Jacob L. Jaremko

63 papers A 1B 2Journal 38Unranked 22

Year	Rank	Type	Title / Venue / Authors
2026	J	`jnl`	Dynamic automated template generation in knee MRI for region-specific arthritis assessment. Neurocomputing Soolmaz Abbasi, Stephanie Wichuk, Banafshe Felfeliyan, Rory Gilliland, Steel McDonald, Assefa Seyoum Wahd, Abhilash Rakkunedeth, Jacob L. Jaremko
2025	J	`jnl`	FlexICL: A Flexible Visual In-context Learning Framework for Elbow and Wrist Ultrasound Segmentation. CoRR Yuyue Zhou, Jessica Knight, Shrimanti Ghosh, Banafshe Felfeliyan, Jacob L. Jaremko, Abhilash Rakkunedeth Hareendranathan
2025	J	`jnl`	Overcoming barriers in the use of artificial intelligence in point of care ultrasound. npj Digit. Medicine Roberto Vega, Masood Dehghan, Arun Nagdev, Brian Buchanan, Jeevesh Kapur, Jacob L. Jaremko, Dornoosh Zonoobi
2025	J	`jnl`	Retuve: Automated Multi-Modality Analysis of Hip Dysplasia with Open Source AI. CoRR Adam McArthur, Stephanie Wichuk, Stephen Burnside, Andrew Kirby, Alexander Scammon, Damian Sol, Abhilash Rakkunedeth, Jacob L. Jaremko
2025	J	`jnl`	Retuve: Automated multi-modality analysis of hip dysplasia with open source AI. Softw. Impacts Adam McArthur, Stephanie Wichuk, Stephen Burnside, Andrew Kirby, Alexander Scammon, Damian Sol, Abhilash Rakkunedeth Hareendranathan, Jacob L. Jaremko
2025	J	`jnl`	Sam2Rad: A segmentation model for medical images with learnable prompts. Comput. Biol. Medicine Assefa Seyoum Wahd, Banafshe Felfeliyan, Yuyue Zhou, Shrimanti Ghosh, Adam McArthur, Jiechen Zhang, Jacob L. Jaremko, Abhilash Rakkunedeth
2025	—	`conf`	Shoulder Rotator Cuff Tear Detection from Ultrasound Videos Using Deep Reinforcement Learning. ISBI Shrimanti Ghosh, Geetika Vadali, Ayush Singh, Yuyue Zhou, Banafshe Felfeliyan, Assefa Seyoum Wahd, Jessica Knight, Mahesh R. Panicker, Jacob L. Jaremko, Abhilash Rakkunedeth Hareendranathan
2025	—	`conf`	Time-Contrastive Pretraining for In-Context Image and Video Segmentation. MICCAI (1) Assefa Seyoum Wahd, Jacob L. Jaremko, Abhilash Rakkunedeth Hareendranathan
2025	J	`jnl`	Time-Contrastive Pretraining for In-Context Image and Video Segmentation. CoRR Assefa Seyoum Wahd, Jacob L. Jaremko, Abhilash Rakkunedeth Hareendranathan
2024	J	`jnl`	A Simple Framework Uniting Visual In-context Learning with Masked Image Modeling to Improve Ultrasound Segmentation. CoRR Yuyue Zhou, Banafshe Felfeliyan, Shrimanti Ghosh, Jessica Knight, Fatima Alves-Pereira, Christopher Keen, Jessica Küpper, Abhilash Rakkunedeth Hareendranathan, Jacob L. Jaremko
2024	J	`jnl`	Application Of Vision-Language Models For Assessing Osteoarthritis Disease Severity. CoRR Banafshe Felfeliyan, Yuyue Zhou, Shrimanti Ghosh, Jessica Küpper, Shaobo Liu, Abhilash Rakkunedeth Hareendranathan, Jacob L. Jaremko
2024	—	`conf`	Application of Vision-Language Models for Assessing Osteoarthritis. ISBI Banafshe Felfeliyan, Yuyue Zhou, Shrimanti Ghosh, Jessica Küpper, Shaobo Liu, Abhilash Rakkunedeth, Jacob L. Jaremko
2024	—	`conf`	Automated Detection of Shoulder Rotator Cuff Tendon Tears from Ultrasound Images by CNN-Autoencoder. ISBI Shrimanti Ghosh, Banafshe Felfeliyan, Yuyue Zhou, Shaobo Liu, Jessica Knight, Natasha Akhlaq, Jessica Küpper, Abhilash Rakkunedeth Hareendranathan, Jacob L. Jaremko
2024	—	`conf`	Domain Specific Transporter Framework to Detect Fractures in Ultrasound. EMBC Arpan Tripathi, Mahesh Raveendranatha Panicker, Jack Zhang, Naveenjyote Boora, Jacob L. Jaremko, Abhilash Rakkunedelh
2024	J	`jnl`	Sam2Rad: A Segmentation Model for Medical Images with Learnable Prompts. CoRR Assefa Seyoum Wahd, Banafshe Felfeliyan, Yuyue Zhou, Shrimanti Ghosh, Adam McArthur, Jiechen Zhang, Jacob L. Jaremko, Abhilash Rakkunedeth Hareendranathan
2024	—	`conf`	Semantic AutoSAM: Self-Prompting Segment Anything Model for Semantic Segmentation of Medical Images. EMBC Assefa Seyoum Wahd, Jessica Küpper, Jacob L. Jaremko, Abhilash Rakkunedeth Hareendranathan
2024	—	`conf`	SimICL: A Simple Visual In-context Learning Framework for Ultrasound Segmentation. EMBC Yuyue Zhou, Banafshe Felfeliyan, Shrimanti Ghosh, Jessica Knight, Fatima Alves-Pereira, Christopher Keen, Jessica Küpper, Abhilash Rakkunedeth Hareendranathan, Jacob L. Jaremko
2024	—	`conf`	Ultrasound for Automated Classification of Full-Thickness Rotator Cuff Tendon Tears using Deep Learning. EMBC Shrimanti Ghosh, Banafshe Felfeliyan, Yuyue Zhou, Jessica Knight, Natasha Akhlaq, Jessica Küpper, Abhilash Rakkunedeth Hareendranathan, Jacob L. Jaremko
2023	J	`jnl`	ACU2E-Net: A novel predict-refine attention network for segmentation of soft-tissue structures in ultrasound images. Comput. Biol. Medicine Sharanya Balachandran, Xuebin Qin, Chen Jiang, Ehsan Seyed Blouri, Amir Forouzandeh, Masood Dehghan, Dornoosh Zonoobi, Jeevesh Kapur, Jacob L. Jaremko, Kumaradevan Punithakumar
2023	—	`conf`	Self-Supervised Learning to More Efficiently Generate Segmentation Masks for Wrist Ultrasound. ASMUS@MICCAI Yuyue Zhou, Jessica Knight, Banafshe Felfeliyan, Shrimanti Ghosh, Fatima Alves-Pereira, Christopher Keen, Abhilash Rakkunedeth Hareendranathan, Jacob L. Jaremko
2023	J	`jnl`	Self-supervised TransUNet for Ultrasound regional segmentation of the distal radius in children. CoRR Yuyue Zhou, Jessica Knight, Banafshe Felfeliyan, Christopher Keen, Abhilash Rakkunedeth Hareendranathan, Jacob L. Jaremko
2023	J	`jnl`	Self-supervised-RCNN for medical image segmentation with limited data annotation. Comput. Medical Imaging Graph. Banafshe Felfeliyan, Nils D. Forkert, Abhilash Rakkunedeth Hareendranathan, David Cornel, Yuyue Zhou, Gregor Kuntze, Jacob L. Jaremko, Janet Lenore Ronsky
2023	J	`jnl`	Unsupervised Multi-Latent Space RL Framework for Video Summarization in Ultrasound Imaging. IEEE J. Biomed. Health Informatics Roshan P. Mathews, Mahesh Raveendranatha Panicker, Abhilash Rakkunedeth Hareendranathan, Yale Tung Chen, Jacob L. Jaremko, Brian Buchanan, Kiran Vishnu Narayan, Chandrasekharan Kesavadas, Greeta Mathews
2023	J	`jnl`	Unsupervised landmark detection and classification of lung infection using transporter neural networks. Comput. Biol. Medicine Arpan Tripathi, Mahesh Raveendranatha Panicker, Abhilash Rakkunedeth Hareendranathan, Jacob L. Jaremko, Yale Tung Chen, Kiran Vishnu Narayan, C. Kesavadas
2022	J	`jnl`	Domain-aware contrastive learning for ultrasound hip image analysis. Comput. Biol. Medicine Abhilash Rakkunedeth Hareendranathan, Arpan Tripathi, Mahesh Raveendranatha Panicker, Yuyue Zhou, Jessica Knight, Jacob L. Jaremko
2022	J	`jnl`	Improved-Mask R-CNN: Towards an accurate generic MSK MRI instance segmentation platform (data from the Osteoarthritis Initiative). Comput. Medical Imaging Graph. Banafshe Felfeliyan, Abhilash Rakkunedeth, Gregor Kuntze, Jacob L. Jaremko, Janet Lenore Ronsky
2022	—	`conf`	RL Based Unsupervised Video Summarization Framework for Ultrasound Imaging. ASMUS@MICCAI Roshan P. Mathews, Mahesh Raveendranatha Panicker, Abhilash Rakkunedeth Hareendranathan, Yale Tung Chen, Jacob L. Jaremko, Brian Buchanan, Kiran Vishnu Narayan, Kesavadas Chandrasekharan, Greeta Mathews
2022	J	`jnl`	Self-Supervised-RCNN for Medical Image Segmentation with Limited Data Annotation. CoRR Banafshe Felfeliyan, Abhilash Rakkunedeth Hareendranathan, Gregor Kuntze, David Cornell, Nils D. Forkert, Jacob L. Jaremko, Janet Lenore Ronsky
2022	J	`jnl`	Weakly Supervised Medical Image Segmentation With Soft Labels and Noise Robust Loss. CoRR Banafshe Felfeliyan, Abhilash Rakkunedeth Hareendranathan, Gregor Kuntze, Stephanie Wichuk, Nils D. Forkert, Jacob L. Jaremko, Janet Lenore Ronsky
2022	—	`conf`	Weakly Supervised Medical Image Segmentation with Soft Labels and Noise Robust Loss. ICPR Workshops (2) Banafshe Felfeliyan, Abhilash Rakkunedeth Hareendranathan, Gregor Kuntze, Stephanie Wichuk, Nils D. Forkert, Jacob L. Jaremko, Janet Lenore Ronsky
2022	B	`conf`	Wrist Ultrasound Segmentation by Deep Learning. AIME Yuyue Zhou, Abhilash Rakkunedeth, Christopher Keen, Jessica Knight, Jacob L. Jaremko
2021	—	`conf`	Automatic Assessment Of Hip Effusion From MRI. EMBC Abhilash Rakkunedeth Hareendranathan, Yungchan Jin, Banafshe Felfeliyan, Janet Lenore Ronsky, Bashiar Thejeel, Vanessa Quinn-Laurin, Jacob L. Jaremko
2021	J	`jnl`	Domain Specific Transporter Framework to Detect Fractures in Ultrasound. CoRR Arpan Tripathi, Abhilash Rakkunedeth Hareendranathan, Mahesh Raveendranatha Panicker, Jack Zhang, Naveenjyote Boora, Jacob L. Jaremko
2021	J	`jnl`	Improved-Mask R-CNN: Towards an Accurate Generic MSK MRI instance segmentation platform (Data from the Osteoarthritis Initiative). CoRR Banafshe Felfeliyan, Abhilash Rakkunedeth Hareendranathan, Gregor Kuntze, Jacob L. Jaremko, Janet Lenore Ronsky
2021	—	`conf`	Integrating User-Input into Deep Convolutional Neural Networks for Thyroid Nodule Segmentation. EMBC Rajshree Daulatabad, Roberto Vega, Jacob L. Jaremko, Jeevesh Kapur, Abhilash Rakkunedeth Hareendranathan, Kumaradevan Punithakumar
2021	J	`jnl`	Learning the Imaging Landmarks: Unsupervised Key point Detection in Lung Ultrasound Videos. CoRR Arpan Tripathi, Mahesh Raveendranatha Panicker, Abhilash Rakkunedeth Hareendranathan, Yale Tung Chen, Jacob L. Jaremko, Kiran Vishnu Narayan, Kesavadas C
2021	—	`conf`	MRI Knee Domain Translation for Unsupervised Segmentation By CycleGAN (data from Osteoarthritis initiative (OAI)). EMBC Banafshe Felfeliyan, Abhilash Rakkunedeth Hareendranathan, Gregor Kuntze, Jacob L. Jaremko, Janet Lenore Ronsky
2021	J	`jnl`	Physics Driven Domain Specific Transporter Framework with Attention Mechanism for Ultrasound Imaging. CoRR Arpan Tripathi, Abhilash Rakkunedeth, Mahesh Raveendranatha Panicker, Jack Zhang, Naveenjyote Boora, Jessica Knight, Jacob L. Jaremko, Yale Tung Chen, Kiran Vishnu Narayan, Kesavadas C
2021	J	`jnl`	Quantitative analysis of regional specific pelvic symmetry. Medical Biol. Eng. Comput. David Xinzheyang Li, Maha S. Ead, Kajsa K. Duke, Jacob L. Jaremko, Lindsey Westover
2021	J	`jnl`	Sample Efficient Learning of Image-Based Diagnostic Classifiers Using Probabilistic Labels. CoRR Roberto Vega, Pouneh Gorji, Zichen Zhang, Xuebin Qin, Abhilash Rakkunedeth Hareendranathan, Jeevesh Kapur, Jacob L. Jaremko, Russell Greiner
2021	A	`conf`	Sample efficient learning of image-based diagnostic classifiers via probabilistic labels. AISTATS Roberto Vega, Pouneh Gorji, Zichen Zhang, Xuebin Qin, Abhilash Rakkunedeth Hareendranathan, Jeevesh Kapur, Jacob L. Jaremko, Russell Greiner
2021	—	`conf`	TUN-Det: A Novel Network for Thyroid Ultrasound Nodule Detection. MICCAI (1) Atefeh Shahroudnejad, Xuebin Qin, Sharanya Balachandran, Masood Dehghan, Dornoosh Zonoobi, Jacob L. Jaremko, Jeevesh Kapur, Martin Jägersand, Michelle Noga, Kumaradevan Punithakumar
2021	—	`conf`	Thyroid Nodule Segmentation and Classification Using Deep Convolutional Neural Network and Rule-based Classifiers. EMBC Atefeh Shahroudnejad, Roberto Vega, Amir Forouzandeh, Sharanya Balachandran, Jacob L. Jaremko, Michelle Noga, Abhilash Rakkunedeth Hareendranathan, Jeevesh Kapur, Kumaradevan Punithakumar
2021	J	`jnl`	Unsupervised multi-latent space reinforcement learning framework for video summarization in ultrasound imaging. CoRR Roshan P. Mathews, Mahesh Raveendranatha Panicker, Abhilash Rakkunedeth Hareendranathan, Yale Tung Chen, Jacob L. Jaremko, Brian Buchanan, Kiran Vishnu Narayan, Kesavadas C, Greeta Mathews
2020	J	`jnl`	A systematic review on the role of artificial intelligence in sonographic diagnosis of thyroid cancer: Past, present and future. CoRR Fatemeh Abdolali, Atefeh Shahroudnejad, Abhilash Rakkunedeth Hareendranathan, Jacob L. Jaremko, Michelle Noga, Kumaradevan Punithakumar
2020	J	`jnl`	Analysis of four methods of measuring three-dimensional pelvic tilt in the lateral decubitus position. Medical Biol. Eng. Comput. Meredith Stadnyk, Tao Liu, Fatemeh Fallahi Arezodar, Lindsey Westover, Jaime A. Carvajal Alba, Edward Masson, Lauren Beaupre, Jacob L. Jaremko, Marwan El-Rich
2020	J	`jnl`	Automated thyroid nodule detection from ultrasound imaging using deep convolutional neural networks. Comput. Biol. Medicine Fatemeh Abdolali, Jeevesh Kapur, Jacob L. Jaremko, Michelle Noga, Abhilash Rakkunedeth Hareendranathan, Kumaradevan Punithakumar
2020	J	`jnl`	Investigation of pelvic symmetry using CAD software. Medical Biol. Eng. Comput. Maha S. Ead, Kajsa K. Duke, Jacob L. Jaremko, Lindsey Westover
2020	J	`jnl`	Virtual reconstruction of unilateral pelvic fractures by using pelvic symmetry. Int. J. Comput. Assist. Radiol. Surg. Maha S. Ead, Lindsey Westover, Samantha Polege, Sarah McClelland, Jacob L. Jaremko, Kajsa K. Duke
2018	—	`conf`	(Semi)automatic construction of access-controlled web data services. CASCON Kalvin Eng, Diego Serrano, Eleni Stroulia, Jacob L. Jaremko
2018	—	`conf`	End-to-end detection-segmentation network with ROI convolution. ISBI Zichen Zhang, Min Tang, Dana Cobzas, Dornoosh Zonoobi, Martin Jägersand, Jacob L. Jaremko
2018	J	`jnl`	End-to-end detection-segmentation network with ROI convolution. CoRR Zichen Zhang, Min Tang, Dana Cobzas, Dornoosh Zonoobi, Martin Jägersand, Jacob L. Jaremko
2018	—	`conf`	Segmentation-by-detection: A cascade network for volumetric medical image segmentation. ISBI Min Tang, Zichen Zhang, Dana Cobzas, Martin Jägersand, Jacob L. Jaremko
2017	J	`jnl`	Dependent nonparametric bayesian group dictionary learning for online reconstruction of dynamic MR images. Pattern Recognit. Dornoosh Zonoobi, Shahrooz Faghih Roohi, Ashraf A. Kassim, Jacob L. Jaremko
2017	J	`jnl`	Multi-dimensional low rank plus sparse decomposition for reconstruction of under-sampled dynamic MRI. Pattern Recognit. Shahrooz Faghih Roohi, Dornoosh Zonoobi, Ashraf A. Kassim, Jacob L. Jaremko
2017	J	`jnl`	Segmentation-by-Detection: A Cascade Network for Volumetric Medical Image Segmentation. CoRR Min Tang, Zichen Zhang, Dana Cobzas, Martin Jägersand, Jacob L. Jaremko
2017	J	`jnl`	Semiautomatic classification of acetabular shape from three-dimensional ultrasound for diagnosis of infant hip dysplasia using geometric features. Int. J. Comput. Assist. Radiol. Surg. Abhilash Rakkunedeth Hareendranathan, Dornoosh Zonoobi, Myles Mabee, Chad Diederichs, Kumaradevan Punithakumar, Michelle Noga, Jacob L. Jaremko
2017	—	`conf`	Toward automatic diagnosis of hip dysplasia from 2D ultrasound. ISBI Abhilash Rakkunedeth Hareendranathan, Dornoosh Zonoobi, Myles Mabee, Dana Cobzas, Kumaradevan Punithakumar, Michelle Noga, Jacob L. Jaremko
2016	J	`jnl`	A technique for semiautomatic segmentation of echogenic structures in 3D ultrasound, applied to infant hip dysplasia. Int. J. Comput. Assist. Radiol. Surg. Abhilash Rakkunedeth Hareendranathan, Myles Mabee, Kumaradevan Punithakumar, Michelle Noga, Jacob L. Jaremko
2016	B	`conf`	Dynamic MRI reconstruction using low rank plus sparse tensor decomposition. ICIP Shahrooz Faghih Roohi, Dornoosh Zonoobi, Ashraf A. Kassim, Jacob L. Jaremko
2016	—	`conf`	Fully Automating Graf's Method for DDH Diagnosis Using Deep Convolutional Neural Networks. LABELS/DLMIA@MICCAI David Golan, Yoni Donner, Chris Mansi, Jacob L. Jaremko, Manoj Ramachandran
2016	—	`conf`	Hip segmentation from MRI volumes in infants for DDH diagnosis and treatment planning. EMBC Abhilash Rakkunedeth Hareendranathan, Dornoosh Zonoobi, Myles Mabee, Chad Diederichs, Kumaradevan Punithakumar, Michelle Noga, Jacob L. Jaremko
2016	J	`jnl`	Toward automated classification of acetabular shape in ultrasound for diagnosis of DDH: Contour alpha angle and the rounding index. Comput. Methods Programs Biomed. Abhilash Rakkunedeth Hareendranathan, Myles Mabee, Kumaradevan Punithakumar, Michelle Noga, Jacob L. Jaremko