Muhammad Naveed, Erman Ayday, Ellen Wright Clayton, Jacques Fellay, Carl A. Gunter, Jean-Pierre Hubaux, Bradley A. Malin, Xiaofeng Wang
2015 — conf
Quantifying Genomic Privacy via Inference Attack with High-Order SNV Correlations.
IEEE Symposium on Security and Privacy Workshops
Sahel Shariati Samani, Zhicong Huang, Erman Ayday, Mark J. Elliot, Jacques Fellay, Jean-Pierre Hubaux, Zoltán Kutalik
2015 J jnl
The Characteristics of Heterozygous Protein Truncating Variants in the Human Genome.
PLoS Comput. Biol.
István Bartha, Antonio Rausell, Paul J. McLaren, Pejman Mohammadi, Manuel Tardaguila, Nimisha Chaturvedi, Jacques Fellay, Amalio Telenti
2014 J jnl
Analysis of Stop-Gain and Frameshift Variants in Human Innate Immunity Genes.
PLoS Comput. Biol.
Antonio Rausell, Pejman Mohammadi, Paul J. McLaren, István Bartha, Ioannis Xenarios, Jacques Fellay, Amalio Telenti
2014 J jnl
Privacy and Security in the Genomic Era.
CoRR
Muhammad Naveed, Erman Ayday, Ellen Wright Clayton, Jacques Fellay, Carl A. Gunter, Jean-Pierre Hubaux, Bradley A. Malin, Xiaofeng Wang
2013 — conf
Privacy-Preserving Computation of Disease Risk by Using Genomic, Clinical, and Environmental Data.
HealthTech
Erman Ayday, Jean Louis Raisaro, Paul J. McLaren, Jacques Fellay, Jean-Pierre Hubaux
2011 — conf
Joint analysis of host and pathogen genomes.
BIBM Workshops
István Bartha, Amalio Telenti, Viktor Müller, Jacques Fellay